Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041610762.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121417171 (LOC121417171), transcript variant X1, mRNA GAATGACCACTATTGTCAATAACATGGCGGAAGCTGCGACGGCGTCCAAAATGATATTTTTTCCTCTCTA ATTTCTGCTGTTAGACCACCAAAAATAGGAAATATATTTGGAATTTATCATCGACACAAGGAGCCATGAG CGATAGGGTAGAATGGGTGGAGATAATAGAACCCAAAACACAGCGGCCCATGTACGGCAATCTCAGGACG GGAGAGCTGGCATGGGAACCACCCTCAAGCGCAAAAGTGAAAAAGAGAGATAACAACCAGTGGTGGGAAC TGTTTGATCCCAAGACTTCCCGCTTCTATTACTACAATGAAATGCTACAGAAAACGGTCTGGCATAGGCC AACCAACTGTGACATCATACCACTCGCTAAACTACAGACTCTGAAGTTAAATACAGAAGCCAGACAGGAT GATGGAGATGTTCATAAACACAAACAACAACATTCACAGCGTCATCGCCATCGACACCGTGAGGACAATC GCCACGCCCGCCACCACCACCATCACCACCATCATCAGCAAGGTCAACGGGGTCATCTCCATGACAACGA GAGGATGGACGGTGATGGACAAGCTGAAATGGTCGGACAACCGGTAAGACAACGCAGGGCTTCTGACCAA GTAGAAAGATCCAGATTCAACGAACTTGCCACGGCCCACAGCATGGGCTACCACCATCAAGGGGTCATGC ATGGGTCACCGAGAGGTCAAAGGTCACAACGCTACGTTCAAGAGATGCCTGGGATGCCCCAGCAGCAACA GCCACAGTACCCCTTGCCACAGGTACCTTATGCACATCAAGTTCAAGGTAGAATGAGATCTGACAGCGAA CCGATGGACATATCCAAAGTCCGCGGGGACATGCAGGGCCAACCGCCCAATTTCGGTCGCTACCCGACCC ATGGCCGAGAGCGATATGAACTTGGGTCTGTCGGTAGGTCAACAGGTCATGCTATTCAAGAGGTCATGCA ACGGGAAGGTTCTGGAGGAAACCTGTCTCAGGGTTCTGATCATTCACAGGAGCGCCATCGCCCGGACAGT CGGGCGTCGCAGTCGTCGCATCAATCTACGGAAGGGTATGGACCTCAGAGGAGACGGTCGATGGAGATGC AGTGCGGGGGACAGCATGCCCATGAGCGGTCAGATAGCCAGGTTTCCAATGTGAGCCAGGGCGAGGAGAG ACATAGGACAGCGCCCTCACCCCGAAGCAAAAAGAAGAAACAGATGCCGAAGATGGGTGTGACGGCGGCC ATGCAAAGAACTTTCGGTGGGCCTCAGAGTCCAAATGCGAACCTCCCCCATTCACAATCAGGGGAGCGGT TGCAGCATTTTTTTGGACAGCCGACGCGCAACCAGCTTCCTCCCCAGATCCAGACCCAACCTCCTAACAT GCAGGGTTTTGTAGGACACGGCTACCAAAGAAGTGACCAGGAGAGTCCTCGATTAGCCAGTCCGATGGAT TCCTCTTTCTCGCCGCCAGGTTCCAATTTCAATCGAACAGCCACTCCTGATTCCTCCTCGAGTTTAGACT CATCCTCCCAATACCCTAGCACCAAAGAGCGCCATCTAGTGCCGGGCTACGGTGCAGGATTCCCCGACCA GAGAGGGGAGCACATTGTACATAAACATTCAGATAGCCAACTTTCACAAAACTCTCAAAACTCCATATCG TCCCATCATTCGGACTCATCAAACCGACCGGTAACTTCAGATTCGCAACGTTCCCAGTCATCAGAGGACC TCAATGGACCCACCTATGTCCACGTTGGCCCCCCTTCCCAAGAGGACCAAATCCTGTCCCACAGACATTC GCCGGCCATGCAAGCGCCGAACAATAACCTCCCGCCGCAGCTTTCGACGGACACCGACGAAATCATGCCG GCGGACCCTATCTACGCAAACCTGGAATTCATTGCGCAGCGCGAGAAGGAGGATGAGCAAAGGATGGTCT TGCGGGAAATGGACCGGTTAAGTGGAACCCAGGATATCGAGATAAAGTTCCATCGAAATGTGCACCCAGG ATCTCAAATGGGACGGATTAACGGGGAGCATGAGAACAGGAGTTATAGTCTTGAAGCTTTGGACCAGCAT GAACAACTTGCTAAGGCCGGCATCAGACTCAATAAGAGTTTCGACTCTGAAGAGAGTTCATCCCGCGATG CCTCGGGCACCCACGAGAGCAGCCCGATGAACACCCCGGGGTCTCCGCCCTCCCCTACGTCCCACGAAAC CCACTCGATGGACAGCCCCCTCACCGAGACTGTCCACGCCTCCCTCCAACGGGGGCACCACCGCGGGAGC ACGACATCGTCGACCAGCGGCGCCAACATCATCCAGAACAGCGCCTTCGAACGCAGCATCTCCGTGCAGG ACCAACGGCCCATCTCCATGGTAATATGCGAAGCCACGCCCCCAGTGGTTTCCGATGAGTGGAAGCAAAA GACAGGAACGGTTCCACACGGTCTAAAGAACAGCCCGTCTCTGATCGCCATCACCCGCGGAGGGAACAAG AAAGGGATACCGACCGGAGAGAACGATTTGGAGAACGTTGCTCCGGAGAACCTGAACAGACATAAGAAAG GGCTGTTTAGGAAGAAGATCTCACTCTCACACATGCTCTCTTGGACAAAGGAGCCAATCAGGAAATCAAT GCTGATGACGGAAGATAAGGCTGTCAAGCGGGAAGCACCGGAAGTTTTCAAACTGACCCAATGTTACATG GGTGACCGGGTCATCAAGGGTCATACCAGGGAGTCGGCCTTGCTTGACCTGGTCATTAAGGGATGGTCAA TCGTTGCACTAAGAGATGAGGTCTACATTCAGGTTTGCAGGCAAACATCGGACAACTACCAAGAGGACAG CTTGCGTTCAGGCTGGGAGCTGATGGCCATTCTACTCTTCTTCTTTCCTCCCTCCGTATCGTTTTATCCC TACTTGGAGAGTTTCATTGTCAAACATTTATCAGGAGATTTTGATACTAGAAAGGTGACAGTGAAGGACT ATGCTGAGCAGTGTATGAAACGATTGGACAGGGTTGCTCAGTTTGGGGCTAGGAAGGGCAACAAGAAAAT CACTTCAGATGAAATCGCAATCGCAAAGAATTCCATCTTCTTTCCTTCTTTGTTTGGGAATACACTGGAA GAGGCGATGGAGCTTCAGAAGGACCGTTTCCCGGAGTATTCCTTGCCCTGGGTTGTGGTTGTACTGTCTG AGGAGGTTCTAAGGTTGAATGGACAGCGGTGTGAAGGCATCTTTAGGGTACCCGGTGACATCGACGAGGT CAACAGTTTGAAGCTCAAATGTGACCAATGGGTACACCCAGAGTGCTCTGACCCCCACGTCCCCGCCTCC CTCCTCAAACAATGGTATCGGGACCTCTACATGCCTCTCATCCCTAACGAGTTCTACGACAGGTGCATCC TCATGTGCAACGATAAGAACGGTGCCCTCGAGGTCGTCGATGATCTGCCGGATCTTAACCGCCATGTCCT GACTCATTTTATCCGGTTCCTACAGATCTTCGCACTTGACGATCATGTAGCCATGACCAAGATGGATGTC AACAACCTCGCAATGGTGATGGCGCCAAACTGCCTCCGATGTATCTCGGACCAACCGGAAATCATCTTTG AGAACACTCGCAAAGAAATGTCCTTCGTTCGCCTCCTGATCCAGTATTTAGATACGTCATACATGGAGGG CATCCGGTAATGGCAGAGGAGATCTTGATCAGATGGTCAAATAGCTTAGGGTTCTGCTTGATTTAGAAGG GTGTCCGGAGGCCACTTCAGTGGTTATAATATAAAACACAATGAAATAATGTCCTTTGTTCGTATCTTAA TCCAGTATTTCAATATATCTTACATGGAGGGCATCCGGTAATGAGAGCAAACATTTTGATCAGAGGATCA AATTGCCTAGGGTCCTGCTTCCTTTAAAAGGTTCCGGAGGCTACTTAAGCGGTTATAAAACACAAAAAAA TGTCCTTTTATCATATTTTAATCCAGTATTTAAGTACTTCTTACAAGGAAGGCATCAGGTAATGACAGCG GAGATCATGCTCAGAAGGCTCCAGTAGCTAAGAGTATGGCTGCCTCTAGAAGGGTGTGTAGAGCCAACTT AAGAAGTGTTTATAGAATACAAAAAAATGTCCTTTGTTCGTATTTTAATCGAGGATTTAGATAAGTCTTT ACATGGAAAGTATCCGATAATGACAGACTCAATCATGTACAGAGGCTCCAATAGCTGAAAGCTTAAGGAT TCATTTCCAAACAACTTAAGAGTTGATTATAGAAATTCAAAGATATGTCCTTCGTCCGTATCTTAATCCA GTATTTAAATGCAACTTACACGGAAGGCGGAGGTCCCGTGCGGAAGGTTCAAAAGTTGTGGGTTATGATC GCTTTAGAAGGATGTCTCATATTGTAACTCAAGAACTGGTTGTAGCAATGCAAAACACAAGTCTTCAGCT CCTCCACTCATGCTGTATCTAGGAATGCATACAAGATCTACTCTACATGAAATTTGATGCTGCTACTTGT TTGAAAATGCCCAAAGCGTCAATACCTCAAGGTTCTAATGGCTTCAGAATGATTCTTAAAGCGATGAATG AATTTTTGTTTTCCAGATAAATGTCTCTATAAAAAAATCTGCTCGTCGTTGTAGCCATCATTTATGCCAC GGCTTGTTTTTGCTTTCAAATCAACACCAACGTACAGACCACACCATTAAGTACTTGAAACCAAGCTTTG TCCCTGTTTCCGCTGTTTGAACTTTATAGGAAAATATACAATGTTCTAATAATAATTAACATTGATGATA ATAATGCAAGTTATGAAGCACTTGTATCCACTCGACAGAGGGCCCAATGTGCTAATTCTCTTGTGTTACC TTGGCTGCAGTGATGCCAACCATTAGGGAATGTTTATCAGATAGGAAATTACAATGTGAATAAGCAAATG GCTGAACCAAATGTTTTGAAACAACTCAAAACATGTGAACAAAAGTTTTTCTCTAATCTTTCAATCGAGA AGTCAACACCGAATTTACAGTAGAACACATCTCATTGATATTCTGTAAGGGTTGGCAACTCTGTGGGTAT AACTGGCCACAATCCTGGCACACAAACATTTCAGTGGATGCATATTCCTACAAAGTATTCATTTACTGGT GGATGTTGCATAAAGCTGTTTGTAAGTTAAGCAGGGAATATTTTTTTCCTTGAGAGCTTCTCTCTTATGA CCAAAAATACTATTCAAATTTGTAAAGCAAAGCTATTCCCTGTTAATAATGACTTCACACTCATGACTGG CAGGCAAATTTTTATTTTATTTTGATAATTGTCAAGGGCCACTTTTCCCAAACTTTTGGCTGGATCTGCT ATATTTGTGAAGCTTTCACATTTTGTTATCAAGTTTTCTTTGGTGCATTTTTTGGGTGAAATTTTACACA ATATACACCTTCGTGTAAGACTGATAAATGTTTGCGAAATGAAATCCTGCATGTAATCATATTTTTCATG CCTTGTATTCATTCTATATCTGATTTTTTTTTATTTCACTATCCGTTTACAATTCACCAAAGTTGCTATT CATATCAGCGCCCAGTCTTACAAAGAGTTATGATTGATATGGGGCCTGTTGCAGAAAGAGTTGCGTTTAA ACGCAAGTCGAAAAATCAAATGCAGGTCCCAGATGCGCGCTGTTGATTGGTTGAAAATCAAGTTGCGCAT GATTTTTAGAGTTGCGATCGATTGCAACTCTTTCTGCAACGGGCCCATGATCATCTTGAATTATATGGAA ATCCAACATTTTCAACAGGACATTTGCATGATGTCCTTTGTAAACAAAGAGAAGCACACTGAATTATCAA G
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds