Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030981188.1 PREDICTED: Strongylocentrotus purpuratus DNA repair protein RAD50-like (LOC105445688), transcript variant X1, mRNA CTATCCAAAGAATTAGATGACCAGAAGGCAAGATTGGAAGCAGACGAAAGATCAGTCACAAAAATCAATG GTCAGCTAAAACCAGTGGAGCTAAATACGAAGGAGAGAAGGACCAGCTGATAAAGGGCATGAAGAGTGTG GAAGACCAGCTTGAAAACATCTTCCCAGGATCAGTTGATGAATTAAGAAAGATCTACAGCACTCATCAGA GTAAGATTACTGAGAAAGAACATCAACTTCAAGAGAATGAGGGTAAGAGGAGGATACTTCAGGAGTCAGC GCAGAGCACAACAAGTGAGAAAACCGAGCTACTCGTCATACAAGGAGTCCTTCAACAAGCAGCTCGGGAA CAACAAGAGACGATCCGTCAACGAGACCGTAGAATGCGTGGCCTAGCGAACCAGCTTCATCTCCTTGGTT ACAGTAAGACTGGAGAGTTTACCTCCAGCAGGGCGGGTGATTTCATGGAGAAGTCAAAGGAATGGATGGA GGCTCAGAGAGGGGAAGCAGAGAGGATCAAGAAGCAGCATGAAGATAGAGAGAAGGGGGTTGATAAACAG TCACAGGATCTCAGAGCTACCTACACAGGTCTAGAGACAACCATTAAGATGAAGACGGCTACCATTAATG ATAATTCTTCTAAGCTCCAAGAGATCAAGGGAGAGCTAAGCACGATGGGAGAGAGTTCACAGAGACTCAA GGAGCTTGAGAAGGAGAAGAAAGGAGCTGAGAGTGAGCTTAATCAGTTAGAGGGCAGTCTCAATGTTGAT GACGTCAAACAAGAGATTGATTCTTTACAGAGAGAAGCAAAGCAGTATGATAAGAGGATGTCTGATCTCA CGAATGAGTTGACAACCATCTCATCTCAGTCACAAGCGAGAGCTAAACTTGAGATGATGCAGAAAGAGAA GAATACCAAAGAAAATGAGACAAGAAACCTGAGAGGAAAGCGCGAGGAAGAAATGTTGCATCTTCTTCAA GTTGATCACTTTCCTACAGAGAACATTGGAACCAAGCTCTCCAAATACATTGATGAGAAGACAGAAGAGG TGAAGAGATGTAATAATAAACTTAATCATGCTGGGAGGGATCTCTCAGCTAAGCAGGCCAACAAGAAAAC AATCATGGACCAATTGAAGAAGAAAGAAGATGAACTGAGAAGCAACACAGATCAGCTGATGTCAGCTTGT GGAAGTGAAGATATCGATGAATCTATTAAAAAAATCACTCAATCTATCAACAGTCTTCAGAATGAGCATG GTGCATTGACAGGTAGCAAGCATCTGTTTGATCGATACATCCAATCTTTGCAACGAACTGATGCACTCTG TCCTCTCTGTCACCGTGGCTTTGATTCAGGAGTAGAGGTCCAGGAACTCGTTCAAGAGCTGCAAGATGAA CTTCGCCTGGCTCCAAGCAAGCTAGTAGAAAAGGAACGTTCCATTACGCAGCAGAAGGAACAATCTGATC GTCTGTGGGTACTCAGACCAATTAAGGATGCTGTGAAGAAGTTGTCAGAGCGAGAGATCCCAGACCTCAA GCTGGAGCTATCTGCTGTCAATGCTGATATTGAAAAGCTCAATGCAACCATTAGTAAGGCTGAAGATAAC GTCAGTATGTTGCAGGTGGATGAAGCGATGGCGAGGGATATGAAACCTGATATCCAGATACTGGAGAAGA CCCTCACAGACCTCCGAGACCTAGATCACAAGATTGGAGAACAGGCCAAGTACTTCTCAGGATCTGATAT AAGCAGAACTCTTCAACAAGTCAACACTGAGACAGAAGAAGTCAAGATCAAATTGAATACAGTGAGGAGT ACCCTAGATTTCAAGCAACGTCAGAGACAGGAACATGTTGATAATGTAAACAAGATGAGAATCAGCATCA ATAGCATCACCAGTGAGACACTTCATCTATCTGCTAAGCTTCAGAAGAGAGAGAGACTAGAGAGTGAGCA AGCAGAACTGAGTACAAACAGCAGAACGTTCCAAAGAGAAATAGAGAATTCCAGACAAGAACAGAAACCG ATCAAGGACAAGCTTCAGAAGCTAGATCAAGATAAAGCAGCTATCATTCAGAAGAAAGAGAGGGAAATCA AAGCAATCAGAGAGAAGATTGATGAGGTCCAGCAGCAGCTGAGAGATATCCGTGCAGGGACTTCACACAT TGCAAAGTATGTGACGGATGGGAAGGAGTCTAAATTGGATGATGTAGAAAAGAAGATTATTGTCCTTAAT GAGAAGTTGACTAAATTGGGTGAGGATCTAAGTCCAATCGAAGCTACCATTAAACAACTCACAGATGAAA TCAGTAATCAGAAGGTGAAAGAGATGGAGTTACGGAATAACATGCTCCTCTTCAAGTACCGTCAAGATGT TGAGAAGAAGAGCGGTGAGATAGAGAAGCTTCAGGAGCAACTAGGTGGTTATAATCCCATCACAATTGAG AGAGAGAAGACAGAAATGGAGGGAAAGAAAGCTGGTCTTAATAAAGAGAAAAATCAGCTTGATGGGAGAT CTACCGAGTTGAGGGAGGCGGTCACTAAACAAGAGAAGGAGCTAGAGAGTGACAAGTACAAGAATGCTGA GAAGAACTACAATGATATGATGATTAAATGTAGGACAACAGAGGTTGCCAACGAGGATTTGGACAAATAC TACAATGCTCTAAATAGTGCTATCAACACTTATCACATACAGAAGATGTTAAAGATCAACAAGATTTTAC AAGATCTCTGGCGCAACACATACAAGGGAAGCGATATTGACTATATTGAGATACGCGCTGATGATGAGAC GGGAGCATCTACCACTCAAAGGAGGCAGTACAATTACAGGGTTGTCATGATGAAAGGAGACGAAATTCTG GATATGAGAGGAAGATGCAGTGCAGGTCAAAAGGTGCTCGCTTCTCTCTTGATACGGCTTGCCCTAGCAG AGACGTTCTGTTTGAGTTGTGGAATCTTGGCGCTAGATGACCCCACTGCAAACCTTGATAGAGACAACGT TGAGAGCTTGGCACATGCACTTGTAGACATCTTAAAGAGTCAAGAGAACCAAAGGAACTTCCAGCTGCTG ATCATCACTCACGATGAAGAGTTTGTTGAACTGCTTGGTCACTCGGACTATACCGATAACTACTATCGAG TCACCAATAATGCAGATTACAGGTCCACTATTGTGAAGTATGACATCGCCACTCTACAACCAACAGAGCC GGTTTAGCTACTTGACCCAACAATATATTGAAAATCAAGTTTGATTTTCTGCTTGCAAGTAAATACTTCT ATATAGTGTGGCTTCCTGTGATATTGAAAGAATGAACCTTGATACAGATTAGTAAATGATATAGTCCAAT ACCAGAAAAATGAAAATGTATGATGTAAAAAGAAAAAAAAGATGCAGAAACCAATAAACCAACCAATAAA TAAATAAGAACAAAGAATTTCTGGTTTTAGACTGAATAAAATAACTTTCCATTGTAACATCCTTTTTGAA TGCAAAATCTAAGTAGATTATAAGATAAGATCTCTTCATTAGGCTGTAAGAGCATTTGTGGGAAGTTTCA TGCAAATTATTGGTAGTGGGGTATACAGCATCTAGAAAACGGTTGATTTAGATCATTCTGGGCTCTATAA GGGGTAAGAAAGAAATACCTTTTCAAGATAACTTGGAAGAAGCTTTGTTGAATGTCAAGTAGTGCGCTTA GTGTGATAGACTTATGCTCCTCGAAGGGGCTGTGAGGTTTGTGAAAATGTCGAAGAAACAGTAATAAATA TAATGAGCATGACTAAAGCGAATGGAACTCTGTACGGAAAAAAATTTCATTCAGCTCTCACCCTACTAGG TACGGTAAGCATGTTATGACGACCTTATGTGGAAGAGATACAGCCAAACTGCTTCTACATGTATGTTCTG AAATATGCACTAATTTATGGTTCATGAGAAATGAGGCCAAATTAGTGAAACAATATTCTTCCATTAGAAA TGGTATTTTCATGTATTATGTATCTTTTGATCATCTAGAAATAGAGTGAGGAGACTGTACCTGATAGTCT TCTACCATTGGATGGTAATCTTTGATTAATCCCTCTTAGAGGTCCTGTACCTGTCTTACAAACAGATGTG GTTGATAGAAATTGATAGTAACTCGATATTAAGCGCACTTATGTGCTAAAGGGATTAGATATTTTGTAAT TTTGTTTATTGCTTGTAGGACTTGCAGTCAATCCAGATCAAACACAACTCGTTCTATGATGAGGTCTAGA TTTTCCTTTTTACCTGGCTATTGATATTGAGGGATAAACCACATTTATCTTTCATGTTAGACATGTCATT CAAAGCAACCCATTTTAGAGTCAGTACACTATAATATGTATCACTGTTTTCCTAAATCTCTTTTTTGCCT GATATTACAAGTAGCATTTTAGTGATGAATTTTTAAGTAACTCAATATATTTTTGTCAATTTTTATGTGT TTATTTATTTTTTACTTTGTTTTATAGTAAGATGAAGATTAAGTACAGTATGAGATTTAGCTAATGTGCC GATTCATGTGCCAGCTTTCATTTTGCAGACTCCTTTGTATTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
