Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038189297.1 PREDICTED: Patiria miniata POU domain, class 6, transcription factor 1-like (LOC119719805), transcript variant X3, mRNA TTAGTTCTACTTAAATATTTAGCGTATTGCTATAACGGTGGTGACGTGTTGGCCAGCCTGCATACGTAAT ACGGCATTAACATATCGCACAAGACAATCCAGGCATTGCTTGTAATCGTACACCGCGCTCCCATTTTCCA GCGATTTTCCTCGCCAATTTGACCGGGAGTTTGGCCGCCGGAGTTGTCGTCGTTATTATCAACTGTCTGG CGAGATTCTCGGGACCGAATGGGGCCGGAATTAATGATCCAATAATGCAAAAGTCCCAGGTCGTTTGGGG ATAAGACAATCAACAGATTGGAGAACACCTATCATTATTTCTCCCCGACGAACTTGCATCTCATTTTGGC CCAACTTCAAGCCAGGGACTTTTCCGGATTGGTTGCCAAGGGGAGGAGCCTGAGCGCCCAGTGACCAATC CCATCACTGGACCCGATGATCATGGATGGCGAATCGGCCAACCAGCACATTGTTGGCAATGGCAAACTGG ACCCGGCTGTTACAATCTCCGGCGCCCTTCCCTCTGTGACTGTGGCTAATGTCATAACAGGCACACAGGA TCCCATGGTCTCTGGCCAGATGACGCTGAAAGCCTCCAACATCAAGCCCCAGAGCGCGTCGGATCAGCTC CTGCTAGCCATGCAGAGCGCCACCGGAGGCCAGGCCGTCCGCAGCGGTATGGTCATCAGCCCCACCAAGC AAGCGTTCCATGCCTCCGGGTTGAAAGGACTTGGGACGACGATTCCCGCATCGTTAGGCAACTCCACCTC CACCCAGCAACTCCTGCTGTCACCACCCATACAGACGCTGCAGTCACCGCAGCAAGTCTTAACTAACCAG TTGTCTGGAGCCCAACAGATCTTCACTATCCCGTCCAACAACGCTGCGGGCCAGCAGCAAGTCTTGACCC TACCCATCACCAACGCGGCCGGCCAGCAGCAGATCCTGACCATCCCCGTCAGCCTGGCCCAGAGCTCCGG CGGCATCCAGTTCCTCATCCCCACCACGGGCGGCCAGCTGCTGGCCGCCAACATCGGCGGGGTCATGCCC ACCATGGCCTCCAACTCCACCACGGCGCCCAGCCAGACCAACGTCACGTCGGTTCTCTCTGGTCTGACGC AAACCACTGCAGTCAACAAGCAGTACACCACCACGGCTGCAGCAGCAGCCAACGCCGCCATAGCAGCAGG AGCAACCACCACGGCAGCCACCACTCCGCTACCCTCCATGTCAGTCCTGGCCAGCCAGACGGGATTGGGC CAGCTGCCACTGCCACAGATGCTCATGAATGCCACAGGCTTGAATTCCTCAGCGCGAGCCCTAGCCGCAG CCGGCCTCGCCACAATGGTCAGTGCGCCGCCCCTGACCCAAGTCCAGCAACAGACCACGGCCCCGCCGGC GCTGATGACCACCACGCAACGAGTCGCCGCTCCGGCCGCAGCGGCTACCACAACGGCCGACCAGGTGCTG ACCACCCAACAAATCGCTGCCCACGGATTGACCGGCCAGCTGGCCTCCACGGGCCAGCTCCTTACCGGGC ACGGTCTACCCAAACAACTCATCACCACGCAGAGTCCCGTAGTTGTCGGCCAGGCCGGTGCCCAGGCAGC CGGCGTCCAGCAGCTCATGGTGACCCAGGCCGTGGTGGGCGGCACGTTGGTCACCAGCCAGGCCGGCAGT CAGGGGACCGCCGCGCAGGTGAAAGCGCCCCCCTCGCCCACAAATAACACGGCCACGGTGGCGGGTAGCT CATCAGGTAAAGCAGTTAGCAGTCTGGGCAACACCACGGAGGTGGACGGCATCAATCTGGAGGAGATCAA AGAGTTTGCCAAGGCTTTCAAGATCCGGCGGTTATCGTTGGGGTTGACCCAGACCCAAGTGGGGCAAGCG CTCAGCGCCACCGAGGGGCCGGCCTACAGCCAGTCGGCTATCTGCAGGTTTGAGAAGTTGGACATCACCC CTAAGAGCGCCCAGAAGATCAAGCCAGTCCTGGAGCGGTGGATGCAGGAGGCGGAGGAGAGACACAAAAA CGGCTTGAGCCAGCTCTCCGACTACATCGGCAGTGAGCCAACCAAGAAGCGCAAGCGCCGGACCTCCTTC ACCCCGCAGGCCCTGGAGTACCTGAGCGTACAGTTCGACAAGAACACCCACCCGTCGGGCGCTGAGATGA CGGCGATGTCGGCAGAGATCAACTACGAACGGGAGGTCATCCGAGTCTGGTTCTGCAACAAGCGACAGGC GCTCAAGAACACCATCAAGAAACTGAAGGCCGTCAACGACGCCGGTAGCCCGCAGGAGACGGACACCAGT GAACAAGTGGTCGTCAAGACGGAAGTTACGTATACCTAGGGTAGTATGGTAACCCCCCCCCCCAAACCAT TTAAAAGATTGGTTATATCAACACCCATGTCGAGTTACATAGCGCTACTTCGCAGAAAATACCGCACTGA CTGTTGCTATTCTGTGCATATTGCAGGGTCACTACAAATTCAATAAAATGTTGTTTTTTTAAAATTTATT TGACATTATTAAAATTCTCTCAATAGCATTATCAAAAAAACTCACAAATCATGTGTCCTACAATTTTTAA AAGGAATTTTTTGTTTGAGACAAAAATATTATTTCTTTAATGCTCCAGAAAGCACAAGTGTTTCATTCTT CATATTTATTGAAAATTAAAAAGAAATTTGCCACTTAATATGAAAATATTAAGTCACACTTGCCAAAGTT GCCATATTTATTGTAAAAAAAATTAGAAAACAACTCCAAGAATTAATTCATTTTGCACCTGATCTCGGTA GAAACTGAAAACGCGCGTCACCAAACTTGTGAAATTTGTGCCGAATCTGGGTAGTTTTTGCTGCAGCCTT TTATTCACCGTTTCCCTTGTAAATATAATTTTAATATTAAAAGCTGTTAAAAACTTTTTATGCCGTTTAA AGGAAAATCATGTCACTGAGTCGACTTAAGTTAAAACCACCCAACCTACACCGTGTTGTATTTATTGTGT CTCGAAAATGGGACGTTTTGAAACAGTATTATTAAAAAAACAAATTTACTGCATTTGCGCTATTTTCTTA AACCTCCCTTTGGAATTATATTCCTGTGTAGATATTTTACATTGCGCCTTTCAAAAATATTTATGTTGTT TATTTATTGCAAAACGTCCCTCTAAACTTTCCTCGTAAGTATTTAACGGTTTGCTGAAAGCGAGCAACTC CCGAAGTGTTTTGACTTTTAAGAAAGTATCCACTTACTGTAAAGAATTTATATTTATAACGAACGTGTAT TTTTAAGCGAAATGTATTTATTACCGACCTTATATTATTTAAAATACCAGGGTCAATATAAGTGGTTAAT GGTGAACCCTTCAGAAATATTCTAAATCCTCCTTCCATAAATTATTTACCTATAAAATTCAGCATATTTT CAGTTCGACATTCAACATTTACCCAAGTTCAAATTTGGCCTTACAAAAAAAAACCAAAATAGTTTCCCAT TTTTTTCTTCCTTTTTCTTACAAACAATTCGAAAACGACTTTTAACTCTAAGACATTATTGAGATTTTCA CGAACAACTCATTTTCCCCAATTTTTTTTGTTATTTCAGATCTGTTGCTAGGGTGATGAGAGTTTCTCTT GTAAATATGACCAAAATTTTGTATCTTCATTTTTCATTCTTATTATAGTTTATCCAGTCTTTTTCTTTGG TCCAGACTTTACACCCTTTTACAGTGTTCAAAATATTGAAATCCTAGAAATAACTTGCGAAGCATTATTA CTTTCGTCGATCTACGTTCGTTTATTATGCTTTTTACATAAACTTTCCGTTTTTAAAACTCAAAAAGGTA TCCATAAAATTGATGTTATATAAACCATGTGTAATGTATTGCAGGTCAAAAACCTGTGTACATGTACACG TAGTTATGGTTGTCGTATATATATATATACGTTTCCATAGAAATATGTAAATAGTTAACTGCGTATATTT ATGACAATCAATTGACTTTTCCTTTTGTTTTTGTAATGAACATGTACATGTATGTCACAATGTTTTGTGA AGTCTATTAGACTAGTGTGAATTGTCTTAGTCTTTGATCTGAACATGAAAATATAACTGAAATGATGTCA CATAAGTGAACAGTGGTAGACTCTTCTGCACATTGTGAGTGGCATGAGGAAGTATGCAAAACTTCACTTG GCCCCGCCTTCAAGGCACTAGGTGAACTCTCATTGGTTGATAAAAAAAACACCCTGTCACTGCTGTATAC TAATGTATTCAGCTATTCATTGAGGGCGGGGCATAGTGGAACAGCGCTCATATAACTTGTTCTCTGATTG GTCAATTGAAAGTTTTGCATTTTAAGAATTAAATGCGCAGTTGAGTCAAGCCCAGTTCAGAAATTGGACA CAACGTTTTACAAAACAATCCCACTAAAGTATATTTTTTGGCAAACCGCATACTTCAAAACAAATAACGC TTCTGAAAACTCTCTAGTAGTGTGCTGTTTGAACTTCGACCTTTATCTTGTAAGATTTATCCTAATTGAG GATACCACTGCCCAACTTCTCAAGCCAGGTAAAAAGGAAGATTCATTGCCCAATTGATTAATAATGCCCA ATTGTTTGTCAGTGTGCCCTTTGAACTTTGACCTTAGGGTATTGTTAACACGTAAGCCTCTACCCAACTG CAAAGTGTAGAGCTTCCTTCAATAGCTGATTTCTTGCCCAACTGATCACAAGTACCCAATTTGGAAAGTA TGGATCACTGTAGATTGCTGTCTCCCAGTTTCATGCAATTGGTTCGACTGCTTCATATTGCCCAATTGAA AAGCAAAGCCCATTTTGGGAAATATCGATCATTATAGTTCACTGCATCTCTCAATTCCATGAAATCTGTT CGTCGGTCCGTAGTGTGAGTTGTGTAGTTGTTTTTGTACAGTCGTTTTTTCAGTTTCCTAGATATTAAAA CAAAAGTTGTCAAATTGAACATATGATTCTATATGTTTCAATGCGGGTTGGTGAAAATCCGACAATTGAC AACGTTTACTGCATTTGGTGCTTAGCCGTCGACGTCTTTACTACTAGAATCTGCTTGAGATTGTTAAGAT AGAGAACAATTAGTAGAAAAAGACATTGTTTATAATGTTGTCATATTGTCTATTGTGTCAAAGTAAATGA TTTTGTTTTCCGTGACATTGGATTCGAATTTGCACAAAGTGGTGCAATTCATTTTCAGGGTAAAAGCGTT AGTGATCATTTTTCGGGTTAAAGCATGTATTTCGGGGCTTTTAAAATGGTTCTTGACATTATAATCAAAG TATTAATTTACCCAGTGACCATTTTCAATGAAGCATACTTTTTCAATTGAAGTTTTAAAACACGGATGAT TTTCACGAAATTTCCAATTTGAAATGTGATTTTTGTACTGTGTGTATTGAAGAGATTGAAATCTTGTACA AAATTCAAGCCATATTTTTTTAATGTGTTGTTTCGTTTCAAGTCAAAAGCCAAAAAAGTCCAAATTTGGT CGTTCAAATAAAATTATGTTTCGAGTGATCAATACCCAAAAACGTTGCTTTAATCTGAACTTGATGCTAA GATGTACAGAACATTTTTTGCAATGAAAGTATGTTAATCTGATGAAAATGAAAAACTGACGATCTTCTTG AAACATTTTCCTTAGAGAAAGGTTGTACTTAAAAAAGGAAATATTTTGTATAAACTGTCTCAGATGTTTT GTTGTGTCTCACAGTGTATTAAGGTTGTTAAAAGTGTATTGTCTTACAGCTTTTCAAGAGGGGCGGGGCT TTGGAAAAGGGGTGTGGTTTTGGAAAGGGTGTGGTTTTGGAAAGGGGTGGGGCTTTGGAAAAGGGGTGTG GTTTTGGAAAGTGGGGCTTTGAAAAAGGGGTTGTGGTTTGGAAAGGGGTTGTGGGTTGGAAAGGGATGGG GCTTGGAAAGGGGTGCTTTGAAAAGGTGTGGTTTGGAAAGGGGTGGGAATTTGAAAAGGGGTGTGGTTTG GAAAGGGGTGGGGCTTTTTTGGAAAGGGGTGGGGCTTTTATGGAGCGGAGAAAATGGGAAAAGCTCCGCC TTTCCTGTCCACAGCTGTTTCCTTAAATATCAACTTTTCCTCGGTAGATCTTCCAGGTTTAGATTTTAAA AATATCCGCGCCTGTTTTGTAGATATGAAGCAGTAGTTGTATTCGTAACGAATCTGATTAGAAATAATAT TAATCTTTTTTTTTTAATTTATGGTAACATGCGCCTGTAATATATGCGCACGATGTGCATGTGAATTGTA TGCACAAGTTTGTATAGTTCGGTAACTTTACAAAGACTTTTTTGTTTTGTTCTCATCTTATTAATTTTTC CTTCTTGTTAATTTGTCACCCACCAAGTTTTTTGCAAGTAACATATTCTGTATGTTTATATATTCAGATG AGAGTACTTTTATTCAACCTACTCCCCCCAGATACTTTATTTAAAAATAAGGAGTTAAAGGGAGATGTTA ACTGCAGCATGTAATGAGCAAAACAAAATGAAATCTCCAAAAAAAAAAGAAATTTAGCCCGCTAAAAAAG CTTCACAATTGTTTTACTTTTATCCTTTCAAGACATCAAACACAAAAATAGTAGGTAAGAATTGGTAAAT TTTGTCAGTATTTGGGTGAACAAAAAATGAAAACTGTTGCTGATTTTATAATTTTTGGGGTTGCTATTCA AGCCCCTGTCTGCGTTTTAAGTACACGTTATATTCGTGTTAAAGAAGATGCACATTTTAAAAATGAATGA TGTAAAAAAAAAAATCTTGACTTTTTTTTTTTTTTTTTTACAATTGTGTATAAATGATATTTTAAAATCA ATGCTAGAATTGGACCAATAGTGTAGGCCGTACTTGTACTGTTTCTTGTGACTGGAAAATTGTGATCGTG TTGTTGAATTTGTCCTTTTAAGAAAAAAAGCTAAAATGTTAAAAATATGTGTCACTGTCGTCATAGTAGA ATCATGCATTGTTGTACAAAAAAAATGGAACCTTTTAAATAAGGTGTGAGTTATACACTGTATTAATGAT GTCACATGGGTACATTTGAAGCGCCCTCTAGGTTTAAACACTGGCAGGCATTTTTGTACATTTGTGGATT TATTTATTAATTCCCATAGCAAAAATGTTTCAGTTTTTGGGAAATCTAATGCAGCCGGGTTGAATAGACT TAAGATATTCATCAAATGGTCTCCAGTTCGAATCCTGTTTTGGTCACTTTTTTTTGCAAAGGTCATTTAT GTCGATAGACTGAAGACTTGAACCTGTGTCTTCAGGAACTTAGTCCAATAACTCACCGTTAAACAACTTT GAACTTTACATGAAAGTGCGACAGCTAACCTTATTTATTTATTTTTGTTCCAAAAATTACAAATATTTGG AGTGAATATGACATTAAAACACAGTAGCTATTTTCGTAACGTTAAGGAATTGTGTCAAGTGCAACTAAAG AAAAATTACCATTTTTTTTTTCTTTTTCCGTCAGTATTTTAGATTTGAAGACAGGGCCTTTCTAGTTTAC ATTAATGAAATACAAAATGTTAAGTTAGCAAAAACGTCAATCGCGAAATGCTATGAAGGGTTATGGGTGC ATTTAAAATTTTGAGGAAAAGTAGGAATTTTGTCCAAGAAGTGATGTAAATGCCATCTGCCTTGCCAACT AAAATAATTGAAAATAACCCCAGTGAAATGTATGTAAGCTGGGGCCTTTTTAAGTGCAAAAGTCTTAAGC AACAATCAAAGATTATTGTTGTGTAACAGCTGTAAGAAGAAAAAGGGGGGCAAAATGGGGTATTAAAAGA GTAAATCATGACAAAACTAGATTGCGTTAAACTTTAATTGATCATTGTTCATTCTATAACAGTGTAAAAA AACAAAATTGGAGCGCTTTTCCATACAAACTATTTGTGAGTTGTCTTGTGAATGTTAAAACTGTAATTTA TCGTAAACGATGATTAGGTAATTATACAGCCACTGTAATGTAAATATTCAATGTGATAATTTTAATAAAA TGTGCAAAAAATTGAAGAAAACAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds