Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038189296.1 PREDICTED: Patiria miniata POU domain, class 6, transcription factor 1-like (LOC119719805), transcript variant X2, mRNA GTTCTACTTAAATATTTAGCGTATTGCTATAACGGTGGTGACGTGTTGGCCAGCCTGCATACGTAATACG GCATTAACATATCGCACAAGACAATCCAGGCATTGCTTGTAATCGTACACCGCGCTCCCATTTTCCAGCG ATTTTCCTCGCCAATTTGACCGGGAGTTTGGCCGCCGGAGTTGTCGTCGTTATTATCAACTGTCTGGCGA GATTCTCGGGACCGAATGGGGCCGGAATTAATGATCCAATAATGCAAAAGTCCCAGGTCGTTTGGGGATA AGACAATCAACAGATTGGAGAACACCTATCATTATTTCTCCCCGACGAACTTGCATCTCATTTTGGCCCA ACTTCAAGCCAGGGACTTTTCCGGATTGGTTGCCAAGGGGAGGAGCCTGAGCGCCCAGTGACCAATCCCA TCACTGGACCCGATGATCATGGATGGCGAATCGGCCAACCAGCACATTGTTGGCAATGGCAAACTGGACC CGGCTGTTACAATCTCCGGCGCCCTTCCCTCTGTGACTGTGGCTAATGTCATAACAGGCACACAGGATCC CATGGTCTCTGGCCAGATGACGCTGAAAGCCTCCAACATCAAGCCCCAGAGCGCGTCGGATCAGCTCCTG CTAGCCATGCAGAGCGCCACCGGAGGCCAGGCCGTCCGCAGCGGTATGGTCATCAGCCCCACCAAGCAAG CGTTCCATGCCTCCGGGTTGAAAGGACTTGGGACGACGATTCCCGCATCGTTAGGCAACTCCACCTCCAC CCAGCAACTCCTGCTGTCACCACCCATACAGACGCTGCAGTCACCGCAGCAAGTCTTAACTAACCAGTTG TCTGGAGCCCAACAGATCTTCACTATCCCGTCCAACAACGCTGCGGGCCAGCAGCAAGTCTTGACCCTAC CCATCACCAACGCGGCCGGCCAGCAGCAGATCCTGACCATCCCCGTCAGCCTGGCCCAGAGCTCCGGCGG CATCCAGTTCCTCATCCCCACCACGGGCGGCCAGCTGCTGGCCGCCAACATCGGCGGGGTCATGCCCACC ATGGCCTCCAACTCCACCACGGCGCCCAGCCAGACCAACGTCACGTCGGTTCTCTCTGGTCTGACGCAAA CCACTGCAGTCAACAAGCAGTACACCACCACGGCTGCAGCAGCAGCCAACGCCGCCATAGCAGCAGGAGC AACCACCACGGCAGCCACCACTCCGCTACCCTCCATGTCAGTCCTGGCCAGCCAGACGGGATTGGGCCAG CTGCCACTGCCACAGATGCTCATGAATGCCACAGGCTTGAATTCCTCAGCGCGAGCCCTAGCCGCAGCCG GCCTCGCCACAATGGTCAGTGCGCCGCCCCTGACCCAAGTCCAGCAACAGACCACGGCCCCGCCGGCGCT GATGACCACCACGCAACGAGTCGCCGCTCCGGCCGCAGCGGCTACCACAACGGCCGACCAGGTGCTGACC ACCCAACAAATCGCTGCCCACGGATTGACCGGCCAGCTGGCCTCCACGGGCCAGCTCCTTACCGGGCACG GTCTACCCAAACAACTCATCACCACGCAGAGTCCCGTAGTTGTCGGCCAGGCCGGTGCCCAGGCAGCCGG CGTCCAGCAGCTCATGGTGACCCAGGCCGTGGTGGGCGGCACGTTGGTCACCAGCCAGGCCGGCAGTCAG GGGACCGCCGCGCAGGTGAAAGCGCCCCCCTCGCCCACAAATAACACGGCCACGGTGGCGGGTAGCTCAT CAGGTAAAGTTAGCAGTCTGGGCAACACCACGGAGGTGGACGGCATCAATCTGGAGGAGATCAAAGAGTT TGCCAAGGCTTTCAAGATCCGGCGGTTATCGTTGGGGTTGACCCAGACCCAAGTGGGGCAAGCGCTCAGC GCCACCGAGGGGCCGGCCTACAGCCAGTCGGCTATCTGCAGGTTTGAGAAGTTGGACATCACCCCTAAGA GCGCCCAGAAGATCAAGCCAGTCCTGGAGCGGTGGATGCAGGAGGCGGAGGAGAGACACAAAAACGGCTT GAGCCAGCTCTCCGACTACATCGGCAGTAGTGAGCCAACCAAGAAGCGCAAGCGCCGGACCTCCTTCACC CCGCAGGCCCTGGAGTACCTGAGCGTACAGTTCGACAAGAACACCCACCCGTCGGGCGCTGAGATGACGG CGATGTCGGCAGAGATCAACTACGAACGGGAGGTCATCCGAGTCTGGTTCTGCAACAAGCGACAGGCGCT CAAGAACACCATCAAGAAACTGAAGGCCGTCAACGACGCCGGTAGCCCGCAGGAGACGGACACCAGTGAA CAAGTGGTCGTCAAGACGGAAGTTACGTATACCTAGGGTAGTATGGTAACCCCCCCCCCCAAACCATTTA AAAGATTGGTTATATCAACACCCATGTCGAGTTACATAGCGCTACTTCGCAGAAAATACCGCACTGACTG TTGCTATTCTGTGCATATTGCAGGGTCACTACAAATTCAATAAAATGTTGTTTTTTTAAAATTTATTTGA CATTATTAAAATTCTCTCAATAGCATTATCAAAAAAACTCACAAATCATGTGTCCTACAATTTTTAAAAG GAATTTTTTGTTTGAGACAAAAATATTATTTCTTTAATGCTCCAGAAAGCACAAGTGTTTCATTCTTCAT ATTTATTGAAAATTAAAAAGAAATTTGCCACTTAATATGAAAATATTAAGTCACACTTGCCAAAGTTGCC ATATTTATTGTAAAAAAAATTAGAAAACAACTCCAAGAATTAATTCATTTTGCACCTGATCTCGGTAGAA ACTGAAAACGCGCGTCACCAAACTTGTGAAATTTGTGCCGAATCTGGGTAGTTTTTGCTGCAGCCTTTTA TTCACCGTTTCCCTTGTAAATATAATTTTAATATTAAAAGCTGTTAAAAACTTTTTATGCCGTTTAAAGG AAAATCATGTCACTGAGTCGACTTAAGTTAAAACCACCCAACCTACACCGTGTTGTATTTATTGTGTCTC GAAAATGGGACGTTTTGAAACAGTATTATTAAAAAAACAAATTTACTGCATTTGCGCTATTTTCTTAAAC CTCCCTTTGGAATTATATTCCTGTGTAGATATTTTACATTGCGCCTTTCAAAAATATTTATGTTGTTTAT TTATTGCAAAACGTCCCTCTAAACTTTCCTCGTAAGTATTTAACGGTTTGCTGAAAGCGAGCAACTCCCG AAGTGTTTTGACTTTTAAGAAAGTATCCACTTACTGTAAAGAATTTATATTTATAACGAACGTGTATTTT TAAGCGAAATGTATTTATTACCGACCTTATATTATTTAAAATACCAGGGTCAATATAAGTGGTTAATGGT GAACCCTTCAGAAATATTCTAAATCCTCCTTCCATAAATTATTTACCTATAAAATTCAGCATATTTTCAG TTCGACATTCAACATTTACCCAAGTTCAAATTTGGCCTTACAAAAAAAAACCAAAATAGTTTCCCATTTT TTTCTTCCTTTTTCTTACAAACAATTCGAAAACGACTTTTAACTCTAAGACATTATTGAGATTTTCACGA ACAACTCATTTTCCCCAATTTTTTTTGTTATTTCAGATCTGTTGCTAGGGTGATGAGAGTTTCTCTTGTA AATATGACCAAAATTTTGTATCTTCATTTTTCATTCTTATTATAGTTTATCCAGTCTTTTTCTTTGGTCC AGACTTTACACCCTTTTACAGTGTTCAAAATATTGAAATCCTAGAAATAACTTGCGAAGCATTATTACTT TCGTCGATCTACGTTCGTTTATTATGCTTTTTACATAAACTTTCCGTTTTTAAAACTCAAAAAGGTATCC ATAAAATTGATGTTATATAAACCATGTGTAATGTATTGCAGGTCAAAAACCTGTGTACATGTACACGTAG TTATGGTTGTCGTATATATATATATACGTTTCCATAGAAATATGTAAATAGTTAACTGCGTATATTTATG ACAATCAATTGACTTTTCCTTTTGTTTTTGTAATGAACATGTACATGTATGTCACAATGTTTTGTGAAGT CTATTAGACTAGTGTGAATTGTCTTAGTCTTTGATCTGAACATGAAAATATAACTGAAATGATGTCACAT AAGTGAACAGTGGTAGACTCTTCTGCACATTGTGAGTGGCATGAGGAAGTATGCAAAACTTCACTTGGCC CCGCCTTCAAGGCACTAGGTGAACTCTCATTGGTTGATAAAAAAAACACCCTGTCACTGCTGTATACTAA TGTATTCAGCTATTCATTGAGGGCGGGGCATAGTGGAACAGCGCTCATATAACTTGTTCTCTGATTGGTC AATTGAAAGTTTTGCATTTTAAGAATTAAATGCGCAGTTGAGTCAAGCCCAGTTCAGAAATTGGACACAA CGTTTTACAAAACAATCCCACTAAAGTATATTTTTTGGCAAACCGCATACTTCAAAACAAATAACGCTTC TGAAAACTCTCTAGTAGTGTGCTGTTTGAACTTCGACCTTTATCTTGTAAGATTTATCCTAATTGAGGAT ACCACTGCCCAACTTCTCAAGCCAGGTAAAAAGGAAGATTCATTGCCCAATTGATTAATAATGCCCAATT GTTTGTCAGTGTGCCCTTTGAACTTTGACCTTAGGGTATTGTTAACACGTAAGCCTCTACCCAACTGCAA AGTGTAGAGCTTCCTTCAATAGCTGATTTCTTGCCCAACTGATCACAAGTACCCAATTTGGAAAGTATGG ATCACTGTAGATTGCTGTCTCCCAGTTTCATGCAATTGGTTCGACTGCTTCATATTGCCCAATTGAAAAG CAAAGCCCATTTTGGGAAATATCGATCATTATAGTTCACTGCATCTCTCAATTCCATGAAATCTGTTCGT CGGTCCGTAGTGTGAGTTGTGTAGTTGTTTTTGTACAGTCGTTTTTTCAGTTTCCTAGATATTAAAACAA AAGTTGTCAAATTGAACATATGATTCTATATGTTTCAATGCGGGTTGGTGAAAATCCGACAATTGACAAC GTTTACTGCATTTGGTGCTTAGCCGTCGACGTCTTTACTACTAGAATCTGCTTGAGATTGTTAAGATAGA GAACAATTAGTAGAAAAAGACATTGTTTATAATGTTGTCATATTGTCTATTGTGTCAAAGTAAATGATTT TGTTTTCCGTGACATTGGATTCGAATTTGCACAAAGTGGTGCAATTCATTTTCAGGGTAAAAGCGTTAGT GATCATTTTTCGGGTTAAAGCATGTATTTCGGGGCTTTTAAAATGGTTCTTGACATTATAATCAAAGTAT TAATTTACCCAGTGACCATTTTCAATGAAGCATACTTTTTCAATTGAAGTTTTAAAACACGGATGATTTT CACGAAATTTCCAATTTGAAATGTGATTTTTGTACTGTGTGTATTGAAGAGATTGAAATCTTGTACAAAA TTCAAGCCATATTTTTTTAATGTGTTGTTTCGTTTCAAGTCAAAAGCCAAAAAAGTCCAAATTTGGTCGT TCAAATAAAATTATGTTTCGAGTGATCAATACCCAAAAACGTTGCTTTAATCTGAACTTGATGCTAAGAT GTACAGAACATTTTTTGCAATGAAAGTATGTTAATCTGATGAAAATGAAAAACTGACGATCTTCTTGAAA CATTTTCCTTAGAGAAAGGTTGTACTTAAAAAAGGAAATATTTTGTATAAACTGTCTCAGATGTTTTGTT GTGTCTCACAGTGTATTAAGGTTGTTAAAAGTGTATTGTCTTACAGCTTTTCAAGAGGGGCGGGGCTTTG GAAAAGGGGTGTGGTTTTGGAAAGGGTGTGGTTTTGGAAAGGGGTGGGGCTTTGGAAAAGGGGTGTGGTT TTGGAAAGTGGGGCTTTGAAAAAGGGGTTGTGGTTTGGAAAGGGGTTGTGGGTTGGAAAGGGATGGGGCT TGGAAAGGGGTGCTTTGAAAAGGTGTGGTTTGGAAAGGGGTGGGAATTTGAAAAGGGGTGTGGTTTGGAA AGGGGTGGGGCTTTTTTGGAAAGGGGTGGGGCTTTTATGGAGCGGAGAAAATGGGAAAAGCTCCGCCTTT CCTGTCCACAGCTGTTTCCTTAAATATCAACTTTTCCTCGGTAGATCTTCCAGGTTTAGATTTTAAAAAT ATCCGCGCCTGTTTTGTAGATATGAAGCAGTAGTTGTATTCGTAACGAATCTGATTAGAAATAATATTAA TCTTTTTTTTTTAATTTATGGTAACATGCGCCTGTAATATATGCGCACGATGTGCATGTGAATTGTATGC ACAAGTTTGTATAGTTCGGTAACTTTACAAAGACTTTTTTGTTTTGTTCTCATCTTATTAATTTTTCCTT CTTGTTAATTTGTCACCCACCAAGTTTTTTGCAAGTAACATATTCTGTATGTTTATATATTCAGATGAGA GTACTTTTATTCAACCTACTCCCCCCAGATACTTTATTTAAAAATAAGGAGTTAAAGGGAGATGTTAACT GCAGCATGTAATGAGCAAAACAAAATGAAATCTCCAAAAAAAAAAGAAATTTAGCCCGCTAAAAAAGCTT CACAATTGTTTTACTTTTATCCTTTCAAGACATCAAACACAAAAATAGTAGGTAAGAATTGGTAAATTTT GTCAGTATTTGGGTGAACAAAAAATGAAAACTGTTGCTGATTTTATAATTTTTGGGGTTGCTATTCAAGC CCCTGTCTGCGTTTTAAGTACACGTTATATTCGTGTTAAAGAAGATGCACATTTTAAAAATGAATGATGT AAAAAAAAAAATCTTGACTTTTTTTTTTTTTTTTTTACAATTGTGTATAAATGATATTTTAAAATCAATG CTAGAATTGGACCAATAGTGTAGGCCGTACTTGTACTGTTTCTTGTGACTGGAAAATTGTGATCGTGTTG TTGAATTTGTCCTTTTAAGAAAAAAAGCTAAAATGTTAAAAATATGTGTCACTGTCGTCATAGTAGAATC ATGCATTGTTGTACAAAAAAAATGGAACCTTTTAAATAAGGTGTGAGTTATACACTGTATTAATGATGTC ACATGGGTACATTTGAAGCGCCCTCTAGGTTTAAACACTGGCAGGCATTTTTGTACATTTGTGGATTTAT TTATTAATTCCCATAGCAAAAATGTTTCAGTTTTTGGGAAATCTAATGCAGCCGGGTTGAATAGACTTAA GATATTCATCAAATGGTCTCCAGTTCGAATCCTGTTTTGGTCACTTTTTTTTGCAAAGGTCATTTATGTC GATAGACTGAAGACTTGAACCTGTGTCTTCAGGAACTTAGTCCAATAACTCACCGTTAAACAACTTTGAA CTTTACATGAAAGTGCGACAGCTAACCTTATTTATTTATTTTTGTTCCAAAAATTACAAATATTTGGAGT GAATATGACATTAAAACACAGTAGCTATTTTCGTAACGTTAAGGAATTGTGTCAAGTGCAACTAAAGAAA AATTACCATTTTTTTTTTCTTTTTCCGTCAGTATTTTAGATTTGAAGACAGGGCCTTTCTAGTTTACATT AATGAAATACAAAATGTTAAGTTAGCAAAAACGTCAATCGCGAAATGCTATGAAGGGTTATGGGTGCATT TAAAATTTTGAGGAAAAGTAGGAATTTTGTCCAAGAAGTGATGTAAATGCCATCTGCCTTGCCAACTAAA ATAATTGAAAATAACCCCAGTGAAATGTATGTAAGCTGGGGCCTTTTTAAGTGCAAAAGTCTTAAGCAAC AATCAAAGATTATTGTTGTGTAACAGCTGTAAGAAGAAAAAGGGGGGCAAAATGGGGTATTAAAAGAGTA AATCATGACAAAACTAGATTGCGTTAAACTTTAATTGATCATTGTTCATTCTATAACAGTGTAAAAAAAC AAAATTGGAGCGCTTTTCCATACAAACTATTTGTGAGTTGTCTTGTGAATGTTAAAACTGTAATTTATCG TAAACGATGATTAGGTAATTATACAGCCACTGTAATGTAAATATTCAATGTGATAATTTTAATAAAATGT GCAAAAAATTGAAGAAAACAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds