Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030999155.1 PREDICTED: Strongylocentrotus purpuratus B-cell lymphoma/leukemia 11A (LOC576422), partial mRNA AATGATAATAATGATAATAAGGATGGTGATGATGACAATGACGACCACAACCATGACAACGATGATGATG ATGATGATGATGATGATGATTGGAGCTGTAAGCAAATGTGCTCAATAATAGTACTAAATGGGTTTTCCCT CTTTTGTTTTCTTATTTTCTTATTTCCAGATCTTCATGCAGCTGAAAAATACATATGTGTGTCTTGCAAG GGCTTGTTCGAGCATGCTGCAACTCTACTGAAACACGCACAGGAAGACCATGGGATGCAGATCTACACAT TTCCAAAGGATGAGAGACCGTTCTCAAGATCCCGGTCGGTGTCTGTTGAGTCCGTCTCCCAGGCGGACTC TCTCTCACCCAAAAGCACCACATCTAGCACCAGCAAGCAGCTTATTCCCAAGCCAATGGAGTGTAGTTTA CCACATATTATTCACCCTCCACTGGCTCCTATACCAGTGCACAGTCCGCATTCTCACCCTGTGGATGGTC ATCCGCCACCGTTTCCAGTCTTAATTCGTCCAACGGGCCCAGATAGGCTGTATTCACCCAGTATGGAGAG GCTCTACCCGCATATGAATCATATTCATCGGAGGGAGTACCATCACATGCATCCTCACGACGGCAGACTT GCAGAGTTACCACCACATATACCTGTCAGCATAGCTGATTTTCACTCTCCACAGCTGCCATTTCCTCCTC CACCGCCACCCCTACCACCACCACACCTGCAACCGCAACATCAACCACCAACAGATTCCAGTGCTGCAAA CCGCTTGAAGCTGTTGGCCAACAAAAGCCCACCGCTATCACCACACAGGCGTCTGCCCTACCCAGGCTAT CCAACCCGCAGGTATCCATCTTTCTCAGCAAAGGGCAAGTCGTGTGAATTCTGCGGGAAGACGTTCAAGT TCCAGAGCAACCTGGTGGTTCATCGCAGATCTCATACTGGTGAGAAACCCTTTAAGTGTCATCTGTGTGA CCATGCTTGCAGCCAAGCCAGCAAGCTAAAGCGACACATGAAGACACATATGAATAAACCACCATCAGCG ATGGGATCTGCTCCAGACATGGATGATAAGGATGAAAACAGCAATGAGGATGAAGGGCAGGATGGCTCAA TCGGCATGGGTGAGGGGAAGAATATGAGTGATAGCTCCTCCCCAGAAGAAGAAGAGATGGAGGAGGAAGA GGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGAAAGAAGAAGAGGAAGAAGAGGAGGAAGAGCCTGATGTG GCAGATATGGTTGATATAAAGCTCAAGCAACCTAGGAAAGAGGAGCAGGAAGAGATCACTGTGAAATCTG AGGGGGAGGCCAAATCTTCAGAACAAGAACGAGAGTTTGAAGAAGAGAAGTCCAAGGATAGGAGGCCAGC TAGTGCTGATGGTGAACGTCACAAGAACATGAGCAGAGGTAGTCCGAAAGATCACTCCCATCATCCTTCT TCATTGTTATGTGAGATGATGGTCAATTCTGGATTAGATGAAATTCAGCAATACAGCGAAGCTTTCAAGC AAGCCATAGCAGAACGGAATGTAATCTTTAATCCTCGATCATCAAGTGATGTGTCTTCACCCGAGAACCA CCATCCACGTAATTCTAACAGCAGGCCTCCATCTAGACCACATGATCACCACAGTCCCATTGAATTGGGT TTGATGGCAATGCGACGAGCAGAGCATACCCTCCTACAAGCCAACCATCATTTACCATCACATGTTATGG TAGAGCGTAGCGCAATGTCCGACTTGGAACTGGTGACCAATCGCATCAAAATGGAGCCAGCACCATCATG GCCACCTTCACCTTTAGCAATACACAGAGAACCACTCATGTCATCACCCGTCCGCTCTGACGCCAGCCCT CTTGGAACACCGAACGGCGGTCCAGCTGCTTTCTTTGCTCAGCGCCGCTTTATGGAATCCAACGGGGCGA TGTCGTCCCACGCCATACTGCCGTACACCAGTCCTCCCAACAGGATGAAGCCGCACAGAGCCTCGGAGAA ACGAAGCGACACCTGCGAGTACTGTGGCAAGCAGTTCAAGAATTGCAGCAACTTAACCGTTCACCGTCGC TCGCACACTGGAGAGAAGCCCTACAAGTGTCAGCTGTGTTCCTATGCTTGCGCCCAGAGTAGCAAGCTTA CACGCCACATGAAGACCCATGGCCATGGTGCCAAAGAAGTCTTCAAGTGTGAGGTCTGCAACATGCCCTT TTCCGTCTACAGCACTCTAGAAAAGCACATGAAGAAAGAGCATTGGGGGGCCATCAAGGGGTTGGCACCT CGCGGCGGTGATGCAGTGGGTTCAAGGATGTACAGCTACAAGGCCAGTCTATCGGGATTGTCCAAGTGAC ATGGGGTCGTCACTCTAAAAGAACAACCTCAAACCTACAAGACTTGCCTGTCTTGAATGAGAACAGCCAC TCAAGGCTGGTTCTTCCTTGCAGCTGATTCCCGTCGTATTCGCTCCATGGAGTGAACATGTCTGTCTAGT TTGAAATGTAAATGTCCCAGAACCTCCGATTTGCAGTAGCGTCTTAGCAACTTGGATAGTGGTGATCAAA TTGTCACTCTAATTCCCACATTACAACTCTATAGCCAGCCATGTACTGTCTTCATTACAAAACAGGCAAG TCGTTTTTTTAGCAAGCTTACATTTGCAACGTATTACTGCTCAATGCTATCTCTGTTAAAACCCTTTGCT ATCAAATATGAAATATTTGCAATTAAGGGCCGTCAACATAGCTACAAAGTGATATTTGTAGGAAAAACCG TAGTACAAGCTAGACATTTTTTACTGGGGAAGCTGAGTCTGAAATAGAAGAGCAGTTGATATCAAAATGC ATATTTCTTCTCCTTGTAAGTTCTCTACTTGGTGCGCTCTTCATGTGCTTTTACATGAAGTGATGGACCT TTCTTCTCTTCATCGAATGAAAAAGAACTAGTAATATCCATTCCAATTCTATCTGGTGTAGGGTTTTATG TATAAAGTAGTGTAGGTAAAGACCTTTTTCTCCTGGTTGTGCACACTCCGAGTGAGCTTTTCGCAATGCA GGACTGAGGATCCCAAATCTTCAAGTGGAACTGTGTGATGTTTACGTTGTTGGCTGCAAATTATAATGAA TTATTGTCTAAAAAATATGTCATTCATTGCCAAACTATGAAATATTAGAAATATGAATTAAAGTGAATAT TTACAGAGTGACATCTCTCTGATAATGTCTCTGAATTATCATGCTGCACTGAGCTATCCAAAGCACTATA TAAATAGATTATTACAGCCTTACAAGATGAAACAAGCAAGAGTGATCATGCTGCTAAAGAAACTATCCAG CTGCAAATAATATATATAGAGATATTTATAATCTGATTCTTAAGAAATATCACAGTGGGAAAGATAGTTT ATTATTCATGTATCAATTCCATAATTAATGGACTAAAATTCTAACCTAAGGGAACATAGACATTGTTTGA CCCGCTCACAATAGTTCAAGATTATTTAACAGTGGGCAAGCGAGGTTGATATAAAATTAATTTTAATTTT GATATATCCATTTACACACTGTTGAAATCATATTAACAGTTTCAATATCATAATGCGACAGTGAAATATG AAGAAGAAAAAACATTTTCCTTGGTAAAACAACAGTTCAGGATTAAACATTATTGCAGACAAGTTTCTAT GAACATGTCCATCAACATTTTATGGTCACACTCCACAATACTAAAAATGGAAATTAATAATGTGTTTTAT GGGCTGTTCATGTAATACTTTCTGGTATTGCTCAATGTAAAATATTTACATTGGTCACTCTCAATCTTAT ACAAAAATAAAATAAAATACAGTTTTCCAGTTTTCAATAGTTCATGTGATTAATCTGATAATAATTACGA TAATAAATGCTTGATATTTTGGTCATATTGTGTTGGATACAACACAGATGGTTTAAGTAGCTACTACTAT TTGATGTTCCCTGTATGAAATACAATCAGGCTAACTGTAAAAAACAATGCTTCTTATTGTATGCTTCAAA TAAGCCTTCAAAGCAAAACTGTGCAGAATAAATATAAATAATAGTACCAATGATATTATCTTTAACATGA CTGAAATAAACTAAATTGTGCCTAAAATTTAATGTGGAGCATCTCATTGTATTTGCCCAAATGAATAAAA TTCAGTGACCAATTCTTCAAGGTAGATGTATCCAAGTGCCAAAGAAGAATATGATACGTTCGAGTTTTGA CAAGGTAAATTGTTCTTTTCTGGAAAGACCTACAGAGTAAAAGATTGTTTGTAATAACGTAATAATAAGA AATATCTGGAATAATTTGAATATTGAATATTGAAGAACAGTGTAGTGAGATATAGGATTGCCACTGGGAA AATAGAACATAGAAATTTAAAGGCCGACTATTCATTGTTGGATGGGTATTTTACTGGTTAGGTTTGCATG CTCTTCAAGAGTACAAGTATGAAAATGAGTGTTATTACAGATTAATTGTTCATTGAGATTTGACAGCTGC CTACGATGCTACAATGGAATACATGAAGTAGCTGGTCTTGCTACCAGACAGGATTCAGTTGTGGAATATT TTTTGAGCCGGATTTCTTTTTTCCATCATTGGGGATGAGGGCTCGAGATATGTCGACAATTGGTTGTAAA GTCACGCTCTACAAGCTGGATACTGCACAAAAGGGAGGAAAACTGTGTAGTCCAGCAAGGAAAACTTAGG ATTTGTGAACTTTTCTGATAATTATGGAGAGACCGTGAAGAAAAAGCACTGCCACCATACAGATCCAGAA CTATGAAATGAAACTGTAAAATGAACTATGCTAAGTTAAGTATTACTCTCTGGTGGTCCGTAGAGGTAAC AAACGGATGTATAGTGTGTGAAAACAGCCGTTATAAAAAAAAAGGTGTTTGTTTGTTTGCGGCTTGCTTA GGAAATGTTGCTATTCAAGATGAAGAGGATGTAGTGCAGAATTCTGAAATCATTTACATTAAGAAAAAAT GTGTTTGAAAAACACATGTTTTTTAATTTTATTTTCTCATCAGTTATTATTGTATTTCCCTTTTTTTTTC TTTGATACTATTGTGTGTTTGTAAAAGATGAGAACTTGTGTCAATCCTTCTCTGAAATGTATGTTGTTTT CTAATGGTATGAAGTAAAAAGAGCTTTGTACATGTGGGATTTTTGCAGAGCAAAAAGTTAGGGTGAACGG TTGGTACTCTACTTATGCTGCTTGAAATCCTAAATTTGAAAGACCATCACGTCTGAGAGATTTAAAACTT GTGCAATATTTCTATTTCATTACTTTTTTATTATCATTTTAGTGCTGACATAAGTCAATTGTTTTAATGT GATTTGCTTCGTAGGGGGTGGTCAGCATTTTATTGTGAGGTTTTAATTACTTTTAGTACATGTAATTATG ATGCTGTGTGAAATTAGTTTTAGCTGATATGAATCAGGTAGAACCATACAAACCCTGATACAGCATAGTT TCCCTTGTTATCAGTAGGATATATAGGTAATACACTAGAGTAAGCTTTACACCAATTCAATGAACAAACT TTACAATGACATTGTTGAAGAAGATGAAATGCTAAATGAGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds