Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030978069.1 PREDICTED: Strongylocentrotus purpuratus roundabout homolog 1 (LOC581462), transcript variant X2, mRNA ACGTATTGATCGGTGATGTTTTTTTTATGGTTGTTGTGGTTATTATGTGTAATCTGAACTGAATTCATCC TTGATGCACTCTGAGATAATGGACGGTGGTTTCGCAAGCTCTTGCACTTTTTGTCACCCTATTTAATAGA AGAAAACTACAGATCAGACAGAGGTTGAGTGAAGTGTCTCTTTCTTAGGGTGATTCTACAGAACAAAGAG AGCTGTGATAACTCCTCATTGGTCACACCTAAAAGAGCGGAAGGAGGGCTATAATCAAACTGATGGTTAC TGATTCGAGGAAGGATGCGACTCAATCCCATTATGACCACGTGAATATTTGGTGTCGGTCAGAATAGTCT ACATGTACACCCCTACCGCCGTCATCGTGACAGGAAAAAGCCCATTGGGAGTGAGGCATTAGAGCAATTA TCAGCGGGGAAGTTTGGCCGTGTTTGTCAAACGCTGGATTGTCTAATACAGCAGAAAGCCCATTGATGGC TTAATAGGCTGTCAAAACAGTGGTGAATCTTTTGTGGGACTACTCATTTAGTCAGCTGGAAATCAAAAGG ATACATCACAAGAAAAAGCAGCCTCTGTTCAGATCCGTTGAGTAAACTATAGAGAAAGCTACGGGACGAG GAAAATGAATTGTTTGGCTAATCTGTGAGGAGAATAGGTGGAAGGAATCACTGGATTGTGAATGATGCTA TCGTAAAATACCACTGCCAAATTGTTTCCAGTCCCAGATCTGCAGCGACACTGCATATTGGCTTCGAATC GAGAGGGGATCAAAAACAGAGGAACAATTAGTTGAGAAATTAGGAGTCCCTATGGAAATATATGCAAGTT GAACAGTGTTTCGGAGAGAGACGCCAAATTGACGCCCAAAATAGGAGATTTAGATTTAGTCCCCCAAAAC TCAAGAAATTGACAATATTCCAATGTGATAACAGATGGATATAGAAGCAGAAAAGTTTCAAGGAGAGCAT TCATAATAAACAGGGACTAATATAGAATTTTAAAGCAGATATTTTGAAAACGGTGATTAGCGTCGTCTTG CAACAGGAGGTAATTACAATGGTTACCATGGCAGCCGCTGCTCATTACAAGCTCTTCCTTGTCTCAGTCT TTTCCCTGATTTGGACGCCATGGCCTCATTTAGTTGCAGATGCCCAGTTTACCACGGCATTTACGCCTGA CAATTTATCCGCGAAGGAAGGAGAAACAGTAACATTAGTGTGCACATATCAGCCAGAGACCGAAAAGATA GACTTTGCCTCCCTCTCTTGGCAAATGGGAGATACTGTGTTAGCGTCCGTCAGTTGCCCCAACGCTTGTA GCAGAACAAACACAAATACGGACCGGTATTCGCTGGACGTTGACTTTCAATCAAGTGGTAATTTGACCAT CACCGGTGTTTCATTGACCGATGATAATGTTTATCAGTGTAAAGTCTCCACTATCTATAGAGCTGCTGAG AGCACTTCCCAACTCGTAGTAAATGTTCCACCTGTAAGCCTGAAACTCTCGGACACTATGACACCGGGAG GCCACGAGCAGGGCGACATCGTCCCCATCCTATCAGGCGAGTCTTACACCGTCACCTGTGCAACCCAACC TGGCGCCAACCCACCTGCGGACCTGGAGTGGACTTCGACCACCGCCCAGATCAACCAGGAGGACAAAGAT GACCAGCAAGTGACCGGTAGTAAGCTGACCGTGTCCAGCAAGGAGGTGACTTTCACGCCGTCTATGGCTG ACCATCTTACGACGGTCACTTGCGAAGCCACACATCCAGCTCTGGAATCATCCCTTACCAAGTTTATTCA GCTTGATGTACAAGTTCCTCCAAGGAATGTGAACATCGCTTTACAATCTGCCATCGTCTCTGACGGTGGG ACTCTGACGCTACAGGAAGGAACCCCAAGCACCATCACCTGCGAAAGCCTCGGAACAAGACCAGCCTCTG CAATCACATGGTACCTCGATGGCGTCCAAGTATCGTCTGGGGTCGGCAGACCGGTATTTTCCCCCAATAT GAATGACGGTCGTTTACAGGATGCGTCCAGCAGCATCATCATCCAACCTACCAGGGCGCAGCACGAGCAG GTTCTACGTTGCCAGGCAACCACGTTTGGCATCAGCCATGATACCAGTGTCCGACTGTCTGTTGATGGTC CACCTGACCCGCCCGTAATCGCTGGTATTCCTGACAACATCAACGAAAACCAGCAGACCACCGTCTCCTG TCAGGCTGACAATGGCCACCCTTCCCCCTCGTTCCAATGGTTCATCGGCAGCCGGAACCTGAGCGCCTCT GCTTCGCTGCAGGTGTCTGCCGACGCCAAGAACCGTATCGACGCCACGAGCCAGCTGCGGTACCTGCCCA TGAGAGAGGATAACGGTCTAGCGCTGGAGTGCAATGTCATCCACGATCAGCTCTCGCAACCCATGAGAGT GATGAGCGATACCCTGGTAGTCAATTATTGCCCAACAACAGTGGATGTGACGATCTGCCCTGAGGTCGAA GCGGGGTCATCTGAGGTCATGGTGTGCCGATCGGGGGCCAGCAATCCAGCGTCAAATCTTGTATGGATTA AAGGTGTCACTAGCGTCACGGAGCCAAATGCCTTACAGACTCACTTCGAAGAGAGCACCGAACCCCTTGG AAGACGGGCGACGCTGAGTTACATGAGAAACTTCACCAAAGAAGACTATAAACAGAGCTTTAAATGCTGC ACTACTCTCAGCCCATCCTGTGACTCTACCGTGTGCTCTGAACCTTGCGTCCCAGATGTCAAATATGCAC CAGAAATGCCCACCATCTCTAGGAACATGCCCGGCCGCCAAGTCACAGAGGGCACTGTCGACCTGGAATT CACCTGCCGAGCTGACGGCAACCCCAGACCCGCCCTGACCTGGGTGAAGGCCAAAAACGAAGGGTTAATG CTTGATCAGCTGACCAAGGAGGATGGCTCCCAGCTGCTGCAATTTAGGGAGGTCCGAAGGCATCATGGAG GGGTATACAAGTGCATTGCTAACAATAACATTTCGCCAAGGAGCAGCACAGATGACCAACTCATCGTGTA TTTTCCGCCTACGATTCAAAATAAGGCCAACAACCGGACGACGGCCAACGAGGGCAAGAACGCCTCTCTC TCCTGCATCGTTGAGGGCAACCCCAGCCCAGACGTCAACTGGACACGGCTCGGCAACCACTCGCTTTCGA ACAGGACTGTGATTGTAAATACAGAGGTCAACAGTGATTATGAGAGCGTGGTGACGAGTACGCTGAACAT CTTGAACGTACAGCCGGACATTGATCATGGGAACTACAAGTGCACGGCGATAAGCACTGCAGGAAGAGAC GATGCTGTCATTATCCTTAGCGGAACATCAAAACCAGAGCCTCCTACATCATTACGGATTGATGCGAGCC AGATCAAAGCCCATTCATTCATGATTTATTGGCAATTTGGCTATAATGGTGGAGTGGAACAATCATACGT CATAACCTACTGTCTGAATGACACCCAACTGGACTGCAAGAAAATATTTGGTATCAAGGAGCCTGAATAT TTATTAGAAGACCTTGAGGCTTTTGGCTGGTACTCTATCTCAGTCTATGCAGAGAACAGTAACGGTAGAA GCTCCGAGACCAGCGAAATCCTTGTATCTACTTCGCCTTTACCTCCTAGTGACTATGGTATCATTGTGAC CAACGAAAATGGACTCATCACTTTGATCTCCAACCCTGCGACCGACTTCCCTGGCGAAATCCGCTTCAAG ATCGAGACCGAGGCAGAGGGGTACTGCAATCCACGGAGTAGTGCCTACCCTGCCGATGGAGCCCCCGTAC AAAAGCCTAGTGATCAGACTGTCATGGTGTCGAGCTTTGGAAGAGGAATGTGCAGCGTGCGGGAGACAGT TGATATGGCAAGTTTAAATCAGGGTGGCAGAGGAGCACCATCGACTGTAACATTTGCAATCATTGGAGCG ATTGTATTTATAGCCTTACTACTAGTCGTCATTGTATTTGTTAGGAGAAATCATGACAGAAAAAATAAAT CAACAAAGCTTCAACAATCATCAGTAAGATCGGGGCCTGAGGGTCAGCCTACAAACGGCCAGGCTAGGTC GTTCCTTAGTGGTGGGTATTATGCATATAATCCAGTATATGATGATGTAGCGAAGGAGGACTTTAGAAAA TCACAACATGAAGGAAGAATGGTAAACGATGATGGTTTAATCTACGCTGAGGTTGCACACGTCAACAGGC ATCCCGAAGGCCAACCACCAATCAGAACGGAGGAACCCACCATATACGCATCCCTCGACTTTGACAGGAT GAACGATAACAAGATCCAAATCGATAAGCAGGCCATTGTTGACTCAAACAGGACAGCGGAGGAGTGCCCG GAGAAAGAAGCGCTCATTTACGAGAACGTCACACCACAAGGAATGCCAGTTTCACAGTGACGTTTGCGGA ATGACAATGACCATTGAATTAATCTATTGGCTACAGGGAACAGATAATCACCATGTCAAGCAGAACAATA ACAAAATTGCTGACTCTATCGGGACAGCCGAGGCCTGCCTGGACAAAGAAACGCTCATTTACGAGAACGT CACACCACAAGGAATGGACGTTTGCGGAATGACAATGTCCATTGTATAAATCTATTGGCTACAGGAACGG ATTAGACGACTTCTGGATAGCTTATAAAGATAAAGGGTGCAAGGTTCCCTGTCGTGCTTCAAGTAACTAG AGATGGCAACTATTTAAACTAGTATGTGATACTAACAAGATTGCTACATGTGTCTTTGATAGTCTCACTG TGGCTCTGGCAAAGCAGATGATGTCACCATCAAACTTTTCTATGATACGAAAGAGAATGCTTCCTTTTAG ATATCGTTGTTCATTCCATCTTGACGTTTACAAAACAGATGACGATCACCATCCACGCTATCTGGTGATA GCTTCAGTATGGAGATCTATTTGTTGTTATCGCCATGACTTATGCAAAAGAGACAACAAAACATAATATT TACCATCAAAATGTTCATTGATGTCGATAAGCTTCTTCCCTGCAAAAACATTTATTCTTCCATGCGTAGT TAAAACGATACTGAACTGATGAACTTTCTGCCCTAGCGTACTGTGTATTTCACAGCGCCGTCACATGATC AACTTGCCAACAGTGCGTAACCCAATACCTAATTTGCACTTCAGAGAAGCTACGGAAGCAGTAAGTTACG AGACCATACTGCTACAGCTGACCTGAGATGGCCTTAGAGGGGATTTTGTGGTAGTGCTTCTAGGACAATA GGGCTTTAAGGGCAAGACAGTGATAAATATGGATGATATAGACAAAGATATCAATGGAATATGCCTGTGG GAGCAGGGCCCTGTTTCACAAACTTGTCATGAATAACTAATACTGGAATTCTATGACAACTTGCTCTCAA CCAATCAAAATGAAACAATCACATCAGCTGACAGCACTTATTGCAATTTGTTTAATAACAATTTTTGTGA AACAGGGCCCTCAGGTGACCATGAAATGAGTTTAATCTGGTGAGGAAAATATGTTCGGGTATTACAAAGC CATGAAGTTTTATGTTTGTATCTGTTAATGTTTGTATGTAAGTAACTATGTTTGTTATGGTTGTATATTT GCCTTGTATTGTGGAAACTAGAAGGAGTCAAGATTGGATGTGTGTGAGAGAGATGGAAGATCGTAGGCGG AAAAAAAGATGGTCGAATATGAGCTAACAAGATTATATGCATAGTTATAAATAGCTAATATATTATGACA GCATTACGCAATTTCCTTTTCTTTTGTCCTTTTTTTAAAAATGAAACGTGCAGACTGTGTTTCTTATTTA CAATGCCATTGTTATTGAAAAGTCAATGATTTCCTCATTATTTCCAAATTAAAGTGTAGGATAGAATATA TTTTATAACAAGCCAGTGTATTTATGCCATAGTGCAAACGACATTAAAATATAAGCAAAGATAGAGTCCG TTTTAGATGATTTCCAATATGCATACATGTTATCAGGGAGATGATGTCAATTCCCTGATGTTATCTTGGA AACTGTAGTGTCAGTTATCGTAGTTTGCAAGTTTGTAGTTTGTGTAGAAGCTATTTCGCAGTTCAAGTAG GATCTACCAAAAATGTATTGATTTTTCGTAAGCAGATTATTCTGATAATTTTTATATTTTTGTAGCTCGA AGATTTGCTGCTTGCTTAACAAATTTGTCTTCCAATTTGTGATCAAATTGTTCATTGCCTTGCTTTAAAA AAAAAAAAGTACGACCTTGAAGATTGGGATTTTGTGAAAATGTAACTATTAGGGATTCCTGCTTCACAAA AAACTCTTTCACATAGACTTGTAACCATTAAGTTAAAGTGGTAATTAATAGGTCCCCCAAATCTTTATAT TAGCTGGCTTCTAGAGTAATCTCATTGTTGCCATAACTTGCCTTTTGTAAACAAAAATTATGTCAATGTA CTTACATTAAAGAGTAGCTTACAGTCAACAGTAATGGTGTGAAAATTGTTCAGACCTAAAAAAAAAGGTT CTTGTTGCTATTGTAGTGTAAACAATTAATGGTTTGGGTTAAAAACCTCCAAAGAAGTATTGTCTGTAGA TGTGGGGAATTATTTCATACAGTCTGTTTTCCTGTAGATGATGTGAAATATGCTGATTAAAACCTTAACA AAACTGGATGTTTGAAATACCTACCGTGTATGTGCTGAAAAACTAAATTTGCCAAAATGGTTGGTCCTTT TTGGACTATGAAATATATTTGCATAGGTTTTGATATGTCACTCGTAAATGTAGATGTATATGAAGATCAT CAGTTGAGAGCCAGGAGGGTGTTGCTTTTGTGTTAAAGGCTGATAGTAGTGGGTTTTTATGGGAAATTTG ACACCACTTGGGTGTTTACTCAACAATGGGCTTCGTCAATCATCGAGAGTGGACTTTACAACCGACGAGT CTAATGTAATGCTTTGTGCCCTAGTCTACCGCTGGATGAAATTCCCATCATGACATCATATTTCCCTCAC CCTCCAGATCTGAAGGCGAGTTGATGAATTTTCTGGTGGGACCACGGGTTCGCTGCTTCATTTGCCCACA CACACATTAATCAATAATTCAACCAAATCTGATGTCAGCGAATTATGATGCAATACACATAGACACCTAC TACTATATGTTAAGCCCTTCTGGCTCCCAGCAGAAAATATCAGTATGCTGAAACACTAAATGCTTTGTAG GGTTGTCTTTTGGAAGAAGAATGTGGAAATTATTGTCTGAAGTATTGTTTGAAGCTTTAGATGAACTCAA TTAACATCTGCTCTATTCACAACTCAACATGCTAAAAAACGCATATTTTTTTTTTGAAAAGCACAGTGAA AATGAATGTTGTTATTTTCAGGCAGAGGTTAGATATGGAAATCTTTGTCTGAAATTTGAGATGAACTAAT TGAATAACGACTGCTATATGCACAACTCACATGCTGAAAAATGCATCATTTATTTTTAGCAACACAATAA TTTTTTTTTTCAGTGAGAGGCTAAGAATGAACCCAGTGCATTATTGTATATAGGTGTAGTTTTACCCCAA GCCCCTTTTATAAACCAAAGAGGTCAAAATTGTGAAATTACACAAATGTGTCTTTTTGTACATTAAATAC ATATGTGTGCACAATTTTTCGTAGTACAATTATCATTCTAAACATTCTTGCCAAATAACAGCATGTCGTG AAGTGGGCTTAGAATAAAGTCAGATATTTATTTATACCATTTTTGACAATATTGTGAACATAACTCTATT CCATTACAATACATATGGTAGTATCACAACCATGTAGAATGTGTTCTTGTTCAAACCTTTGCAAATGAAA ATACCAATGATAGTGATAATAATATGCTGGGGTTCTATAGCGTTCGATACAATGACAATGTCTGTGGGCG CTTGACAGATATAGATGTATTACTAACCCCCATTATGGGATTCAGGCTTGCACACACACAATTTACTATG CACATTCTCCATTCCCTGGGGAGCATTCCAGCCAGGCATTTCTGACCTGTTGACCCTACAACAGTACCTC TTGCCATTCATATATACACACGTTAAAATGTGCTGCGTCTGTGTTTGAGGCATTCATCATACGGAACCTG TCTGAACCTGGCCATACAGGTTCATAATGTACATGTAGTTTATTTACACCTTTTTTGAAGTAATTGATGG TATTTGAATCATGCTTTGTGGCATACAATAATGTCAATGCTATATAATTGAAAAAAGAAGTAGAAAAAAA TGTTTCCGGTGTCATTTTCTTGGAACACAATACTTTTAAGCATGTATACAACGCCTACATGTATATGGTT TATGCCTAAAAATGTAATATATTGTGATCTAGATGTGGGTATTAAAGTATGTATGCACTGGATATCAAAG GTTCTTATTAGACCATTGATAGGTAATCGTATGTGTTAATCATGAAATGAATCCAATTCGTCTTATGAGA GCTACATGTACTTTGAAGCATAATGTTTTTCGAGATCTATGTGCTAGGACCTGAGTTTGAGCGTTCCAAT GAATTCTTTTTGCTGGCAAAAGGACACAAGTTACTGCCTGTAGGAAATAGAAAATTCACACCAGTATAGC ATTTACACATGCAGAAGGGCATGATGGGGTCACATCAAATGTAAGACCAACAACCTTGTGCTTCTGAACA TTCTCAGCATTTTGAAAAGAGAGACCAAATACTTGTATGCATTCATTTGTTTCAAAACTGACATTCCAAA TGATTGAAGGAACTATTTGATCCGAGATAATTGGCATGTATGCGGTTGACTTGTGCATATGTTTTTATTT AAGGTTATGGAAATTAAGGTTTGAAAAAAAAAGAAAGCAAATGGCATTATTTAAATGTTTCCAACTCGAC TAAATAACTCATGCCTACATTATAATGGGTATTTCCTGTCTGAATACAATGAGAGAAGGAGAGGATTATC GTCTGTTAAAATTGTCTTTGTACTCTGAAATGTTTGCACATGCGGCACATATCAAGCTTATATAGTTATG CACATTTCTCTGTAAAGATTTTGCGTTCTTCTTCCTTTATGCAAGGTATACATAGTCCATCTTTGTAGCA GATGATTTTCTATTTTATTGTAGGTATTAAAGATAACATTGCAATCATTCCACATAAACGATGTGTATTT AAATATTTGAAAATAAAACTACAAAGAGAACTTTGTATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
