Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030982912.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC100892589 (LOC100892589), mRNA GCAACTAATTTCTTTCATCGTACCACTGTCGCAGTAACAAGAGGTCACCAGTTCAAACTAGAAAAGAAAC GTAAAATCTAAATTGAGGCAGAGCGCTTTTTCACAGAGAGTAGTAAACGAATGGAATGGTCTCCCATCAT ATGTAGCAGAAAGTCCATCACTCAATTCTTTAAAATCAAATCTTGATAAGTACTGGTCACTGAAGAAGTA CAAGTTTAATCCTGATGAACTATTCAACTGTCCATGTTCATCCGTATTCCGTAACTGCGCAACGCCAAAT TCAAGAGTAACACACTATAGCGGACACCGAGAGCCAAATAGGTTTTGTATAACTTTATGCCTACTTCCAA GGTATGAGGTATGATATACGCTTCTTCTATATATAGCCTACTACAAGTCTACAAGTCCGGGTATATATTT CATACTTGGAAAAGGTCATATGATTGCGTTTTTATTTTTCCGCCCATCGACCACAACTCATGTGCGTGCT CCTGCTATACGGCTGTAACATTTTTTACGCACACAGGTAGTGGGAAATAGTACCGTGTTGAACTTTTAGG GGACAAATACGAGATACCAGCGCAGTGGAGGTGCTACTGTAAGTGTAATACTCTTGGGCGAAAACCGTAT TGGCAGGCAAAGATGTTTGGAATTCCACTATCTCTCCCTACTCTGATAGGAATTATATTAAATGTTATTT TGCTTAAATCTGAACCAAGCTCTGGAGTACTGACATGCACTAGCCCCTGTCAACAAGCGGATGCAACTGG AGCTTCAGGTATACCTTTACCACCATGTGTAATAAGTACTACAAGAAGTTGTGAAACCGATGTCACTGTA CCTATCAATCAGGCACCTGGTCCTCCCCTCCAGGTTGGCTTAGACTCCTACTCCTCCTCCTACATAGCAA CAGATGGGAATATATACCTTGATCTGGCCCCTCGCTGGAAGGCTTCGACAGATCGCATCAGCCTTTTGAC TGGATATGAAGTTAAGGTCATGTGTCACCGAAGTATTTGTGCAGCGCAATACTTCTGTGTCACAATTTCA TTCAACAGAACATTGACGGTTAATGATGCTCAGTCCGATTTCTCAGTGACTTGCCAGAATGGAGATTTTG CACAACCTGACATGGATTACGTCACCATTATCCGCAGCCTACCAAACAATGATGATAATTCAAATGAAGG AAGATTTCTTACAAAACTTCCAAAGTGTGGACAGGAATCAAATTTAACTGTATGCAACGTTGAATCACCC GTCGATTGGATCCCGAAATGGCGGCCAGACGCTACTCAAATTAAAAATGGTTCCGTGGTGGTGAATTTTT GGCCTAGCAATAAATATACGGTCTATGAAGTCTGGCTTGAGAAAGTGGGAGGTAATGAGGAAGTGGGAGG TAACAACAATGGGCAGCATTTAATAACCTTCAATACGGAAACTGATCATCCTCCTGTGCTTTTCGACAAC GTACAAGAGGGAACTTATAGAGCATATGTATGGATTAATGAAGCACTGTGTGAACAATGTCCGATGATTA ACTCCAACAAAAACATCAATGTTACAGCTATGACCCATCCTACCACATCAACCCATCCTACCACATCGAC GACCCCTCCTTACCAACCTACACCCTCTTCACATACTAGCTCCCTCAGACCGCCGAATGTCAAATCGGAA CCCAGTCTTCCATTGGCAGCAGTCTCTGGAGCTCTGGGAGGAGTCCTAGTCGTGGTCCTGATCTTGTTTT TTGTCTCCCGTACCTGCAAGTGGAGCCCTGGTGTCCCCAGCATGTTCAAGGAGACTGAGGTTGGAAGTTT TCCTACAGAGTCAGCCATGTCTCATCAGAACAACATTCCATATAGTGACTGTGATTCTCTGAATGGAACC CAGTACATCAATCACTTCACTCCGTCGAATGGAATTACCATCTACTCTGACTACCCCACCTGCGGATTCA CCAGTCCCTCCATGGTACCAGCAACTATTCACCATAACAACATGATGGCCAATGGAAGACTTATGCAGGA GAGTCAGGTTTATGCCAATTCCATGCCTTACAAACAAATGGATAGCATCAGTAAAGTTGCGGATATACAT TCCCCTATGGACGTCCAAACACCCTCTAAAATAGAACAACCGTCATCGCCTGACTCTGGTTTAGAGTCAC TATACTCAGATGGGACAATGGAGGATGGTAGAACACTGTTCTCTTTAGCTTTAACTTCTTTGGGGGATGA AGTGTAGTATAAACTCAATTCGTATATCATGTTCCTTAAAGATTGGGCTATTTTCACTCTCATTCTATCA TCAGAAAATGAAGAGTGGTGCATTACTCAGTCAAGTTATCTACAAATTTGTGTTTTTCATAATAAAGTGG TCAACGCCATATCTGAACGAGGCATAACACAGTTTAAAACGCACTTACAATAAGGACATAAGGGTAACAA GGACATTTAATGAATCATTTAGAGCATTTACTATAAAGAAATGTGTATTGTGAACACACTCTACAAAGTG GCTATCATGTACAATCTTGATATAGTTTTTTGACTATAGGGCTTCAATGGTGCTGATTACTGTTTTTAGA AGTACAACAGTTTATGACATTTTAAAATTCATAAGATGTACGGTGCTAATGAGGTCATGTTAAAGTGCGT TTTAAACTGTGTTATGCCTCGTTCAGATATGGCGCTGTAAACCATAATGGTTCGTTTTTTTATGATAAGC ATGTAAATGTAATATGCTTGGCATCTTTTAACACATATCTTTAGTAAATATACACAGGACCCTTTTTTGC ACTCAGTTGCTACAAATTTATCTACAATACAAAAAAACAACTGACGGTTTAATGCTTTATATCTAGACGT GCTTTTAAGGCATATCAGGGATTTTTGCGATATGAGAATGTGGGGGATAGAAGTGTGTGGGAGGACATGT GGCGAGTGAGTGTGTGTGGATGTGCGTGTGTGAAGGAGGATGTGTGAGTGTGCTTGAGAGGATGAGGGAC TCAATGATTTGGGATTTGCATCAAACAAGGTCCATAATTATCATGTTGTAATATCAGCAATATAGACATG GATTCGTTTACACACAAGGAAATTGATGGTTCATTGTAAATGGAGAGATTCCTATAAAAATAGTGGAAAG AGCGCCATCTGGTGCAGACATCTCTTCCACATTGATACTGTTCCAAGATACTATTCCATTCAGCTGTCGT GTAGTTATAGTATAGTATAGTTTTTTGTTGTTAATGTAAATTTGAATTTTATTGCTGAGTTTTATTGCCG AGTGAAAATCAAACTATACAACTATGAATAGAATTTGTACACATTGTGTACACATGCATCAATAAGGTTT GTTTGTAGTTTTCAAACAACATTTTCTCGTCTTTATATAAAATTGCAATAAGCAACCTTTTAAATAGTAC CTTGATGCACATCAAAGTTTATTTTAATGTGAAAAAAGATGTATAATAAATTAAAAGCTTATTGGAAAAT ACCTTGTGTGTACCAAAAGTTGTTTAACCTTAATTATGATTTATGAGATTTATGTATAAACAACAATTTT TATCTTAGTAAAAATTGCACTTTGATTTATTTCTGACGATGCCTTTTACCTTTATAAAACTGAAGTAGTA ATTCATTTGATTGTTAAATTGTTTACTATATGTGAGTGGATTCTCACTGTTTTTATGGTATGCAATCAAA TCTGTTCACTTACTATATAAACCTAATCATATTTCCTCCCCATTTACTTGTTCAATTGATACGATTTTCA AGATATTCCAACACAAGTTATTATTCAAGTCATTTGATCTTTTCAGATTAATGAATCACGAGGCTGTGTA GAAAGTTGATTATGCTCATAAGTAGAAATGTGTTGGTGGTTTATTAGTTGAAGAGGCAGACAATGAGGCC TATGTTATGTGCATTTCAATAACACGCAGTATTTATATATAGATTTTAGGTGATTTTTTTTCAACTGTTA AAAATTATCAACAAAAGTGAGAGCAGAACAGACAGAAATCATTGACATGATTGAAGAAAAGGGGAAAAGG GAAACATTATATGAATTGGTTCAACAGAATGATATTAATGTACATCATGAGCCAAATTATTGATAACTAA CATTTCCTTTTCGGACCTGATAGCACAAGATATAGGCGGAAATATGCACTGACGTATGAGGAAGTAAAAT TCCTTTTTTCTCGGTTATTGTTTATTGCATGATTAGTGGTTAGTGTTGTTACTTTTATACTTTATATTTT TATATCTTTAATAAAGAACGATGAAGACTGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds