Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041621645.1 PREDICTED: Lytechinus variegatus condensin complex subunit 2-like (LOC121425561), transcript variant X1, mRNA TACTCAAATATCTTCAGCGCCATTTTCAATATTCGCAAAATTTGTTTGTAAACAAGCCGCAAGTATTTGT CCTTATATAGGCCTAAGTCTATTGAATACATTTTCTTAAGAAATGTCGAGTACACCTCAAGTGGAGGTTC GGACTCCGGTTAGCCGACTGGCATCCACAGCCGGACTGTCATCAGACTACATCTCCCCCACCACCCGGCG GAGACCCATCCCCCTGACCAGCCAGTCTTCTATCCTCTCCAACTTTGCGGAGAATGATGACGCTGCAGAA AAGAGGCAACGGAGGCACTCCCGTGTCATGGAGATGCAACGTCACCTCCAGAGTCCCGTCTCCTCCCCAT CGGACAGCCCAACTGAAAGAAAGAGGAGATCTCTACCCCTTAGTGGCTTATCAACCGGTCAGCTGACTGA TCATTATTCAAACTGTATCAAGCTCTCTGCAGAAAATAAAATCAATTCCAAAAATGCTTTTGGGCTCCAC CTGATTGACTACATGGCAGAGCTTCTGAAATCAAAGAAAGGAGAGATGACAAACTTTCAGGTTGCGAGTT GCACCCTCGATGCCAGCGCTAAGATCTATGCAGGCAGAGTGGATGCTATTCACGCTGAGACATACAAGAT GCTGGGAGGACTCGGACATGACAGGCAGAACAAACAATCAGAAGGAGACGCAGAAGGAGAAGGACCGGAT GCTAATGACGGGAAAAAGAAGAAAAGAGCCCGTCATTCTAACACAGTGGAGACCAACCTGAAGAACATCA ATGTGACTAAACTGGACCTTGGATTTGAGCCCGACCCACTTTTCCAGCGAACCTCGGCAGCTTTCGACGA GGGCGGGTCCTTCGGTCTCCTCCTCAACCACCTCCAATGCCGAGACGACGGCTGTGAGCTGCTCCTCGAT TCTAATACGATCATCAATAACGAGGAGGAACCATCAAAATCAGAGAAAGGCATACAGACCATGGTTGACA TGAGTGAAATAACAGAAATCTACAATGGAGTGAGTTTAGAGAGCCTGCAGATTTGTCCGGAGTTTGCTGA TTTCAAGTTCACAAACTGGAATGCAGATGGAGAGGAGGGTGTCACTTCCATGATCAGCAAGATGGCCGCA GACAGCAAACAAGCCTTCGACGTCCACGCAATCCCCGAACCTCTGGAAGAAGAGCCCGCAGATCACATGG GTATGGGAGCAGACCATTTTGAAGGAGGGGGCTTTAGTGATGATGATGATGACGGAGGGGAGCGGTTAGA CCAGCCCTCGATGTTTCACTCGGATAATTCCGATGCCACCATCATGATAGGTCGTTCAGCGTCAAGTTCT GTATCAGTCAACACTGGAGGGAAACTCTGCTTACAGCTTTCACTGGAACCCTCCGAGTATTCATACTTCA ACCTGGATGTCCTCAATACGTGGGCAGGTCCGCAGCACTGGAAACTCAAACCTAAATCTAAAGATCCTGC TACATCCGAGGAAGGCACCAAGAAGGCAGCCTCGAAGAAGCCTGTATTCAGATTGAATTACGATGAAGAT ATTGACTTTGATAAATTCTTTGGCGAAAGCAAGGCTTCCACCACACTCTCTCAGGCTACTCTGAATAAAT ATAATAAGAGTGAGCTCACTCTTCCTGATCAAGATGACGATTACAAACCAACGAGTCTCCTGAAGATGTT CCTCAGGCCAAACTTCATGATGAAACGTCAGACTACAAACAGCAGCAATGACTCTCTTGATGATGGTATC GATGGCTATGATTACAACAACGAGAATGACTGCGCCAACTTTTGTCCAGCTGCTGGGGGTGGTGATGATG ATGACGACGACGACAGCAGCCACGCCCCTGGGAGCATGACCTATGACCTGAGCTCCATGGGGGGTTGTGA CATGAGTCAGGGATCAGCTGGTAGCCATAGCGGTTTCTTCAATAACAGTGTCTTTGATGCCACGATGCTT CAGGGAGACAAGCTGGTTGCACAACCCCACAAGGTTAACAAGATTGACATACAATACGCCCGCACAGCTA AGAGGATGGATGTTAAAAAGCTTAAGACGCACATGTGGGGCTTCTTGACGAAGCCAGAATCAGACAAGGA GAATGTCTGCAATGAGGCCGATGCGGACAGTGTTGCTGGAACCCAATCGTTTTGTGACATGTATACTACC CTCCCTGACAAGCTTAGCAAAACAATGTCGAAGAACCTCAGTATTCCCATTGCGTTTGTGTGTCTTCTTC ATCTCTGCAATGAAAAGAGTCTGAGATTGTCTGTCCAGGCCGATAGCTTTGAGGATCTTCTTATCACTCA GGATTAAAAGCCAGCCACGTCAGCCTTTCAACAGTATTTCAGATCCAGTCAAATGAAATAGACCAGGGAG TGTTTCACATAGATTTAAAAGCTTCACAACCAACAAGATATTATGACTTGACCAGTTTTTTAAAAGGAGA GTGAAACACGTAACCTTATATAGCCCAGGATATTTTGAAATTGCATAGCCCGGGGGTGGGGGGCAAAAAC AGCCCCCCCCCCAGATATTGGCTTTGATCGTGGAATCGCAACGAAAATTGGCACGCACGTCACCCATGAT GTAATCTCTGCCATTTGATTGTCAATTGTACCAAAATTATTCAAAGTTATTTTTGATTAATTGATTATGC CAATTAAAGCAAAAAGTCATAATTTGTTTGTTAATCTTTAAATATTCCTTCCATCCGCTAGAATTTAGTC TGAACACTTTTTAGGATTATTATCAAATGTATATTAGAAAATGGCAATATAAAAAAAAAATTTCTGTGTG TTTTAGACTTTATGTTTTTCATTGTTTTTGCAGTGGAAATCGGCAACTTTATTTCAGTCATAAATAACAT GAAATCTTTTGCTTTTAATCAGTAAAAGTAAAAAAAATGATGCTTTTATAAATTTTTTACATACAGAATT TGAACTGGATTTGTACATGAATTACGTTTTTGAGCAATTTGGGTCTGACGTGCACTTACAAAACAAAAGA AAATAGTCATGAAATGTCATGGCGCGATCTTTTTGCATTACAAATTTGTTTTGATAAATATAAAGGGGGC TGTTTTTGCCCTCCCCCTGGCTGGATAGGGTTAAAGCTAGTGAATTGTACAAAAACTAAAAAAGAAACAG ATCTTTTAAAAGCTGAGATTTTGTAGATGATGTCAGGGACAACGTGCGTGACAATATTCAGCACAATCGA CAGCTGAGATCATGAGGGAGGAGGGCTTTATAAACTGGAAATAGCCGAGACTAGTTAGGGTTAATCTTCC CATCCAAAGATGCATCTGCAGAGGAATCGTCTAATGGGGCATTACAAGAAAACTGATCAATTCGTTCAAT TAATCGGTTGCAGCGAACAGGCCGAATTTCTAACTTTGAGGTCGACATCGCACACAGTCGTAGTACTCTA ATGAGACTGTGATGCTTCAAAAATGAAGACCACATGTCGTGAATGCACTGTTAACGGACTAAATAATGCA ACGAAATATGCGGAAAAACTTCTCTCCCACCTGCATTGAACATCATATCTGGGGAGCGTTTAATGAAAGG ACTTGTTGGATGTTTTATCCAACAAGTCCTGTTTTATCAAACAGTTACTATAGTAACAGTGCTTCTCAAC CAATCAGAACCCAGGAAAGTTGTCAGATCTGACAAATTGTCGGACGAAAATATTGATGAAACGCCCCCCT GGTCGAGCCATGTCGGCCAGCGCTGAATAATCGCATGCATGGAAGTACTAGCATGCTCAAAAGATGTCAA CATTCTCCCATGATGCATTGCCAATTTAGCCTGTCCATTGCAACCGATAGATTGCGCACCGTATTGTGAA TCCACCGAAGGTTTAGTTTGGGTCTCAAAATCAATCAAATGCCTGCAATTAGTTGCAAATTCGCACTTTG ATTCCTGGGCCCTGTAGCACAAAGCTTAGCAATGATCTTAGAACATTTTTCTTTGATTGATTCCATTAAC TACAATGTACAATCAATCTTAAAAATCAAGTGTATGGATCAATTGCTAACCTTTGTGTTACAGGACCCTG ATCTGCTTCTTGCAACAAGAAATTCAATTAAATTCCCATAGCTAAAATTGATCTACATGTATCAATTGTA AAATAATTCAACAGAATGTTTGCAAATGATTGCAAAATATTCCATTGCTACTCCCCTTTCACTGTAATTA TTCTGCCCAGACAGCTATCCTTGTATATAGACTAAATTCTAAAAATTCAATTTCCCTTCCTTTATGGCCT TTCATCAATCTGGGCCCTGTCTTACAAAGAGTTGTGATTGATCCGATCAATCGCAAGTATGGAAAGCAAG CCAAGTCAACATATAAAATGCATGTTTCTTAAAAAAAGATAGGAATGTACATCCATAAATTCATCAATTT CTTGACAATTTGGTGTGTTCTCCTTTGTTTACAAAGGCCATTTTGCAAATTTCCTATAGAAAAAGTTATG ACACTGATGGATTTCCATAGAGTTGAGATTTATTGGATCAGTCGCAATTCTCTCTTAGACTCTTGGTGAG TGTTTAATGAAGCTTTGCATAAGTTAGGAGTAACTTTATGAACAACTGGTGACCATTTTCTTGTTGTAAA TGGCATACACCAAATTTTTGCAAGTGTTGATATAGTTCATAAGAAAGGGTCACCAGTTCTACAGTCTTTA TGAAGCACCCACGGGGGGGGGGGGGAGTTTCGAAAAGATATAAGTATGTCTTAGAATCGCACTGAAACGC CGACGCATACATGATATGCATGTCATGTCTTTTCTACTGCATGCAACTAGACATTTAAGGGCGACTCTAG GTCATACTTAAATCTTTTTTAACACCCCCCTTCCCAGATCTTGTAAGTTTTCGGAAACTGTTATTACTTA CAATGGATTAGCCCTATCCATCTTGCCGATGTGCAGGTCAAAATTCAAAAATAGATTGGAAATACATTGG AATGCCAGTCAATATCTAAAATATGTATATTGTAAAAATCCATTTATTTAACAGTATTTGAGAGAAATTG ACTTATTTCCATACTTATTGTTTTATATATTTTTACTTATGGTGTATATAAGCTAGAATATTGTGCCTTG TCATTTTTATATTGTAAATTATGTATTGCTTACCAGTAATGTGGCTCTAGATGGCTCTTTCATGAAAATT AGGGGGGGGGGTCCTAGCAATAAACAAATCTTCAGGGTCATCAAATTTAGATTTTAAAAAATATATATAA AGGGGGCGGGAGATGGATCGGGAACTTGATTTAATATGAATGAATATATCCAATCGCAAACAGTCTCAAA TTCCGGACTGTATTTTAAGAAATATCTTGTTTAAAAGTACTTCCAAACTTTTGTTCTCTAACCAAGATTT TTACACCCTAATAAAGTTAAAAACAAAAACAATTTGATAAACAAGCTCGGGTATCACATGATTTGTTGGT AAATGTAAATTATTTCACATCAGTGCTAATTTTGCCATTTCAGTGACAAATTCTTTGCCTGTTAATGCCA TGATTTATGAACAATCCTTAAGAAAAACAACTGAGTAACAATATTCAGTAAACCTCAATTTGATTTTTTT TTGGGGGAGGCAAAAGACAAATTAGAGAACTTGGTGTACACCACTGTATAATGAAAGTTATAAGTACTTT GTAAAGATAAGAATTATGTTTTTCAGGAATTTAGAATTTTGATTTTCAGCCCAATTTTCATGCTACATGT GGATATGGAATACATAGAATTGTACTGACCTCTGATTCTCTATATGAAATAAAATGTAAATAATATAGCA TCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds