Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038204406.1 PREDICTED: Patiria miniata 2-oxoglutarate dehydrogenase, mitochondrial-like (LOC119731274), transcript variant X2, mRNA CAAGAGGATACGGATAGAGCGCGCATAGAGCAAGGAATGGGAGGAGTGCAGTGACGAGAATCTCGTTCAG TCGATTGCAATTTATCACAGAAGTCAGAAGTCAGTGACTTTCAGCGATCGCAACATCGTCGAACTTCCAC AGAGTATCAGTGAACCAGTGTAATTATCTCAAGCAAGAAATACAATCTGCAACATTCCAGTGCATTGGAA ATGTGAGGCCTTCCTTCCGCATTGCTATTGCATCACATCATCGATTGAATAGCACGTACACGGCGTAGGC TACATGCAACTGCTCAGCACTTGCGAAATTGCGGGATTTCCCGACCCATTTACCGCTTGAATCTGCTTTT ATTCCGAGAAAACAATTGATGGACCCCACACAAGATTCACCATAGTAACTGCCAGTGCTGGTACCATTGT CATTTTCCTTGACATTGTGGTGTTGTGAAATCAGCGAGTCAGCGCGCTTGGTGTAATTTCACGCCGCGTG ATTCCAGCGCGGACAACAACAGAATCGACGCCGGCTGAACGCGTCGATCGTCGGCGGCAGTTTCGACGAG TGAGTTCCGTTCCAGCGTGAAACTGGAGCGACCGAGGCACTTTAGCCTTTTATTGAGACAATATTTTGGA ACTTTCGGCTTCGTGCCGGATAGGACTAACCGCAGAGAGCGGAGTGGAGAGCCAGAATGCACCGATTTAA GACATTGTTGACGTTGGGTCAACTCCGGACAGGTAGTTTCAGGACGTTAGGGGGGCCGGGTTTGACCGGC CAGGGACGCCAGGCGCGGCGGGCTTATGTCTCGCCTGTGGCCGCTGAGCCCTTTCTGAGCGGCAGCAGCT CAAACTATGTGGAAGAAATGTACCAATCTTGGCTGGAGGATCCCAAATCGGTGCATAAGTCATGGGACAT CTTCTTCCGCAACGCTCAGAATGGAGCCGCTCCCGGTATGGCGTACACCCCGCCCCCAGCACCTACCCCG GCGATGTATCAGACACCTACCCAGGCAGTCACTGCGACACCCACTCGGACACTGGGGGCGCCCTTGGACC GACGTGTCATCGAGGATCACCTTTCGGTTCAGACCATCATCCGATCCTATCAGCTTCGCGGTCACCATCT AGCAGGCTTGGACCCACTACAGATTAGCGCAGCATGCACGGGACCCATACCAGAGCTGGTGACCGGCAAC TATAACCTAGGTGAGCATGACATGGACAGAGTGTTCACTTTACCACAGACGACTTTCATCGGCGGGGAGC AGACTGCGTTACCACTACGGGAGATCATCAGAAGACTGGAGGACACTTATTGCCGGAGCATTGGAGTGGA GTACATGTTTATCAATGACCGGCAGCAATGCGATTGGATCCGGGAACGCTTTGAGACGCCCGGCATCATG CAGTTCACTAAGATGGACAAACGGCTGATACTGGAACGACTGATACGCTCCACAAGATTTGAGGAGTTTC TGGCCCGGAAGTGGTCGGCCGAGAAGCGCTTCGGCCTGGAGGGATGTGAAGTGCTGGTGCCTGCCCTGAA GAGTCTTATTGACGTGTGTAGTGGCCAGGGAGTGGAGAGCTTCGTGATCGGTATGCCCCACCGTGGTCGT CTGAACGTTCTGGCCAACGTTGCTCGCAAGCCCCTGGAGCACCTCTTCTGCCAGTTTGACTCCAAGCTGG AGGCAGCTGATGAAGGTTCTGGAGACGTCAAGTACCATCTTGGCATGTCCCACTCGCGCCTGAACCACAT TACTAAGAAAGATATCCACATTGCCATCGTGGCTAACCCTTCCCATCTTGAGGCCGTTGACCCTGTGGTT CAGGGTAAAGTACGCGCTGAGCAGTTCTACAGAGGGGACACTGAGGGCAAACGGGTGATGAGTATCCTGA TGCATGGTGATGCTGCGTTTGCTGGCCAGGGCATTGTCTACGAGACCTTCCATCTCTCTGATCTCCCAGA CTACTCCACGCATGGCACCATCCATGTTGTCGTCAACAACCAGATTGGTTTCACCACTGACCCCCGTTAC GCCCGCTCCTCTCCGTACTGCACAGACGTGGCCCGCGTGGTCAACGCGCCCATCTTCCACGTGAATGCTG ATGACCCTGAGGCAGTCATGTACGTGTGCCAGGTGGCCTCGCAGTGGAGATGCATTTACGGCAAGGATGT TGTTATTGACCTGGTGTGCTATCGACGCAACGGCCATAATGAAATGGATGAGCCTATGTTCACACAGCCA ACTATGTACAAGAAGATCCGCAGCCATCAGCCGGTACTGTCCATGTACGCTGATGCCAAAATCAAAGAAG GTGTCATGACACAGCAGGAATATGAGGAAGAACTTGTAGTTTATGACAAGGTTTGTGAGGATGCGTATCA GAACGCAAAGACCATCGCACAAGTCAAGAACTCGGATTGGCTGGATTCACCTTGGACTGGATTTTTCAAC TATAACGTGCCGCTTCGCTACCCGTCCACTGGGATCAGTGAGGACATTCTGAGGGATATCGGAGAGAAAT TCAGCACTGTCCCTGAGGATTACAGTCTGCATGGAGGACTGAAGCGGGTACTGCGTAGCCGCCTGGACAT GGTGAACAATCGCTCCATTGACTGGGCCCTGGGAGAGGCTTTGGCCTTTGGCTCCTTGCTGAAGGAAGGC ATCCATATCAGACTGAGTGGGCAAGATGTCGAGAGAGGAACATTCAGTCATCGCCACCACATTCTGCATG ACCAGAACATTGACAAGAAATACCTGATACCTCTGAACAACCTGTATCCAGACCAAGCCCACTACACCGT CTGCAACAGCTCCCTCTCAGAATTTGCTGTCTTGGGTTTTGAGCTGGGCTTTTCCATGACCAACCCCCAC TCCCTCGTGATCTGGGAGGCACAGTTTGGGGACTTCCACAACACGGCGCAGTGCATCATCGACCAGTTCA TATCCAGTGGCCAGGCCAAGTGGTGTCGGCAGAGTGGTATTGTTATGCTGCTGCCTCATGGATACGAGGG CATGGGACCAGAGCATTCGAGTGCCCGCATTGAACGCTTCCTGCAGATGAGCAACGACGACTCTGATGTC GTACCCGCTCTGAATGAGGACTTTGTGGTGAACCAGCTGTACGACTGCAATTGGCAGATTGCCAACTGCA CCACGCCCGCCAACATGTTCCACATTCTGCGCAGGCAGATCATGTTGCCGTTTAGGAAACCGCTCATCAT CTTTACACCCAAGAGCCTTCTGCGCCATCCAGACGCTAAGTCGTCCTTTGATGAAATGGTTGAAGGAACA ATGTTCAAGCGCGTTATCCCGGAGGATGGCGCGGCCTCCCAGAATGCTGCCAACGTCCGCAAGCTGGTGC TGTGCTCGGGCAAGGTGTACTACGATCTGGTGAAGGAGAGGGAAAAGCATGGGCTCAATGCTGACATTGC CATCAGCAGACTGGAACAGATTTCCCCATTCCCATATGATCTGATCATCGAGGAGATGAATAAATATCCT AACGCTGAGATCCAGTGGTCCCAGGAGGAACACAAGAACATGGGAGCCTGGCACTACGTCCAGGCACGCA TCCACACCGCGGGCAACTGGAAACGACGCTGCACATATGCCGGTCGGGCAGCCTCTGCAGCTACAGCAAC TGGCAACAAGTACACTCACGTCAGTGAACTGGATAATCTACTCGGTGAGGCTATGAAGCTGGAGTAAACC AGTTCCATCCAGTTTGCTCATCGTCAGCCCCGGAGGAATCTCATTGTAATTGAGGGCGTTGTAGTTCTTA TTGGCTGAATGATGTGTTATAATGTAATCCAGTTTTGAAATCCAGTTTTGAAAACTAGAAATCCAGATTT GGCTTGGTTTAACTTGGAAAGTTCAGCATAGGGGAGAGAATATAGGTCTTACATTTATGCTTCTTAAAAA TCATTTTTTTTAAATACACCATGTTTTTTTTGTGTTTGCTGAAAGTGACCACTTCCAGTTTTGTTTCTTA CTGCATGTTTTGTTCTTCACGACAGAAATCAAATTCATTTCAAAATTTTTCAATCTCGCTTACATGTGCT TCATGAAAATTATCTTTGGGAGAAAAACAAAACAAATCAGGGATCTTTCTAGTCTTGTTTGAAGACAGGA TTTGTAGTTTATTCCATTTATACAGCCGGTCCATGACAAGGCGAGAGGTGACAAGATGAATCGAAACCAG TCTTGGCAATATTGGCAGCGCTAACCAGGAAATTCCGAGTACACCTCACACGCACTGTATTCAAGCTAAT GCATGCTTTCCTCGGTAGCGCTGCCAATATTGCCAAGGCTGGATTTGATTCATCTTATTAATGCTACAAA CCTCCACCCCCGCGGCATCTTTACCGCGTTTGTCACGGGACTGGCTGCAAAATAGGGGAATAAAAACTCA AGTCCAGTCTTGGAGTAAGACTACTACTAGTATCTTTCATGTCTTTGGGAATAATTCTTTGATGGTTTTA ATTCTTAGTGTGGACTTTAAAATTACCCTGTATCATCACTACTCATGCACAATGCGTTGGTTATAAAAAA AATTAAGGACATTTGAATGGGCTGTTTTCATTTAGTTTAATATTCAGGAAGTGAGATTTTCTTTCAAAAT CATCTTTAAGTTGAATTTCCTTGACTGATAGAAGTATCCAATAGTGCACCGAATTTGAAGTTAAAATGTT GTGGTGATATGGGCATGTATTTATTCTGACTGTCGTCTTCATGTGTATTGTGTATTTTCTTTTCAGCTTG GAATGTTTCACTTTTGAAGCAATCTTTTTGGTGATGGTGTTTCTTTAGATTTGTTGCTTATCTTCTGTCA TGTCTGTAGTTGAGGATGATTTGTTTCACACTCAGATATATGGGATATTATTTCTCCATGTTAAGAAATG CTGCCTTGTTAGAATGGGGGGGGGGGGTGGACAGTTTTCACATTGGCTTATCTAGCTCCCAGACCCATGT TCTTGAAACTCAATGGTTCTTGAGTTGGGAGTGCTGAATGGTATATGTTCTCATCGGATGACGTCAGCCC GCCCCACCTATAGCTGCTTCCGACTACAAAATATTCAAACCATTGCGCTACAACTTAAACATTTATCGAT TTTAAGAAAATGTTGAATTCCTTTGCAAGAACCTCCATTTTGTCATCCATAGCATTTCATGCATTACTTT TAATTTTTACTTATGGTTTAGTTATTCACAAAAATACTTTTTTGACTGAAATGTGAAGTGCCTTTGTTGT CAATTATGACAGGATTTTGTAGGCCTAGTTGTTTTGTGGTTCTGTTTTGCTGGTCAAATCTCCATTTCAA AATGTTGCATTTGTTTTGTTCTGAAATTCAATGTTATCCAAGTTTGTCCGACTGAGGATTGGCTGGGAAT CTGGCATTGTTGAAGTTGAGTAACTTAAATGCAGATGCCAACATTTGTTTGTTTCGTTTAGTGCATCCTG GCTGAACATGCAACTGGATGGCTAGGATTGATAAATTCAAGCATGTTACATCATCATTCAAATAATGGTA CAATCAATGGTGCAATTTTAGGACGAAAAAAAACCACACTAATTATTATTTGTTTTCGGTAATGAAACCA AGGATTCCTCAAAAGCGCCATTGGCACTGTAGCTCGCAAGCCTAAAGAAAGCTGTTGTGAGAAGACAAAA GACTAGAAGACATTACAGTTTTAGAGGTGGGAGGAAAACCCCAGAAGAATATTCTGGGAAAAACCCACGG AATCAGGTAGGGACTGAACACCCAATCCAGGAATCGAACCCGGGTCACAGCGGTGGAAGGCGAGGACAGA ACCATTGCGCCAACCTGTTTCAGGTATAAATGATACAGTACCTTGTAGGAACACACGTTAAACGTCTGAC AAAGTGAACGTCTCGAAAGCTACAGATGGGTAACAGCAATTCTTGTGTTCGCCTCTTTCAAAATGGCAAA GTCTTAATATCGCAGTGCAGTGGCACAATAATATTGAGCATTGTTCTTGTAGTTCTGCAAGATATTTTGG ATTTGCAATACATCAATGTTAATTAGCCGCAGAAACAATGTACGATGTGTACATGTACATGTCAATTTAA GAACAGTAATACGCAAAACGAAAGTCGTTTCTTACTATTGTAATAGTTATTTCATGATCATAAACCACAA CAAGACTTCCGGGGGAATGGAGTACTTATACCAAACGCTGTAAGGAATCTGTTGATCAAAATGCCATGTC TTTGAATTTGGAGCAGAAAGGGAAACACTCGATGATTATACCTGTATATAGAAAAATGAGCACTTTGATT TTAATCATGGCTGAAAATGTGTCAACTTTAGGATAATGCATGTGCCTAATAAACACTGCCACTGGTTGGC GGGTATAAAGAGAAATACTTTCGGTGCGCATGCGCGCATTTGCACGTGACACTTACAGAGCTTCCACTTA TTTACGTGTAGTCAATCGAATGGACTGTTGTATCATTCAGGAATTTTAAACGTGTGCGTTAGCAAAAACC AAATCAGTAGTTGTGCATTTTGTCACGGGCAACCAGTCCATCAAGCCCCACCCATTGTGCACGTGGGCTG CTCCAGTCACTCGCGTCACACACTAATCATGGCTGTGATTGGTCAAAACATCATAGGAGGGCGGGGCTAA GTGGATTGGTCCAGTTGCTGCGTTTAGTTGAAATATAACTGGATGGGTTTTGAAGTACATGCCGCATTGA TTACGAGTGTGAGAGTGTATTTTTGCAAAAGAAAAGAAAATTGACGTGATTTTACAAGTAGTGTCTTAAT ATTTGTATGTGTAAATAATGAGAAAAGATACATAAAAATGTGCCAGAATTGAGCCGTTTTAAAACGGAAG TTGTAACACGAAATGCATGTATAACTAACTTGTAGTTCCGTATACAACTTTTAATAGTTTAGCGTAACGT GTCCACGATTCCAAAGAATTGTACTATTTAAAGTACGTCACCTATATAATGTTAATAACTTTGATTTTAA GAACATAATTCGATAACACTGCACGAACATTAATGAAGAATGAAAGACTGTTCGTTTGAAATGTAACACA GAAGAGGCCATTTCAAACAGATATATCAATAACCAGTCAACGTTAAGGCAATTGAAAAAATAACGGTGAA GAGCGAAATTGAAAATAATTTGGCTCGTAGTATTTGCAAACTGGATAGATTAAAGTTTGCCCTGGAACAA TATTGAAAGGGCAACCGCATGCATTCAACAAAATAAAGAATGCTTTCATGTGCTGGACTGTGACCACAAA TTAAAATGTTGGGATTCATTTTCACCGTTTGTTCAACACTAGTCATATTCAGCCTGCGAGTGTATCAACG ATGGCTTTTGTGATCGTTGTTCATGTATTATGATGCAACAATAGGGGGAAATATGTTATAAAGTACATTG TCACGACAGTCGTTTTGAGTGCTGCGTCTTTAATAGACATGAAAGACTGTGACATAATGACGTCCCGATT TTTTCCTGTGCGCTTTCTTACGGGCGCTCGTTGGCTTTCGTCCCCATGGCAGCTTTATGCAAGCGCACAT GTTCATGTAAAAGCGTGACGTCATTATTTTTCAGGCCCATTGGGCACATCTTTAACAGTAAACATGTGGA TTTTTGAACTAAGGTGCATTTATTTGTTCCCGCTCATAGTCGTGTTTGATGATATCAGAGATTAGATTGC CTAGTCATGAAAAAGCAATGATTGAGGTATTTTTCATGCACTGATTCGTTTTGCTTCAGAACTGATTTGA AGAGTGAAATAAAGAATATGTAGAAAAACAACAAACACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds