Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT094511.1 TSA: Strongylocentrotus purpuratus WHL22.402200.1 mRNA sequence CAGGTGATGAAAGAGTTTAGCTGTTACAACATAATATTTTCAAGCTCAGCAACAGTGTATGGCCCACCTG ACTTTCTACCTATAGACGAGACACATCATGTTGGGCGTGGTATCACAAACCCATATGGCAAGACCAAATA TTTCATCGAAGAGATACTGAGAGACCTAACAACGGCTGACAAAAACTGGAATGTTGTCCTTTTACGTTAC TTCAATCCTGTTGGTTCACATAAGTCTGGGCTCATTGGAGAGAATCCTCAGGGAATACCACAGAATCTGA TGCCTTTTGTCTCTCAGGTAGCTGTAGGGAGGAGAGAGAGTGTGAAAGTCTTTGGGACAGACTACGATAC ACCTGATGGCACAGGAGTACGAGATTACATCCATGTATTAGATCTGGCGTCTGGTCATGTAGCAGCTGTG AACAAAGCTTCTGAGGGATGCGGTCTGAAGCTTTATAATCTTGGCTCAGGGAAAGGATACTCTGTGCTGG ATATGATCAAAGCTATGGAGAAAGCAAGTGGAAAACAGATAGCGTATAATTTGGCAGGAAGAAGAGAGGG AGACATAGCATCCATGTATGCTAACGCAACACTAGCAGAGACTGAGTTACACTGGAAGGCTGAGAGAGGG TTGGATGAGATGTGTGAAGATCTATGGAGGTGGCAGTCTAGCAATCCAAATGGATATTGAGTCAACTTTG TTGACATTGGCAGTGATTATAAAGGCTTCCATGTAGCAGTGACTTACAAGTTACACTACATTATTCTGTG TCAAGGTTATTTAAGCATCATTAAGTATTCGCAATTTATTAACATCAAGCATCCATTAGAAAATTATCAT CATTTAATAGGAAACTACACATAACAGAGCAGTAGATAGGAGTCAAAATATTTATTTGGTTTTCTGAATA AGAACAAAATATACATGTACATGTACTGTATGCTCTGTAGTGTGTAATCAGCCAAATAAGGGTGAAGAAG GATGACTATATAAAGTCAGCTTTTGGACTCAAATGAATTTATAGTCATAAATACATAGAAGATCAAATAT CAAAGATATAAAATGTATAAATATCAGTTATATGACATGAAGTTTGTGAGATATGTGGGGACTTGTTTCA ATGTAACCAATTTGGGCAATGTAATATTGAGAGAAAAGGGGTACTGTACGTCACCTTCCAGTCTTCCTCT TTATATGTGTTTGATAGAGCATGAGTAATTCTTACTGCTACCTCTTAATCTGAAAACATTGTTGAACCAA TCCAATTGATAGCCCCTTTTTAATAGTTACAAAGCACTTCATTATAAATATGAGCCCCTTTTATAAACTG TGATAATCCACCTATAAAAAAGACTACTCTGCTATTTTTTATTAAATGCATTTAGTAATCCATGTTCTGC AGTAAAATTAATAAGCTTTCAAATGTTTATTGAACTGAACCATTGATGTAGCAGTCTATAGTTTGGTTAT TGTCAAGAGGTTTCTAATTTGGACACCAGCTACAAAAGTTCAGGTATTAGTTTTAAAAAAATTAAAAAAT TAAAAATAAAAATTGAAAAATAAAAACGATCAGATGATGAAAGAAAAAAAACCTATGATACTATAAAAAC AGAAACTTTTGCAATATAGTTCAAGTCTACCAATCACCTGCAAAGATGATTTTGTATAGCAAATCAACCT AAAAAACAACTTTACCTGGCATTCTATGGGTTAAGGAGTAAGACTGAAGTAAAGAATAACAACCCTGCGA AAAGGGCATGCACAGAACCTAAGTCCGACCGAGAGAAGGTTAAGTTCTGGGGAGAGGTGAAAAATAATTT GTGAGCCTTATCATTGCTGTTATGCAAGTGTGGAAGAACATCAGAGAAAAATTGTTTCCTGAAAAACATG GCTCTTCAAATGCCTCCACAATCTAAAAATGACAAGTAACAGCTTAAAAATGGGGCCCGATTTTTATGCT ACATGTTTGTCCAGTCCCTTATACATCTTTCTGTGAACAGTGCTTGTTACTTTACCAAGACTTGGCCAAA TTTCTTATCATTTTGATGACTCCAGAACATTGCAGTACACACCAATGCTTATATTCTACATGATCAACTT TTTCTGATTAATTCCACATCGTTTCTTTCACAATGCAATCACGTGACCAGAACCCAACTTTCTCTTTAAG GACAGCCATTATCACAGCAATAATTTGTTTGTCAATCTCCAAATTGAGTGTTGTGTCAATTATGAATCAG TTATATTACAGCTTAAAAATTGCACTTATCTGAACTGTTAGGAAAGTTCATGCATACAAAAGTTTCTAGT GTTTCAGTAGCTGCTTAGTGAGGAGTTGGTTTGTATTCATGTCATTGTGTTTCTGAAAGAAACTATATCA TTCTAACGTCTCGCTAGTATCATTGACTTATGAAGCCTCAGGGAATGAGATCATGTAATAATTACTAGTC ATCATGTTCATACCAAATATACCCATATATGTCATTCATCGTACATCCAAGTAAAGCAGAGATTTAAGGT ATAGACTGAATTGCCTCCTTTTCAGCAGTGAATTATTTGTATATCTGGCTCAGCATATTGAATGAGTTTA TTGTCAGGGTTTCTAAGTTCAGGGATGAGATTCCTACGGCGAATGATTTACGGCAAATTTGACATTTTAA GACGGAGGGGGACCTTACTACCTTAGCAGCTGCAGCTTTGGGAGAACAAATATTTCTCAAATTTAGCGTT TAAATGCAGAGAAAATGTGTCCTTTTACGCACCCGTAAATATGTTCTTTTCTGTTAAAAGGGGGGGGGGG CTTCTATTCCCACCAGGGACGTTGTCCCTGGACCCCCTTTTAATCCTCCTCCTTTGGGGGAATTTCTCTG TCTCATCCCTGTAAGTTATAACATATACATATGTTCTCCCCATTGGTCTTATGCTAATAAACCTGTATAT ATATATATATATATATAAATATATATAACAGATTTAAAAATATTTAAAAATATTAAAAAAGAGGATTGCA ATGCACTATTACATGTACCTTGGCAAAGGTACAAGTTTCCACTCTAAATTTTGGGGCACTAAACATTTCA TCAATTGACAATGATGCATTACCTTACAACCACATTTTAATCATCTCTTATATTTGCTGCAAGTACGTGG ATATTATATATTATTTTTCTGTTTGTTTTACCTGACTGCTAAGAAAGCATGTGTATTCTTGTAGTTAAGC AACCAGGGGTCTGACAGCTTTAAGTCCTCTCCGAAGGACTTGGTAATAAGAATTATGCTTTACCATAAGG ACAGAAGGGCATTGACTTGGTTTTAAACCCAGGACTTCCGGTTACAAGAAAACTGCTCTAGCACTGAGCA ACTGAAGATGAGCTAAATTTCATCTAACTGTCATTGATATGGCAGAATTCAGAAATATTTACAGAAAATA AATAAAACACACCTTGTCTCAAAATTATTTCCAGTCTGTAATTGACAAGATTTTGCTCAAATTCTTTCTT TCATTGTGAATAGCTCATGTTAATAAATTATGCTTCTTTAGGTTGTAAGTGATAGTGCTCATGGTTCTTA GTATTGAACAAACTCTTATACGATATTTAATGTTTTTAGATCATTATGTGACCTTTGTGTATAACAAAGC AATAGATGATTTGAACAAACTCTTATTACGATATTTCATGTTTTCAGATCATTATGTGACTTTTGTGTAT TAAAAAGCAATATATATTATGGGATTTAGATTGATTTTGGAAGTAATTATATTGATGGTGAAGTTTTGCT AATCACCTCAGAACCTTGAATTAGATGTGATTAAATTAGTTGTTTAGTTACCACTTATCTGTTTATTTGC TTTTTTTATGATGAGCATAGTGTATCAAGATATTTGATTATACAATCAACGTTTAATTGATTATGGAGGC TGAAATGTTTTTAATATAAATATATGGAATTGATTATATTTAGACATTTGTATGCAAAATATGAAGAGGA AATTATAATTGTAATAAAAAATAATGATAAAGCAATCTGTAAACACGTCTACAGTGTACTATTTATCTGT GTGTAAATTTTACAGTACTTCACAATACTACTCATTAAAGCCTCTGAATTACAGCTTAGAATCACCCCCA CAGTCAATGAAAAGCCCAAATCTGTCGAACATGAATAATTGCCAAATTTAACTCTAAATCAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds