Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041597236.1 PREDICTED: Lytechinus variegatus small subunit processome component 20 homolog (LOC121406213), mRNA GACATGTCCACGAGCTGCGCTAGCCTGCGACAGCGTGATCTGTCTTTTCTGAAATATCTTGTTAATTAAC CTAGGAATTATTCAGAGTCTGTTAAGGACTTATTAGAGGAAGAATGGTGAAAACAAGCTCCAAATCATCT CATCATAAGGAGACGAATAGATTCAAGTTTCAAACCTTCTCAGATCGAATAGCTCACATTAATATCGATG TCGTGCACAGGAGTAAGAAGACTCAGGCTGAGCCCCAGGATGCAGATTCATTTTTTGCTGAAGGCTTGGC GAAGTGGAGAGAGCTCAATTGCACTCAAGATTTTGTCAACTTCAGCCATGAGATATCTGATCAAGTTCAG AGCTTTGCTCAACTTGTCCACTTTGAAGACCAGATAGTCTTGGCATTGCAGACCCATCTGAAGGTACCCA ACAGCATGGCTTATATACCGTTACTTGACCTCGTGGTTCAGCTTGCGAGAGATCTCCAGACAGACTTCTA CCCTCATTTCAAAGATTTCTTTGAGATTGTCGTTTCTCTCTTGGACACCCAGGATACGGAGCTGATAGAG GGCGCTTTCCAATGTCTGTGTTACATGTTCAAATATCTCTGGAGATATCTGGTTAGAGATATTCAAGACG TTTACAAGATGTATTCTCCTCTGTTGGGTGAGGAGCGTAAGGAGTACATTAGACGTTTCGCTGCCGAGAG CTTTGCGTTCATGATGAGAAAGGTGAAAGATCATGGGGATTTATTTGACTTCATGCTTGGAAACCTACAG GATAGCCCTCAGCAAGCCAGAGGTCTAGGTCATCTATTGTTTGAAATGTTGAAAGGAGTTAGACATCAGA CTCACTCGTCAGCTGTAAGGATTTTACCTGTGTTACTGTCTCGTCTTGGTCCTTGTCGCCATGGTAACGA GAATGCAGTCAGTCTTCCATGGGACTTGGTCCTGGAATGCTTTCAGGAGATGTTTAGGTGTCTTACTAAA TATCTGAAGAGAGAGCATAGCCAGGTCATATGGGATGCACTATTGAATGAGGCATCGTTTCTTGAAGGCC AGACCGACGCTGCTGGTCAGTTGGACAGCTTGGTACAGCTTCTTGACCAGATGACCAGATTTCGCAATGG AAGTTTGATTGCAAATCCAAGACAACTCCCTCAGTATGCTGTAGAAGCTGTGAAGCAGCAATCACTGCCA GAAGCCTATGGGAAGACGTCGCTTAGTCTTGTCTCCAGCCTACTGCAAGCAACCAACGGAAATCTACACC ATGAAGATACCACTGCTCTTGTTGATTCGGTATATCGGAGCAATTACAGCAGTCAGCTTGTCTTTGAGTT CAGCCGCTCGGTTTTTCACATCGATAATTTTGAAGAGGATGTTCTACCCGCATTTTGTGAATACTGTCAT TCCAAGATGGCTGCTCAGGATACTGTTACCATGGAGACGATGTTTCTAACATTGGCTGATCTTGTTACCA CCAAGCGGACGTCTGTGACGGTGGGAGAAGACATCGTCGACTACAGTCCGTACCCGGTAGACTTCAGCCG ACAAATACACATCAGTAAGGCCAAGAGGAAACAAGGGAAGAAGGAGAAAGACAGTGCAAGGAGTGTACCA GCCTACCTTACATCGTTCCTTCACTGTCATGAGGACTATAAGGAATCTCATCTCTGGGCTGCTCTCGTCT GCATTCCTCATGTCAGACCTGTGGATAAGTCAGAATGCTGTAAGAAGCTCCAGGATGTTGTGTTGCATCT TCTTGAGGCTGCTCTGAAATTAACACCACAAAAGGAAGAAACCAAGTTATACATCCTCTCACAAGCCATC CAGAGTCTCCTTCTGACCAGATCAGACTCACCCAGTTCAGTCCTGGGTGTAGATAGAATCATGGCTCTTG TTAAACGTCACCCGTCCTCACCGTCCGTCCTCCTAGCTGTAGATTGTTTTCTTAGCCTGTGTTCTAAGAT GGATGATGATGAAATCCTGACTTCTGATACTTTAACATCTCTTTATGAAGTACTGGAACAGAACCTATCA TTACCACATAGTCAGGTTCGTCGGCTTACTCTAAGAATACTTGACAAGTTTCCTGTTGTCTTGCCAGCTA TCGAAGACCAGACAATGCCACCAGTATCAGTCTTCAGACTTTGCCTGGAAGCTGAAGAGGCTCCGGTAAC GGTAGATAAGTACCGTGAGAAGCTCAAGTGTTTGGGTCATTTACAGTATAACACCGTGAAGAACAATATA CCAAAAGGATTTGAAAAGGTTCCTTTGAAGTTCCTACTTGGACAACTGTACATCAACTTCCAGCTCTTAT GGGAGCCAGTGGCTGACCTTATCAAGTCACATGCCTATGGCATGGAGAAGGTGTCTTTTTGGAGTGTTTT CACCGAAGCCCTACACAGCGCCGCCAAACTGAATGAAGACAACCTCTTCTACCATCGATCATCATCTTTC TATCAAACATTGCACACCGCCCCCCAAAAGCATCGAGTCACAACCGTCCAACATGGAAGACTTTTTCATC GTCGCTACGACGATGATATGCAGAGTTCCGATCGGCCGGACCACATTAATTTTCGACGACTGTTGTGGAA GGCGATGGAGGGTTTCGTTGTGAAGGCGGAAGGACGATCTCGAGAGCTCTCGCCACTCTTGCTTCGATTC ATCAAGAATGAGTATTATGTGACTGATGTGAACAGTGCCCCCACTCAGGACCTACGACTGGTCAAGAATG AACCGACCAGCCAATCAGGAGATGATGAGGAGGATGAGAAGGAAGATCATAAAGGAATGAAGAAACGACC GGTCTACAGGTCTATCCTAGCCCATCTCCATCTATTCAGCAAGTACAAGGATCCTAAATCCCTATATCTT GAGCCTCAACTCAGAACACTTTACATGAACCTGCTCTCAAGTAGAAACGCAGACATTCAGAAGGCCGCCC TCGCTTGCCTGTATACGTACAACTACAGATATCTGATGCCGTACAAAGAACAGCTTGATGAGTTAATGGA TGACAAGCTCTTTAGAGATGCTTTGGTTCACTTTGGTATTGATGAAAGCACTGGTATTGTTGACCCTCTC CACAGAGAAGGACTGCTGCCTATTCTTTTCAGGATCCTGTATGGGAAGATGTTGAGTAAGACAAGCCCTG GAACCCAAGGCAAAGGAGGTATAGCGATCAGGAGATCGGTCATTCTTAGGTTCATCGCTGGTTCTACCCC GGAAGAGATGAAGGTCTTCATGGACCTTGTAATGGAGCCTTGTAAACATCTTATCAAAGATGATCTACGT ACCATGCGATCTGAGTGGCTCTCACAAGACCTTGGTGCAGTCGTTCCACTCAGAAAACAACACAGTATGC TAGACACCATCGGAGTAATCTTCAGTAAACTAGGTCATCTGATGGACTCATACCGCCCTCTGCTGTTCCG TTTGATCACATGTGCCGTGGCCAGCTACAATCTGTTGTTGTCAAGGAGAGATGAACTTCAGCTGTTCTGT AGAAACCAAGTGAAGAATCTACGTCAGGTCTGCATGCAGAGACTGATCGAGTTCTTCGGCCGATTCAACG AGTATCCCTACTCGGAGACTGAGATTGACGCTGTGTTTGAGGGAGCTGTGTATCCTCAGTTGAAGGAGCT GACTTCGCAGAGTGTAGGGGCTCCGTCACCGTTACTCAGGCTAGCTTTCACCTGGAGCCAGTACACTAGA TACCACCATCTACTAATAAAGCCCCACCCCGATGACCTCAACGTGACCTTACTGCATCAGGTCATAGGCC TTCTCTCGGTTCCCAAGGTCTGTCAGCCGGTGGTTGCCATGGTGATGGACATCATTGAGAATCTTCTGAT GTTGAAGACCGAGGAGGAGGAGGAGGAAGTTGAGGCCGATCTTCAGGACGAAAAGGAATCTAAACGGACA GGTGGTCTGAGCGCCGGCATATCTATGCTTCTACCTCACATTCCAGCTATTTTGACACATCTCAATAGTG CAATCAAAATACAACACAAGCCTGGATCAAAGACTACCCCGTCATTGCCTGTCAAAGAGTTAGGCATCCT CTATAAGATGAGTGGTTTTGTTGAAGCGTCGGATCTTTGTTCATCTCTCGTTGGATTGCTGCTGCCGTAC CTTCAAAAGTCAGCTAGAATATCAGAGAATACAGAGGTTGAGATCCTGAGTACTATCAAAAACTTGATGA AACTGATAGATGATACAAGCTGCTTCCTAAACCCAGTATCCCGGCTTCTCTACCGCACAACATCCCGCAC CTCGCGCCTTGTCCTCGTCCAAATCTTCTCCGCCATGGCCACCAAAGACTCCGCCCTCGACGACATCGCC CGCACCGTATCCCGCCTGAATGCGTGGGACAGGAAACGCTTGGATGAACCCGATTACACGTTACGTCTGA AAGCGTTCCGACTAGCCAATCAGATGTTGGAGGATGATAGCCGGAAGTTGGACGTGCGGTTCTTTACTCC TCTCATCCACAACTGCTTCTATTTCATTCTCAAGATTGATGACATGGCGTTGAGGGATAACTCTAGCCAC ATGATCAACGGTGTCATCAAGAAGCTCCAGAAGGACGACACGGCTTTCGTGACGATCGTTGAACATACCT TTATCCCAGCGTTGAGAGATGGTCTGAGGGCTAAGACAGAGGTTGCTCGCCATGAGAGTTTGGCCATCCT CTCTCAGCTGGTCCAAGCCTTCCCCTCTCATCCACACTTTGAGACCATGTCGGTGCTTCTTGATCCTGAC GTTGAAGTAGATTTCTTTGAGAATATCAGACACATACAGCATCATAGAAGAATGAGGGCGCTTCGTCGCC TCTCCAAGTTCTGCCAAGAAGGGAAGCTATCGGGGAAAGTCGTCCAGCATTTTCTCCTTCCCGTGGCGAC CTCGATGATCTTTGACCCCGAGGTCGCGAAGAACATGAACCTGGTGGTGGAGGCCATCGCGGCTGTGGGT GGTATGGCTACCGTGTTGTCATGGCAACAGTATCTAAGGCTTCTAACCCAGTATCTGAGGTTGCTCATGA GGAGCGTAGAATTTCAGAAGTTGGCCGTCAGGTTGATTGTTGCTGTTTTGGATGCATTTCACTTTGATCT TTCAATGTCTGCTGGACTAGAAGACAAGGAGAAACCAGTCACACAAGATGAAAATCAAGATGGCCGCGAT GAAACTTCCACCGGAGAGAAAGAGAGTACCGAAGCCAAGGAAGATGGAGATGATGTTGATGATGATGATG AAGAAGCTGAAGAAGAAGATGAGGAAAGCGAAGATGATAGTGGTATAGATGAAGAGAAGGATAAGATAGA GAAAGAGAAGGAGAAACAGGTCGCCATAGCAACTAGGATTCATCGTACCATCGTCCGCAGCATCCTGCCT CAGCTTCATAAGATCATCACCAAGAAGACTAGAAGCGAAGGAGAACACAAGAAAGCAAGGAATAAGATCG CCCAGGATGAAGAGGTTCTAAGAGTACCCATAGCTCTAGCCGTCATTAAGCTGCTCCAAGCACTCCCAAA AGAAACTATGGATCAACATCTGTACAGTGTGCTGTTGAAGGTGTGTCAGATGTTACGAAGCCGTTCCCTG GATATCCGTAACATCACCAGGGACACTCTGGTCAAGATCCTAGACTCGTTGGGTGTGAAATACTTTGGTC TTATCCTCAAGCAGCTCAGGAACAGTCTTACAAGAGGGTTTGAGCTTCATGTTCTCGGTTTTACTGTCCA CCTGCTGCTCAAGAACATCTCTCCTAAGTTGACCTCTGGTGACCTCGACCCCTGCTTAGACTCACTTACA CAGGTCTTCAACCAAGAACTCTTTGGAGCAGTGTCGGAGGAGAAGGAAGTAGAAGGCATTGTGGGAAAGC TGCTTGAAGCTCGGAGCATAAAAGCCTATGATTGCTATGAGGTGGTGTCAAAGTTCGTAGGTCAAGGGTC AATCACAAAGCTGATCACTCCTTTGAAAGAGATTCTGGATAGATCCAACAGCCATCGGGCGGTGAACAGA GTCCGGGAGACACTGCGGAGGTGCACTATGGGTATCCAAGAGAATGCTGGGATATCCCAGGAGGCTTTGC TCATCTTTATCCATGGACTGACATCAGAAACGCTTCCTCTGCTCAAACCAACTGCAAAGAATGAGAAGAA AGACAGCGTGAAGCCACATGAACGACCGCCGAGTACGTACTTATTACTCCCAGCACCAACAAGAGCGGGT CTGGTACCCGAGACTAGCACCAAGACTCATATTCATCTGCTCGTTGAGTTCGGTTTACAGTTGCTAAACA CCAGTTTGAAGAGATCCAAGTTTGTACCAAGTAGCGAGGAGCATCTTGGGATGCTTGATCCATTCATAGT CATCTTGTATCGGTCGATGGAATCGCAACATACGCGGGTCATCACATGCGCACTAAGATGTCTAAGCTGG CTGCTGCGTTTTCCACTGCCCTCGTTGGGCAAAATGATAAAGCAACTGACGCAATCCCTCTTTAGACTGC TTCGTAAACATGCAAGAGTCGGGGCAGCGAAGGGCGACAACTTTGAGCTCATGGTTGTCACTTTCAAGGC TGTGACGGTTCTGATCCGTGATGTCAAACTCTACACCATCAATGAGAAGCAATTACAAGTCCTGCTTGCC TACGCAGAAGAGGATATTCATGATTACACAAGACAGGCCACTGCATTTACAATGCTCAAGGCCATTATGA CTCGGAAGCTCGTAGCTCCTGAAATCCACGGCATCATGGGTAAAATCTCTGAGCTCTCCATCACGCAACA ATCTAATGCTGTCAGATTACAATGCAGACAGGTGATGCATCAGTTTCTACTAGACTACCCACTGGGCAAG AAGTTAAAGCGCCATCTAGAGTTCTATGTGAAGCAGTTGAGTTTCAGTGTAGAGTCTGGACGAGAGTCCG CCTTAGAGATGTTAGCGACCATCTTCTCATCCTTCCCCCAGAAACTTCTTGTAGAGCATGCTGGATTGTT CTATATCCCCATGGCAACGAGGCTCGTGAATGACGACTCGGCTAACCTCAGAAGACTCAATGCGTTGGCA ATCGTCAGTCTGCTTGAGAAGTTAAGCCTGGAGAAGCGTGACGAGTTGTTTGGCATAACCCTTCACTGGT TAAAAGACATCAAACCCTCTCATAAGAGATTAGCGGCTCAGCTGATGGCTATATTTGTGGATGCGGAGAG AGAAAATTTCAGTCGACGTCTTTCAGAGATACTACCCGTCATCACGGATATTATCAAACCTGAAAATTTG ATAGAGGAGGAACTAGGAGAGGAGAATGAGGTGAAAGCTCAAGACCATCTCATGTTTCATATCATGTCGG CTCTGTGTAAAATCACCAAACAATGTCGGCTTTCTACCTTTAAAGACCAACCTGAAACGATCACATCTAT GTGGGAATCTCTGGAATCGCATCTCCTGCACCCTCACTCCTGGGTCAGACTGATGGCTGCCAGACTCTTC GGAGAACTCTTTGCTGCCTGGCAGCCGCATCATCTGGTTGCCATAGTAACGGGCAAAGATACGTCGGAAG CTGCACCCGTCACCCCTTCATCTGAGCGACATCAGAAGAAGAAAAAAAAGAAGAAGGGGATGACGGTTGC GCAAGATGGAGGAGAAGGTGGCGTCAAAGCAGACGACGGTAAGAGGATGGATTATCTCCATGGTAACCTG GTGCAAAGGATGCTGGGATTGGCGGATAAGTTCTGTAAGCAGCTTAATTCAAGCATGGTCACCAAGGAGT TGGCAGAACAGGTGATCAAGAACCTCATTTTCATTTCCAAAGTGGTGAGGAGATTGAAGCCTGAAGATAA GGTAGAACAGATAGAAGATGAAGATGAAGAAGCGGAAGAAGAGAAGAGAGAAGGATCGACAGAAGAGCTG AATATGTCATTGCTTGTTAAGAGGATGAGCAGGATAGCAGCTACTGAGGTTGCAAAGACTCCAAAGGTCA CCCTAAAGAGGAAGTCGGTAATCAAGTGGATGGCTGCAATTGCGTTAGACCTAGGTCAAAGTTCTCTACA GTGTTACCTTCCCAGCATGCTTCATGTTGTGGGACGAGAGGTCAATGATCGGTCAGCCCAAGCTGATCCT GAACTGAAGACGCTATGTCAGGAGGTCCTGGAATTGTTGAAGAGCCTAGTTGGATTAGATGTATTCTCAG AAGTCTACGCGTCAGTCCAACGTGATTCCAGTGAAACCAGGTTGGCCAGGAAGAGGAAGAGGGCTTTAGA GGCTGTGGCTGATCCTGAGAAAGCGGCTCTGAGGAAAATGAAGAAGCAACTCTTGAAGAAGGAATCAAGG AAAAGAAAGCTCCAGCAAATGAGACCTACGTATCATATAACTAAGAGACCTAAGAAAACATGAGAGTAGC CCAGGGGATGTATTTATCCTAACGTGTGATGGAAATGGATTGATCCTTGTAAGATACATGCATGATTTAT TATCAATAGGTCTAATGCCAATTCGTCCGATTACCAACTCTTCTAATATCACTTGGACTACCATCAGTTC GTCCACTATCAACATGGCCTAGTGCCCATTTTGTCTATAACCAGTTGGTCCAATAGCAATTTGGTCTCAT TGGACTTGGTGTTAATTGGGCAAAATGAATGAAAATAGAATGGATATTACACCAACTGGCTATGAGACAA AAGCCAGTGTGGCTTTGGTATCTACCCCTGTGCAAACTTTACATGAATTGGAATTAATACAAGAATCATG CCATCAAACAGTATTTGTATTTCAAGTCTTTTAATTTCAATAATTTTATATATATGTATAGATTACAGTA TTTTATACTGACATTTTCAAATCTACATTATGTGCATCAATTTATGTTTATGTACAAGCTTTATTGAAGC TGAAGTCCATGCCAGCAAACATTTGGTTGAATTAAGAAAATTAAACAAGCATAGCAGTGAAAATGTAGAA AGTGGATATACCTCAAAAAATAAGAAAGTTAAAACATTTAAAAGTTTTTCTTATTTCTAAAAAAATAGTG GTTTGCATATCATAGGCTTTATGGAAATGATGTCACACACTATTTCTTTTAAGGCCTGGTCACACCGCCC GAGCATTGTTGGAGCGGTAGGGAGAGGGGTACAATTTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds