Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041622381.1 PREDICTED: Lytechinus variegatus POU domain, class 6, transcription factor 2-like (LOC121426181), transcript variant X3, mRNA CATACAGAATGAAGCTTTGGGATTACGATTGCTGTAATACAACACCGTCCAACCATTTTATCACCTTCAA AAGGCTTGAAATTCGTTGGCTACCAGCTCCTGAAGCAATGACTGCTCATTAATTATGGATGTAACGGCCA CCAATCCTAGCTTTGCACAGATAAAGGTCAAAAGCGAGCCGGGTATTGCAAGAATTGGCACCACTCCCTC TGCAGTGTCGACTCAGCTTATCACAGCGGTACAGCTTGCAGGAAGCGTAGGAGCCAAGCCACAGAGTGCT ACCGATCAACTTCTCCTGGCCATGCAGAGCGCAGCGGCCAACAGTAGTGCTCTCCGGACCCAAAGCAGTA CAGCCCTCTCCTCAGGACCAGGGACTAAAGGATATCAGACAGGTGGATCACAAGTCAGTAGTCAAGCAGT AGGAAGTCAATCCCAACACCAAACACAGCTATTAATGAGCCCTTCTCTTCAGGGTGCACAGCCTATTCTT GCCAACCAGCTATCTGGTGCCCAGCAGTTGTTGACCATCCCGTCAAACGGCGGTCAGCAGCAGATTTTGA CCCTTCCGATCACCAACGCTGCTGGTCAGCAGCAGATCCTCACCATTCCTGTCACGCTAGCCCAAGGAGC CGGAGGGATCCAGTTCCTTATCCCCACAGGAACAGGTGGTCAGTTCTTAGCGTCACCCAACCTTGGAGCC ATGCCCTCACAGGTTTTGCCATCAACTCTTGCTGCCATCCCCAGCATAACAAGTAACACCAATGTTGTCT CCTCAGCTGCACACTATGCGAAAACCAGTCAGATGACCTCAGCCACCACGCCCCTTCCTCCAGTATCGGT ACTCACCGGTCAGACGGGGTTAGGGACGCTCCCCTTACCTCAGGTTTTAATGGGGGCGGGGGCGCAGGTG CTGTCGGTGTCGGCACCCAGCAGTTCAACAACACATACGCACCCTAAGACAATCAGTACAACAGCAGTTC CTAGCCTAGTGACAACTCAGAATAGTCAAGCCCTACCTTCCCTTGCAACGGTAACGCAAGGACTAATGCG GACATCAGCAAATCAACTCAGCTTATCGGCACATGGAGCCACAACACAGTCTGTGCTTGTTTCTCAATCA TCTACCACCACCTCAAACCAAACCTCTTCCCTCTTGGCATCTCATAAACTGAGCAATGCTTCAAGTGCCA CTGCACTATCACTTCATGGACTGGCAGGTCTAAATGCTGCCCAAGGCACGGTTATCTCCCATATAGCAGC GGCCCAGGGATCTCAAAGCAGTGTAACTCAGATACTTCCTAGTCAGCTCGTTAGAAGCTCTGTAGTGTCC AGTCAAGCAAGTCATGTTACACAAGTCCCTCCCGGGCATCAGGTTGTCGTTTCCACGACGACGGCGACGA GCGCTGGCAACCACGTATCGACAGGAGGGCTGTCGAGTCCAGGTAGAGTGAGTAACATGGGTAATGCTGC TGAAGTGGATGGAATCAACCTGGAAGAAATCAAGGAGTTTGCCAAGGCTTTCAAAATTCGAAGATTATCT CTTGGTTTAACGCAAACACAGGTTGGACAAGCCCTTAGCCAGTCAGAAGGACCAGCTTACAGTCAGTCAG CTATTTGTAGATTTGAAAAGCTTGATATCACACCAAAGAGCGCTCAGAAGATAAAACCAGTTTTAGAGAG GTGGATGGCCGAAGCTGAGGAGAGGCACAAAAACGGTCTGAATCAACTCACAGACTTCATTGGTAGCGAA CCCGTTAAAAAGCGCAAAAGACGGACATCCTTCACGCCTCAGGCTCTGGAATACCTCAGTAGGCACTTCG AGAAGAACACGCATCCAACCGGCGCTGAAATGACAGCCCTCGCCCAGGAGCTTAACTACGATAGGGAGGT CATCAGGGTGTGGTTCTGCAACAAACGACAAGCTCTGAAAAACACAATCAAGAAACTGAAAGCTGCCGAG GCTACCATGAATAATAACTCTGAGGAGGTGGAGAGGTCGACGGTTGTTGTAGAGAGTCCCGAGCATGTGT AATGACCCTCTGAAAAGGAAAATACAGGGAAGACAATCATGGTATTCTTGAGACTCTGGGAGATAATTCA GATTGGATGATGTTGAACAGACGCAGAAACATATGAATGGGGCAATGATGAACCCAAGTATGAAGAGTCA TGAAGCTGGATGGAATGCGACCAAAGAAAAACTGAAAATAGAGCTGTGCTCATATACGAACCTGAGACCA GATTGACAACTGGTTCTAGATGAATGACTTCTCACATTATATTTTATTTTATTTCCTCACTTTCTACATT CTTTTTATTTTTTTAAACTGTGGATCAAGAGTAAATCTATTCAGAAATCATCTGGATAAAATGATAGCTG GTGATAATCAAGTACTTGAGTCCTATATTGTGGAATTCTTCTTTATTTCCAGCTTTAATTACTGCTGTCA TTGTTTGCAGTCAATTGCTGACATGAAATTTGGAATCATGACTTATGAAATACAATGTAAATTGACTTCA TCAGTATCAAAATTGCTGTCACAACTAATTTAGGGCCTTCCTTTTGAATGTATGAATTCATCAAATATTT TTTTTTTGTTCAAGAAGGACCAAAAAGTGTATGATGCGAAATTTCAGGTTTGTGTGGACGTCATATTACT CAGATGGAGACTGAACGATGCATCGAGAGATAATAAAATGAGATTGTTTTTAAGATTGTTACGATATGCT GCTTGTATGACAGCGATTGCTATCGAATGCTGGTTAATAATTGTCTTTTTTTTTGTACATCCACCGTAGG ACCAATGTTTCACACTGGAGTAGTGAAACCTTGTAACTTTTTATTTTTTAAATATATATGGTTCTAATGT GAGTGCTTAGTTTTTGTAATATTTTCCACTGGCTTGGAAAGGTGTAGATGAGCAATGTTTGCTTCAACAT GTATAGATGTGGTGCTTTGAATGAGAAAAAAATAATGTAAAATATAACTGGCTTATTTATTGTCCTTTTT AAAAAAAAAGAAGAAAATAGTGAACAAAATTGCGTTGATAAACCAACTCTTTATGCTACTGCTGTTTGTA CCCTGTAGAAAAGATTCTATTTGTTCGTAATTTGTGCAATGGGCGTTATTTAGCCAAGCTTTTTCCTTGA AACATATTTTGGACGTGAAAATCTGAAACTTATAATTCTGTTTCTGAAATAGGGCAGAGAAGGATCATCA ATGTGGGTACATTGTAGTTATTTTTGAAGATCTTAATGTTATACAGCATCTTTATCTTCCATCTGTCCTC ATCATAGTGATTTTGCCATCTAAGTATTAGCTCACATATTAACTTTTCTATGTGTTTTCGTAAGTTTGAT TATGAGTATGTAGTCAAGAACACTACACAGGAAGCTGTAGCTGGGACTACATCAATGGGCATTTTACATG TGATAGGATAAATTATCATGGCATGAATACTGTTTGGCTGTTTGATCTCAAAAGAAGAGCTCTGTTTGGA GGGAAAGGCTTTACTATTGGAACTGAAATATGGTGATTGTGAATCACTCAAATAATGTTTGTAATTGTGT TTTTTTTTCTCCAAATGTCATAAATGATTTGAATCAGTCCTATGTGATTGTGGTATGATGAACTCAAAAT GTGCCACTTTCGTTTTATGTACTTAATACATTAGAATGTTTACAGAATCTGTTCTTAATGCACTTGTGTG TTTTTGTACCCTTTTCCCCAGTTTTCCTTTCTTCATTTAACTCCTGTAATACCTCGTATTTGTAGCCATT TTCCATCCTGTATTTCTCTTTGTAAGTTTATTCGAAGTGATTTGTACTTTGGTGTACCTAATTATCATAT CGATTTCTACGTAATTTGAAAGAAAGAAAAAAATGGAGTTTGTCATTGACTATTTGTAATAAGTAAACTG TGATTAAGTAATAGTATTCATACATAAATTTATTTGTTCTTAAAGACTTAATACTGATCAATGTCAGTCT TCATATTACCATAATTTTCCCAAGTTTTCATCCTTGCACATTTGTTTAAAATTGTTTTCAATGTTTGTAG CTTGTTTTAGATGGATTTAGAACACATTTTAACACAAATGATTATTTTGCCAGCCCTGGTTTTATGTTCA AAATGCCTTGATATGGGACTTGCTTTTTATTTGTATATCATCCTGTACTTGTTTTATTAGATTTTGCAAT ATTTATTTTGCTTTGTATGTAGGATATTGATGTATATTATTTGCTTTACTTGAAACCATTCCTCTCTCAC TTTTGCCATGAGGTTTATATTATTAGAATACAATTATGATTTTTACTTGATGAAGAAAGAATCTTGTGCC CTTTAAAATCAGTCATTTTTTTTAAATCCTTGCCCTTTTTGCTGAATATATGCCAGTTTTAAAAGGATTG TTTGCGCATGTTTGAAGATTATACATGAGACCCACACATGACATAGGCCACTGCTGTTCATAACTGAATG TGAACAGAGGACATAAACACATATATGATTATTATACGTGAATGTGTACATGAGATACACAGGCCTATGA TGTTTACACATGAATGTGTACATGGGACCCACACACACACATATGATCATTATATGTAAATGTGTACATG AGACACACAGGCCCATGATGTTTATACCTGAATGTGTACATGGGACCCACACACACAAACATATGATTAT TATATGTGAATGTGTACATGTACATGAGACACACGTACAGGCCTATAATGTTTATACTTGAATGTGTATC AGGGACTCACACTCACCCATATATGATAATCTTATGTGAAATGTGTACATGAGATACACAGGTTTAGGAT ATTTATACATGAATGTGTACATGGGACCCACACACACACATATGATTATTATATGTGAATGTGTACATGA GATGCACAGGCATATGGTGTTCATACTTGAATGAGTACCTTTGACACATACACACATATGATTATTGTAT ATGAATGTGTACATGAGACACACAGGCCTATAATGTTTATACTTGAATGTGTATCAGGGACACACACTCA CCCATATATGATTATCTTATGTGAAATGTGTACATGAGATACGCAGGACTATAATGTTTATACTTGAATG TGTACATGGAATACATGTACATACACACATACATATATGATTACTCTATGTGAGAGTGTGCATGAGACAC ACAGGGCTGTGGAGTTTATACTTGAATGTGTACATGGGACACACACACACATATGATTATTAATATGTGA ATGTAACCATGAGAAACACCTGTAGGCCTTGATGTTTAGACTTGAATGAGTACATGTGACCCACACACAC ATACAATTATCATATAAGAATGTGTACATGAGAAACACAGGCTTATGACATTTATATTTGAATGAGAATA TGGGACACAAACATATATGATTATTATATGTGAATGTGTACATAGACACACACATACTATGATGATTATA CTTTAATGCGTACATGAGACACAAATACATAGATCTCATTTTCCTTGAATTTGAACATGAAACACACACA CACATATGATGAGCCTATGTGAATGTGTACACAAAACATACACACACCCATAATGATTGTACAATATAAA AATTGAATATATTTTACACAAACTAAACTTTGCTTTGACTTTTGCAATAATTCCATTTGACACTTGAGAC CATGCTGTATAAAATAAGATCATACAGGTAGCACTAAAGGCTTTAGGATGATATTAACCCATTGCAAACC AGAATTGGTGATCTATGTACAAAGCCAAGGGAATAACAATTCAGCTTACAGTGGTTTTACCCAATGAGGG TAGTATATAACAGTCATATCTTGGAAAAGAAAGTTGACTTTATTATTATGTATGCGAGCAAATTCCTTAC AAGTAATATCTTCTTTTGCGCTCATCCGTTGTATCCAAGGTTTGGTTGATTTCCATCAAAAATAATTTAA TGCGGAAAGATTTTCAGCCTCTACAAAATTGTGGACTTGGTGTGTTATTGCAGAAGTAATATCATTTCCA TTCTCTCCTTTTTTCATGGTTGTAATGAGAATAATAAATATCTAATCACAAAAAGTATGGGGTTTTGACA AGACCTACGCAATTGTATTTTCAGGCAACTGAAGAAGAATAATCATGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds