Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030978071.1 PREDICTED: Strongylocentrotus purpuratus roundabout homolog 1 (LOC581462), transcript variant X4, mRNA CTGCATCCTGTCATTCCTGTATTAAACGCACTGTTGTTGCGGCCTTCTCCGGAGATAATAAACCAATTCC TTTTGTTATCTTTGCCATCCCTACTGGATTATCAATCATGATTTCTGTAAGTTCTATGTTGCATTGACGG TCAAAAGTAATCGGATATGTTTATTTTGAAAGTGATGACATCATGTCATTGTGCAAGAGTACATGTATAG GGACTAAGTACCTGATAAGGACACTTCACAGTCTAACGAGCTTGATCAATGCTCATTTGTGATTTTTCAT ACCAAAGGATTCCTGAGAGAACAGGATAGAACCGCGATCAGACAGAGGTTGAGTGAAGTGTCTCTTTCTT AGGGTGATTCTACAGAACAAAGAGAGCTGTGATAACTCCTCATTGGTCACACCTAAAAGAGCGGAAGGAG GGCTATAATCAAACTGATGGTTACTGATTCGAGGAAGGATGCGACTCAATCCCATTATGACCACGTGAAT ATTTGGTGTCGGTCAGAATAGTCTACATGTACACCCCTACCGCCGTCATCGTGACAGGAAAAAGCCCATT GGGAGTGAGGCATTAGAGCAATTATCAGCGGGGAAGTTTGGCCGTGTTTGTCAAACGCTGGATTGTCTAA TACAGCAGAAAGCCCATTGATGGCTTAATAGGCTGTCAAAACAGTGGTGAATCTTTTGTGGGACTACTCA TTTAGTCAGCTGGAAATCAAAAGGATACATCACAAGAAAAAGCAGCCTCTGTTCAGATCCGTTGAGTAAA CTATAGAGAAAGCTACGGGACGAGGAAAATGAATTGTTTGGCTAATCTGTGAGGAGAATAGGTGGAAGGA ATCACTGGATTGTGAATGATGCTATCGTAAAATACCACTGCCAAATTGTTTCCAGTCCCAGATCTGCAGC GACACTGCATATTGGCTTCGAATCGAGAGGGGATCAAAAACAGAGGAACAATTAGTTGAGAAATTAGGAG TCCCTATGGAAATATATGCAAGTTGAACAGTGTTTCGGAGAGAGACGCCAAATTGACGCCCAAAATAGGA GATTTAGATTTAGTCCCCCAAAACTCAAGAAATTGACAATATTCCAATGTGATAACAGATGGATATAGAA GCAGAAAAGTTTCAAGGAGAGCATTCATAATAAACAGGGACTAATATAGAATTTTAAAGCAGATATTTTG AAAACGGTGATTAGCGTCGTCTTGCAACAGGAGGTAATTACAATGGTTACCATGGCAGCCGCTGCTCATT ACAAGCTCTTCCTTGTCTCAGTCTTTTCCCTGATTTGGACGCCATGGCCTCATTTAGTTGCAGATGCCCA GTTTACCACGGCATTTACGCCTGACAATTTATCCGCGAAGGAAGGAGAAACAGTAACATTAGTGTGCACA TATCAGCCAGAGACCGAAAAGATAGACTTTGCCTCCCTCTCTTGGCAAATGGGAGATACTGTGTTAGCGT CCGTCAGTTGCCCCAACGCTTGTAGCAGAACAAACACAAATACGGACCGGTATTCGCTGGACGTTGACTT TCAATCAAGTGGTAATTTGACCATCACCGGTGTTTCATTGACCGATGATAATGTTTATCAGTGTAAAGTC TCCACTATCTATAGAGCTGCTGAGAGCACTTCCCAACTCGTAGTAAATGTTCCACCTGTAAGCCTGAAAC TCTCGGACACTATGACACCGGGAGGCCACGAGCAGGGCGACATCGTCCCCATCCTATCAGGCGAGTCTTA CACCGTCACCTGTGCAACCCAACCTGGCGCCAACCCACCTGCGGACCTGGAGTGGACTTCGACCACCGCC CAGATCAACCAGGAGGACAAAGATGACCAGCAAGTGACCGGTAGTAAGCTGACCGTGTCCAGCAAGGAGG TGACTTTCACGCCGTCTATGGCTGACCATCTTACGACGGTCACTTGCGAAGCCACACATCCAGCTCTGGA ATCATCCCTTACCAAGTTTATTCAGCTTGATGTACAAGTTCCTCCAAGGAATGTGAACATCGCTTTACAA TCTGCCATCGTCTCTGACGGTGGGACTCTGACGCTACAGGAAGGAACCCCAAGCACCATCACCTGCGAAA GCCTCGGAACAAGACCAGCCTCTGCAATCACATGGTACCTCGATGGCGTCCAAGTATCGTCTGGGGTCGG CAGACCGGTATTTTCCCCCAATATGAATGACGGTCGTTTACAGGATGCGTCCAGCAGCATCATCATCCAA CCTACCAGGGCGCAGCACGAGCAGGTTCTACGTTGCCAGGCAACCACGTTTGGCATCAGCCATGATACCA GTGTCCGACTGTCTGTTGATGGTCCACCTGACCCGCCCGTAATCGCTGGTATTCCTGACAACATCAACGA AAACCAGCAGACCACCGTCTCCTGTCAGGCTGACAATGGCCACCCTTCCCCCTCGTTCCAATGGTTCATC GGCAGCCGGAACCTGAGCGCCTCTGCTTCGCTGCAGGTGTCTGCCGACGCCAAGAACCGTATCGACGCCA CGAGCCAGCTGCGGTACCTGCCCATGAGAGAGGATAACGGTCTAGCGCTGGAGTGCAATGTCATCCACGA TCAGCTCTCGCAACCCATGAGAGTGATGAGCGATACCCTGGTAGTCAATTATTGCCCAACAACAGTGGAT GTGACGATCTGCCCTGAGGTCGAAGCGGGGTCATCTGAGGTCATGGTGTGCCGATCGGGGGCCAGCAATC CAGCGTCAAATCTTGTATGGATTAAAGGTGTCACTAGCGTCACGGAGCCAAATGCCTTACAGACTCACTT CGAAGAGAGCACCGAACCCCTTGGAAGACGGGCGACGCTGAGTTACATGAGAAACTTCACCAAAGAAGAC TATAAACAGAGCTTTAAATGCTGCACTACTCTCAGCCCATCCTGTGACTCTACCGTGTGCTCTGAACCTT GCGTCCCAGATGTCAAATATGCACCAGAAATGCCCACCATCTCTAGGAACATGCCCGGCCGCCAAGTCAC AGAGGGCACTGTCGACCTGGAATTCACCTGCCGAGCTGACGGCAACCCCAGACCCGCCCTGACCTGGGTG AAGGCCAAAAACGAAGGGTTAATGCTTGATCAGCTGACCAAGGAGGATGGCTCCCAGCTGCTGCAATTTA GGGAGGTCCGAAGGCATCATGGAGGGGTATACAAGTGCATTGCTAACAATAACATTTCGCCAAGGAGCAG CACAGATGACCAACTCATCGTGTATTTTCCGCCTACGATTCAAAATAAGGCCAACAACCGGACGACGGCC AACGAGGGCAAGAACGCCTCTCTCTCCTGCATCGTTGAGGGCAACCCCAGCCCAGACGTCAACTGGACAC GGCTCGGCAACCACTCGCTTTCGAACAGGACTGTGATTGTAAATACAGAGGTCAACAGTGATTATGAGAG CGTGGTGACGAGTACGCTGAACATCTTGAACGTACAGCCGGACATTGATCATGGGAACTACAAGTGCACG GCGATAAGCACTGCAGGAAGAGACGATGCTGTCATTATCCTTAGCGGAACATCAAAACCAGAGCCTCCTA CATCATTACGGATTGATGCGAGCCAGATCAAAGCCCATTCATTCATGATTTATTGGCAATTTGGCTATAA TGGTGGAGTGGAACAATCATACGTCATAACCTACTGTCTGAATGACACCCAACTGGACTGCAAGAAAATA TTTGGTATCAAGGAGCCTGAATATTTATTAGAAGACCTTGAGGCTTTTGGCTGGTACTCTATCTCAGTCT ATGCAGAGAACAGTAACGGTAGAAGCTCCGAGACCAGCGAAATCCTTGTATCTACTTCGCCTTTACCTCC TAGTGACTATGGTATCATTGTGACCAACGAAAATGGACTCATCACTTTGATCTCCAACCCTGCGACCGAC TTCCCTGGCGAAATCCGCTTCAAGATCGAGACCGAGGCAGAGGGGTACTGCAATCCACGGAGTAGTGCCT ACCCTGCCGATGGAGCCCCCGTACAAAAGCCTAGTGATCAGACTGTCATGGTGTCGAGCTTTGGAAGAGG AATGTGCAGCGTGCGGGAGACAGTTGATATGGCAAGTTTAAATCAGGGTGGCAGAGGAGCACCATCGACT GTAACATTTGCAATCATTGGAGCGATTGTATTTATAGCCTTACTACTAGTCGTCATTGTATTTGTTAGGA GAAATCATGACAGAAAAAATAAATCAACAAAGCTTCAACAATCATCAGTAAGATCGGGGCCTGAGGGTCA GCCTACAAACGGCCAGGCTAGGTCGTTCCTTAGTGGTGGGTATTATGCATATAATCCAGTATATGATGAT GTAGCGAAGGAGGACTTTAGAAAATCACAACATGAAGGAAGAATGGTAAACGATGATGGTTTAATCTACG CTGAGGTTGCACACGTCAACAGGCATCCCGAAGGCCAACCACCAATCAGAACGGAGGAACCCACCATATA CGCATCCCTCGACTTTGACAGGATGAACGATAACAAGATCCAAATCGATAAGCAGGCCATTGTTGACTCA AACAGGACAGCGGAGGAGTGCCCGGAGAAAGAAGCGCTCATTTACGAGAACGTCACACCACAAGGAATGC CAGTTTCACAGTGACGTTTGCGGAATGACAATGACCATTGAATTAATCTATTGGCTACAGGGAACAGATA ATCACCATGTCAAGCAGAACAATAACAAAATTGCTGACTCTATCGGGACAGCCGAGGCCTGCCTGGACAA AGAAACGCTCATTTACGAGAACGTCACACCACAAGGAATGGACGTTTGCGGAATGACAATGTCCATTGTA TAAATCTATTGGCTACAGGAACGGATTAGACGACTTCTGGATAGCTTATAAAGATAAAGGGTGCAAGGTT CCCTGTCGTGCTTCAAGTAACTAGAGATGGCAACTATTTAAACTAGTATGTGATACTAACAAGATTGCTA CATGTGTCTTTGATAGTCTCACTGTGGCTCTGGCAAAGCAGATGATGTCACCATCAAACTTTTCTATGAT ACGAAAGAGAATGCTTCCTTTTAGATATCGTTGTTCATTCCATCTTGACGTTTACAAAACAGATGACGAT CACCATCCACGCTATCTGGTGATAGCTTCAGTATGGAGATCTATTTGTTGTTATCGCCATGACTTATGCA AAAGAGACAACAAAACATAATATTTACCATCAAAATGTTCATTGATGTCGATAAGCTTCTTCCCTGCAAA AACATTTATTCTTCCATGCGTAGTTAAAACGATACTGAACTGATGAACTTTCTGCCCTAGCGTACTGTGT ATTTCACAGCGCCGTCACATGATCAACTTGCCAACAGTGCGTAACCCAATACCTAATTTGCACTTCAGAG AAGCTACGGAAGCAGTAAGTTACGAGACCATACTGCTACAGCTGACCTGAGATGGCCTTAGAGGGGATTT TGTGGTAGTGCTTCTAGGACAATAGGGCTTTAAGGGCAAGACAGTGATAAATATGGATGATATAGACAAA GATATCAATGGAATATGCCTGTGGGAGCAGGGCCCTGTTTCACAAACTTGTCATGAATAACTAATACTGG AATTCTATGACAACTTGCTCTCAACCAATCAAAATGAAACAATCACATCAGCTGACAGCACTTATTGCAA TTTGTTTAATAACAATTTTTGTGAAACAGGGCCCTCAGGTGACCATGAAATGAGTTTAATCTGGTGAGGA AAATATGTTCGGGTATTACAAAGCCATGAAGTTTTATGTTTGTATCTGTTAATGTTTGTATGTAAGTAAC TATGTTTGTTATGGTTGTATATTTGCCTTGTATTGTGGAAACTAGAAGGAGTCAAGATTGGATGTGTGTG AGAGAGATGGAAGATCGTAGGCGGAAAAAAAGATGGTCGAATATGAGCTAACAAGATTATATGCATAGTT ATAAATAGCTAATATATTATGACAGCATTACGCAATTTCCTTTTCTTTTGTCCTTTTTTTAAAAATGAAA CGTGCAGACTGTGTTTCTTATTTACAATGCCATTGTTATTGAAAAGTCAATGATTTCCTCATTATTTCCA AATTAAAGTGTAGGATAGAATATATTTTATAACAAGCCAGTGTATTTATGCCATAGTGCAAACGACATTA AAATATAAGCAAAGATAGAGTCCGTTTTAGATGATTTCCAATATGCATACATGTTATCAGGGAGATGATG TCAATTCCCTGATGTTATCTTGGAAACTGTAGTGTCAGTTATCGTAGTTTGCAAGTTTGTAGTTTGTGTA GAAGCTATTTCGCAGTTCAAGTAGGATCTACCAAAAATGTATTGATTTTTCGTAAGCAGATTATTCTGAT AATTTTTATATTTTTGTAGCTCGAAGATTTGCTGCTTGCTTAACAAATTTGTCTTCCAATTTGTGATCAA ATTGTTCATTGCCTTGCTTTAAAAAAAAAAAAGTACGACCTTGAAGATTGGGATTTTGTGAAAATGTAAC TATTAGGGATTCCTGCTTCACAAAAAACTCTTTCACATAGACTTGTAACCATTAAGTTAAAGTGGTAATT AATAGGTCCCCCAAATCTTTATATTAGCTGGCTTCTAGAGTAATCTCATTGTTGCCATAACTTGCCTTTT GTAAACAAAAATTATGTCAATGTACTTACATTAAAGAGTAGCTTACAGTCAACAGTAATGGTGTGAAAAT TGTTCAGACCTAAAAAAAAAGGTTCTTGTTGCTATTGTAGTGTAAACAATTAATGGTTTGGGTTAAAAAC CTCCAAAGAAGTATTGTCTGTAGATGTGGGGAATTATTTCATACAGTCTGTTTTCCTGTAGATGATGTGA AATATGCTGATTAAAACCTTAACAAAACTGGATGTTTGAAATACCTACCGTGTATGTGCTGAAAAACTAA ATTTGCCAAAATGGTTGGTCCTTTTTGGACTATGAAATATATTTGCATAGGTTTTGATATGTCACTCGTA AATGTAGATGTATATGAAGATCATCAGTTGAGAGCCAGGAGGGTGTTGCTTTTGTGTTAAAGGCTGATAG TAGTGGGTTTTTATGGGAAATTTGACACCACTTGGGTGTTTACTCAACAATGGGCTTCGTCAATCATCGA GAGTGGACTTTACAACCGACGAGTCTAATGTAATGCTTTGTGCCCTAGTCTACCGCTGGATGAAATTCCC ATCATGACATCATATTTCCCTCACCCTCCAGATCTGAAGGCGAGTTGATGAATTTTCTGGTGGGACCACG GGTTCGCTGCTTCATTTGCCCACACACACATTAATCAATAATTCAACCAAATCTGATGTCAGCGAATTAT GATGCAATACACATAGACACCTACTACTATATGTTAAGCCCTTCTGGCTCCCAGCAGAAAATATCAGTAT GCTGAAACACTAAATGCTTTGTAGGGTTGTCTTTTGGAAGAAGAATGTGGAAATTATTGTCTGAAGTATT GTTTGAAGCTTTAGATGAACTCAATTAACATCTGCTCTATTCACAACTCAACATGCTAAAAAACGCATAT TTTTTTTTTGAAAAGCACAGTGAAAATGAATGTTGTTATTTTCAGGCAGAGGTTAGATATGGAAATCTTT GTCTGAAATTTGAGATGAACTAATTGAATAACGACTGCTATATGCACAACTCACATGCTGAAAAATGCAT CATTTATTTTTAGCAACACAATAATTTTTTTTTTCAGTGAGAGGCTAAGAATGAACCCAGTGCATTATTG TATATAGGTGTAGTTTTACCCCAAGCCCCTTTTATAAACCAAAGAGGTCAAAATTGTGAAATTACACAAA TGTGTCTTTTTGTACATTAAATACATATGTGTGCACAATTTTTCGTAGTACAATTATCATTCTAAACATT CTTGCCAAATAACAGCATGTCGTGAAGTGGGCTTAGAATAAAGTCAGATATTTATTTATACCATTTTTGA CAATATTGTGAACATAACTCTATTCCATTACAATACATATGGTAGTATCACAACCATGTAGAATGTGTTC TTGTTCAAACCTTTGCAAATGAAAATACCAATGATAGTGATAATAATATGCTGGGGTTCTATAGCGTTCG ATACAATGACAATGTCTGTGGGCGCTTGACAGATATAGATGTATTACTAACCCCCATTATGGGATTCAGG CTTGCACACACACAATTTACTATGCACATTCTCCATTCCCTGGGGAGCATTCCAGCCAGGCATTTCTGAC CTGTTGACCCTACAACAGTACCTCTTGCCATTCATATATACACACGTTAAAATGTGCTGCGTCTGTGTTT GAGGCATTCATCATACGGAACCTGTCTGAACCTGGCCATACAGGTTCATAATGTACATGTAGTTTATTTA CACCTTTTTTGAAGTAATTGATGGTATTTGAATCATGCTTTGTGGCATACAATAATGTCAATGCTATATA ATTGAAAAAAGAAGTAGAAAAAAATGTTTCCGGTGTCATTTTCTTGGAACACAATACTTTTAAGCATGTA TACAACGCCTACATGTATATGGTTTATGCCTAAAAATGTAATATATTGTGATCTAGATGTGGGTATTAAA GTATGTATGCACTGGATATCAAAGGTTCTTATTAGACCATTGATAGGTAATCGTATGTGTTAATCATGAA ATGAATCCAATTCGTCTTATGAGAGCTACATGTACTTTGAAGCATAATGTTTTTCGAGATCTATGTGCTA GGACCTGAGTTTGAGCGTTCCAATGAATTCTTTTTGCTGGCAAAAGGACACAAGTTACTGCCTGTAGGAA ATAGAAAATTCACACCAGTATAGCATTTACACATGCAGAAGGGCATGATGGGGTCACATCAAATGTAAGA CCAACAACCTTGTGCTTCTGAACATTCTCAGCATTTTGAAAAGAGAGACCAAATACTTGTATGCATTCAT TTGTTTCAAAACTGACATTCCAAATGATTGAAGGAACTATTTGATCCGAGATAATTGGCATGTATGCGGT TGACTTGTGCATATGTTTTTATTTAAGGTTATGGAAATTAAGGTTTGAAAAAAAAAGAAAGCAAATGGCA TTATTTAAATGTTTCCAACTCGACTAAATAACTCATGCCTACATTATAATGGGTATTTCCTGTCTGAATA CAATGAGAGAAGGAGAGGATTATCGTCTGTTAAAATTGTCTTTGTACTCTGAAATGTTTGCACATGCGGC ACATATCAAGCTTATATAGTTATGCACATTTCTCTGTAAAGATTTTGCGTTCTTCTTCCTTTATGCAAGG TATACATAGTCCATCTTTGTAGCAGATGATTTTCTATTTTATTGTAGGTATTAAAGATAACATTGCAATC ATTCCACATAAACGATGTGTATTTAAATATTTGAAAATAAAACTACAAAGAGAACTTTGTATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
