Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041622383.1 PREDICTED: Lytechinus variegatus POU domain, class 6, transcription factor 2-like (LOC121426181), transcript variant X5, mRNA GTTACATGCTCTGATGCTTTGGCGGGACAGTCTCCCACAAACACACACTCTCGCACTATATGCTCACCCA CCCCTTCTCTCTCTTTCTCTCACACACACACAAACTCCAGTATACACCGAGGGAGAAGCAAAGCAATGCT GTAAATCAAATCCGGGGCAACCCATGCAAATGCAGCCTAACGTGATGCAAAGAGGCCCTGTGATGGGAGA GAGGGGGGTATTCGATATAGGCAAAGACAAAAGTCTGAATTCAATTTGCTCAGTTTGCTGGAAAATTTCC ATCAAATTATAACGCCATTTGAATTGCTAAGCAAACTGGCCATCAGCATACATTTGTATGCTTTTTTTTC CTCCTGCAGGCCAGAAGATATTGTCCATCCATGTTAAAAGTGTCTGCTTGTATGAAAGATTTAGAGAGTA TCTGCCTTTTATAATGTATTCATGTCTGGTTGGATAAAAGGAGGTCACTTTGAATATCCGTTGGTGGAAG GGATCAATATAGATAGAGGAACCATGTTGTTAACGTAGCAAAGACAATCTTTTCTCGAAAGTATCGCTGA GACGAATTAAAGAGAGGATATACTGAATGCTATTCTGCTATGCTTTCCTCATTTGGTGACCGTTTGGGTA TCCCGTGTGCGACATTTGTTTGTTGCCCAGAACGAGAGGAAGTGATGGTTTCTCGCTAGATGAAACGTGC TTGCAGGAAGCGTAGGAGCCAAGCCACAGAGTGCTACCGATCAACTTCTCCTGGCCATGCAGAGCGCAGC GGCCAACAGTAGTGCTCTCCGGACCCAAAGCAGTACAGCCCTCTCCTCAGGACCAGGGACTAAAGGATAT CAGACAGGTGGATCACAAGTCAGTAGTCAAGCAGTAGGAAGTCAATCCCAACACCAAACACAGCTATTAA TGAGCCCTTCTCTTCAGGGTGCACAGCCTATTCTTGCCAACCAGCTATCTGGTGCCCAGCAGTTGTTGAC CATCCCGTCAAACGGCGGTCAGCAGCAGATTTTGACCCTTCCGATCACCAACGCTGCTGGTCAGCAGCAG ATCCTCACCATTCCTGTCACGCTAGCCCAAGGAGCCGGAGGGATCCAGTTCCTTATCCCCACAGGAACAG GTGGTCAGTTCTTAGCGTCACCCAACCTTGGAGCCATGCCCTCACAGGTTTTGCCATCAACTCTTGCTGC CATCCCCAGCATAACAAGTAACACCAATGTTGTCTCCTCAGCTGCACACTATGCGAAAACCAGTCAGATG ACCTCAGCCACCACGCCCCTTCCTCCAGTATCGGTACTCACCGGTCAGACGGGGTTAGGGACGCTCCCCT TACCTCAGGTTTTAATGGGGGCGGGGGCGCAGGTGCTGTCGGTGTCGGCACCCAGCAGTTCAACAACACA TACGCACCCTAAGACAATCAGTACAACAGCAGTTCCTAGCCTAGTGACAACTCAGAATAGTCAAGCCCTA CCTTCCCTTGCAACGGTAACGCAAGGACTAATGCGGACATCAGCAAATCAACTCAGCTTATCGGCACATG GAGCCACAACACAGTCTGTGCTTGTTTCTCAATCATCTACCACCACCTCAAACCAAACCTCTTCCCTCTT GGCATCTCATAAACTGAGCAATGCTTCAAGTGCCACTGCACTATCACTTCATGGACTGGCAGGTCTAAAT GCTGCCCAAGGCACGGTTATCTCCCATATAGCAGCGGCCCAGGGATCTCAAAGCAGTGTAACTCAGATAC TTCCTAGTCAGCTCGTTAGAAGCTCTGTAGTGTCCAGTCAAGCAAGTCATGTTACACAAGTCCCTCCCGG GCATCAGGTTGTCGTTTCCACGACGACGGCGACGAGCGCTGGCAACCACGTATCGACAGGAGGGCTGTCG AGTCCAGGTAGAGTGAGTAACATGGGTAATGCTGCTGAAGTGGATGGAATCAACCTGGAAGAAATCAAGG AGTTTGCCAAGGCTTTCAAAATTCGAAGATTATCTCTTGGTTTAACGCAAACACAGGTTGGACAAGCCCT TAGCCAGTCAGAAGGACCAGCTTACAGTCAGTCAGCTATTTGTAGATTTGAAAAGCTTGATATCACACCA AAGAGCGCTCAGAAGATAAAACCAGTTTTAGAGAGGTGGATGGCCGAAGCTGAGGAGAGGCACAAAAACG GTCTGAATCAACTCACAGACTTCATTGGTAGCGAACCCGTTAAAAAGCGCAAAAGACGGACATCCTTCAC GCCTCAGGCTCTGGAATACCTCAGTAGGCACTTCGAGAAGAACACGCATCCAACCGGCGCTGAAATGACA GCCCTCGCCCAGGAGCTTAACTACGATAGGGAGGTCATCAGGGTGTGGTTCTGCAACAAACGACAAGCTC TGAAAAACACAATCAAGAAACTGAAAGCTGCCGAGGCTACCATGAATAATAACTCTGAGGAGGTGGAGAG GTCGACGGTTGTTGTAGAGAGTCCCGAGCATGTGTAATGACCCTCTGAAAAGGAAAATACAGGGAAGACA ATCATGGTATTCTTGAGACTCTGGGAGATAATTCAGATTGGATGATGTTGAACAGACGCAGAAACATATG AATGGGGCAATGATGAACCCAAGTATGAAGAGTCATGAAGCTGGATGGAATGCGACCAAAGAAAAACTGA AAATAGAGCTGTGCTCATATACGAACCTGAGACCAGATTGACAACTGGTTCTAGATGAATGACTTCTCAC ATTATATTTTATTTTATTTCCTCACTTTCTACATTCTTTTTATTTTTTTAAACTGTGGATCAAGAGTAAA TCTATTCAGAAATCATCTGGATAAAATGATAGCTGGTGATAATCAAGTACTTGAGTCCTATATTGTGGAA TTCTTCTTTATTTCCAGCTTTAATTACTGCTGTCATTGTTTGCAGTCAATTGCTGACATGAAATTTGGAA TCATGACTTATGAAATACAATGTAAATTGACTTCATCAGTATCAAAATTGCTGTCACAACTAATTTAGGG CCTTCCTTTTGAATGTATGAATTCATCAAATATTTTTTTTTTGTTCAAGAAGGACCAAAAAGTGTATGAT GCGAAATTTCAGGTTTGTGTGGACGTCATATTACTCAGATGGAGACTGAACGATGCATCGAGAGATAATA AAATGAGATTGTTTTTAAGATTGTTACGATATGCTGCTTGTATGACAGCGATTGCTATCGAATGCTGGTT AATAATTGTCTTTTTTTTTGTACATCCACCGTAGGACCAATGTTTCACACTGGAGTAGTGAAACCTTGTA ACTTTTTATTTTTTAAATATATATGGTTCTAATGTGAGTGCTTAGTTTTTGTAATATTTTCCACTGGCTT GGAAAGGTGTAGATGAGCAATGTTTGCTTCAACATGTATAGATGTGGTGCTTTGAATGAGAAAAAAATAA TGTAAAATATAACTGGCTTATTTATTGTCCTTTTTAAAAAAAAAGAAGAAAATAGTGAACAAAATTGCGT TGATAAACCAACTCTTTATGCTACTGCTGTTTGTACCCTGTAGAAAAGATTCTATTTGTTCGTAATTTGT GCAATGGGCGTTATTTAGCCAAGCTTTTTCCTTGAAACATATTTTGGACGTGAAAATCTGAAACTTATAA TTCTGTTTCTGAAATAGGGCAGAGAAGGATCATCAATGTGGGTACATTGTAGTTATTTTTGAAGATCTTA ATGTTATACAGCATCTTTATCTTCCATCTGTCCTCATCATAGTGATTTTGCCATCTAAGTATTAGCTCAC ATATTAACTTTTCTATGTGTTTTCGTAAGTTTGATTATGAGTATGTAGTCAAGAACACTACACAGGAAGC TGTAGCTGGGACTACATCAATGGGCATTTTACATGTGATAGGATAAATTATCATGGCATGAATACTGTTT GGCTGTTTGATCTCAAAAGAAGAGCTCTGTTTGGAGGGAAAGGCTTTACTATTGGAACTGAAATATGGTG ATTGTGAATCACTCAAATAATGTTTGTAATTGTGTTTTTTTTTCTCCAAATGTCATAAATGATTTGAATC AGTCCTATGTGATTGTGGTATGATGAACTCAAAATGTGCCACTTTCGTTTTATGTACTTAATACATTAGA ATGTTTACAGAATCTGTTCTTAATGCACTTGTGTGTTTTTGTACCCTTTTCCCCAGTTTTCCTTTCTTCA TTTAACTCCTGTAATACCTCGTATTTGTAGCCATTTTCCATCCTGTATTTCTCTTTGTAAGTTTATTCGA AGTGATTTGTACTTTGGTGTACCTAATTATCATATCGATTTCTACGTAATTTGAAAGAAAGAAAAAAATG GAGTTTGTCATTGACTATTTGTAATAAGTAAACTGTGATTAAGTAATAGTATTCATACATAAATTTATTT GTTCTTAAAGACTTAATACTGATCAATGTCAGTCTTCATATTACCATAATTTTCCCAAGTTTTCATCCTT GCACATTTGTTTAAAATTGTTTTCAATGTTTGTAGCTTGTTTTAGATGGATTTAGAACACATTTTAACAC AAATGATTATTTTGCCAGCCCTGGTTTTATGTTCAAAATGCCTTGATATGGGACTTGCTTTTTATTTGTA TATCATCCTGTACTTGTTTTATTAGATTTTGCAATATTTATTTTGCTTTGTATGTAGGATATTGATGTAT ATTATTTGCTTTACTTGAAACCATTCCTCTCTCACTTTTGCCATGAGGTTTATATTATTAGAATACAATT ATGATTTTTACTTGATGAAGAAAGAATCTTGTGCCCTTTAAAATCAGTCATTTTTTTTAAATCCTTGCCC TTTTTGCTGAATATATGCCAGTTTTAAAAGGATTGTTTGCGCATGTTTGAAGATTATACATGAGACCCAC ACATGACATAGGCCACTGCTGTTCATAACTGAATGTGAACAGAGGACATAAACACATATATGATTATTAT ACGTGAATGTGTACATGAGATACACAGGCCTATGATGTTTACACATGAATGTGTACATGGGACCCACACA CACACATATGATCATTATATGTAAATGTGTACATGAGACACACAGGCCCATGATGTTTATACCTGAATGT GTACATGGGACCCACACACACAAACATATGATTATTATATGTGAATGTGTACATGTACATGAGACACACG TACAGGCCTATAATGTTTATACTTGAATGTGTATCAGGGACTCACACTCACCCATATATGATAATCTTAT GTGAAATGTGTACATGAGATACACAGGTTTAGGATATTTATACATGAATGTGTACATGGGACCCACACAC ACACATATGATTATTATATGTGAATGTGTACATGAGATGCACAGGCATATGGTGTTCATACTTGAATGAG TACCTTTGACACATACACACATATGATTATTGTATATGAATGTGTACATGAGACACACAGGCCTATAATG TTTATACTTGAATGTGTATCAGGGACACACACTCACCCATATATGATTATCTTATGTGAAATGTGTACAT GAGATACGCAGGACTATAATGTTTATACTTGAATGTGTACATGGAATACATGTACATACACACATACATA TATGATTACTCTATGTGAGAGTGTGCATGAGACACACAGGGCTGTGGAGTTTATACTTGAATGTGTACAT GGGACACACACACACATATGATTATTAATATGTGAATGTAACCATGAGAAACACCTGTAGGCCTTGATGT TTAGACTTGAATGAGTACATGTGACCCACACACACATACAATTATCATATAAGAATGTGTACATGAGAAA CACAGGCTTATGACATTTATATTTGAATGAGAATATGGGACACAAACATATATGATTATTATATGTGAAT GTGTACATAGACACACACATACTATGATGATTATACTTTAATGCGTACATGAGACACAAATACATAGATC TCATTTTCCTTGAATTTGAACATGAAACACACACACACATATGATGAGCCTATGTGAATGTGTACACAAA ACATACACACACCCATAATGATTGTACAATATAAAAATTGAATATATTTTACACAAACTAAACTTTGCTT TGACTTTTGCAATAATTCCATTTGACACTTGAGACCATGCTGTATAAAATAAGATCATACAGGTAGCACT AAAGGCTTTAGGATGATATTAACCCATTGCAAACCAGAATTGGTGATCTATGTACAAAGCCAAGGGAATA ACAATTCAGCTTACAGTGGTTTTACCCAATGAGGGTAGTATATAACAGTCATATCTTGGAAAAGAAAGTT GACTTTATTATTATGTATGCGAGCAAATTCCTTACAAGTAATATCTTCTTTTGCGCTCATCCGTTGTATC CAAGGTTTGGTTGATTTCCATCAAAAATAATTTAATGCGGAAAGATTTTCAGCCTCTACAAAATTGTGGA CTTGGTGTGTTATTGCAGAAGTAATATCATTTCCATTCTCTCCTTTTTTCATGGTTGTAATGAGAATAAT AAATATCTAATCACAAAAAGTATGGGGTTTTGACAAGACCTACGCAATTGTATTTTCAGGCAACTGAAGA AGAATAATCATGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds