Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030975156.1 PREDICTED: Strongylocentrotus purpuratus protein CBFA2T1 (LOC576535), transcript variant X2, mRNA AAAAATGTGTGCAGTAAGGAGAGTTGGTCTGCTTGGTGGTTTTGTCAGTGTATGCGTGTGGGTGTACACA CAATGCAGTAGTGGGTGTAATAGTTTTCTTCAGGAGGGAGGGTTAAAATAACTCGCCTGTGCGGCTACCA ATGAATAGGACATATGTGCATTTGGGAGTTGAGTGCATGTTCTGTACCAGGAGGTCATTAGCTAAGTAGA TTGCCGAGGAGGGAGAGCGAGCGCAAGCAGCTTAGCGTAACAAAAGCAGTTTGTTCGTCTGCACTGTGGG TAAAAGAACACTTTGGCACTGGCGAGTAACAAGGCAGCAGTGGAGCCTGCTAGTAAAAAAAATTGTTAAA AGAAATAGAAAGCGTGAAGGCAGGCAGTCCCATTGTGTGAACTAGCTATTACCAGAGTTGCAATCTTTCT CCCTGCATGTCTCTGTGTTAATTGGACATTGTGGATGCTGTTAGTCATGGTTCCAGGCTGACGTTTTGAC GGAGCTGAGCTTGAGAGTTTCCTCTCCACTCCCTACTGAACTATTGCTTGATCTGATCACGTGAAGACTC TATATCACTATGAGTATATTGACTGTCAGTTGATGCCACTAGATACGTCACTAGCTACAAGACCTGCATT GCTTAAACATTAGTTGCCAATTCACTATCTGCTGTATTGGAACTTGGAAGACTCAATATATGAACATTGT TTGGTGGGGTCATAGCCTGTAGTACCTACACTGGATTGGAAGATTTTGATATTGTTGCTTTGGAAGAGGA ACAAGGTACTCTCATTGCTGTTTAGATGAATTCATTACCACAGGGCCCACTGCAAGGCAGCCCTCTCATC ATAAACAGGACATAAACATTGACGACTTGTTCACAATTGCCATCCAGTATCGGTGAAACTCATCTGGAAC AGTCATTTTCTAGGATTCTAAGTTCATCATCGGAATACTGAGGGTCTGTCGCTACTACTTTGGATTTGCC TTTCCATTTTATCTGATCATATACTACCACTGCGGACCCAATGCTGGTGAGCGAGAAAGCGCACATGCAA TCGTCATCTCTGCTCCTGCGTCCTGTCCCTTCGGTCAACCTCCTCACGACCCCAATGGGCATTTTGAATG ATCACAGTGACGTCAAGATGCCTGAATCACCGGTAGACCAAGCCTTGACCAAGTCCATGTCCATGTCCCA ACCCAGTTCTCTAGTAGGACCAAACCTCTCAGCCCATCCTAGATCTCATTCAACAAGTTCATCAACAGGT TCAATAGTGAATGGCCTGCATTCACCCAGGAGTATGAACGGTACCCCTTCCCCACCGACAGGCCTTGGGG GCGTGGCTGTCTCTGCTATCCAAGGTGTACCAGCCAATCAAGAGGTCCCTGCTGCTTGCGGAGCTCGTCA GCTCAGTAAGCTCAAGAGATTTCTCACCACACTCCAGCAGTTTGGATCCGACATATCGCCAGAGATTGGA GAAAGAGTCAGAGGTCTTGTAATGGGTCTAGTGAACAATGCTCTAACTGTAGAAGAATTCCACAACAAAC TTCAGGAAGCCACCAACTTTCCTCTCAGGCCATTTGTTATCCCATTCTTAAAAGCGAACCTACCTTTGTT ACAGCGAGAGTTGATGCATTGTGCCCGGCTAGCCAAGCTTAGCCCTCAACAGTACTACCTTCAACATGAA CACCAACTCCTGGAACCCAAGACTAACAGCGTTGACCCCACGGAGCATCTCATGGAGGTCAACGAGAACG GGAAGAGGAAGACACCAGAAGAGAGGATGATAGCAAGGCCGAAGGAGAATGGATCGAATGGAGGCGAGCG TCTGGGGGAAGGGCCGCACCCCAAGAGACACTGTAACGTGGGGGGATCACCAACTCACCCCACCTCAGCT TACCCCCCTCTCAATCACTTCCCTCACTCCCTGTCTGCAGCTCATCATGCCTTTAGGGTGGAGGATCTAG GGACCGGTCAGGGGGCTGGCATCGCCAGGGACTCCAGGGATCTGAGAGAGATGAGAGAGATGAGAGAAAT GAGGGAACGGCTGGAGAGGGAAAGGGAACGAGATAGACATACTCCTCATGCCTTTCCACCATTCAGGGAA GTGTATCCTGATCCTATGTTGTTTGAAGACAGAGTAGAAGATGATTGGAAACATGTTGAGACGATGCTGC AGTGCATCATTGGTATGGTTGAGAAGACCAAACGAGCGTTAGCTGTTCTACACCAGCGCAGCATCCAGGA TCGAGAGGAGCTAGCTCATTGGAATAGGAGACAATCATCACAGTCTGGAGGTAATGAGTCAGGGGGTAAG AAGAGGACGGATGAGATGATGGCTCAGACTCTAAGACAGACGGAGGACAGAGTGACCGAGGTCAAGAGAC GAGCAGAAGAAGCAGTGAACGAGGTCAAGAGACAAGCCGTCTCTGAGCTGCAGAAGGCTGTAACAGCCGC TGAGCGTAAAGCTAATGAGATGGTGAGTGCTGAACGGACCAAGCTAGACCGTGCTATCGTAGAGGCTAGA CAACAAGCATCAGATGAAGCTCTGGGACTTCTTAATCATCAAGAAGACTCCAGTGAGAGTTGTTGGAACT GTGGGCGTAAGGCCAATGAGACCTGCAGTGGATGTAACACTGCCCGATACTGTGGTGCCTTCTGTCAACA CAAAGACTGGGAGAACCATCATAGGATGTGCAGTCAATATGCCAACAACTCTGCTACCGGTGGTCAGCTG TTACCAGGGTTCCCTCTGAGCTCCACTGCTCCTCCATCCATGCCCCCCTCCACCATCTCCGTGGCTAGTC CTTCCCCAGCAGCCCTCAGGAGTCTTACCCCCGTGGTTGTCAGCACGGCAGCAGCAGCAGCAGCAACGGC TGCAGTTCCCCCGTCGTCAGCACCCACGCCCACATCAGCTGCCAGTCCTACTGGATCGCATCACTCCAAT GCATCAAATCGATCAGGGTCTCCGGCAACCGCATCATCCGCTGCCGCCATCCCTCAGGAATCATAGCAGG ATCGTGGGCAGTGATGAAAGAGTTCAATGTCGAGACCGAGTCATGATCCTATTGACAATATTCAGGATAT TGCCACTCTGTTGCTGATCTCCTAAGTCTAATATACCATGCAGATCCTTGCTCTAAGCAGTCCCAAGTGT GCATATAATAGACTATAAAATCCCTTGTGGGACAAATATTTGAGTTTTAAACACTCAACTACAGTGGTAA CATAAATGGACTTGTTAAAAGCCACCTATATAAAGAGTTCCTTCTGTGGAGGATGTTTGGATTGTTTTTG TAGCATCAAGCCAAAACCAATTGATTGGGAAAATCAGTAAACACATCTCAATGTTGTATAGCATGGAAGC ATCACTAGCAAAGATTTTACTAACAACTTATGTCCTGTGGCAAGACATTAATCAACATTAGCCACTCTCC ACCCAGGGGGGTACTGGTAGGAAGGAATTCGTAGAATACCATTAGCACAGTAATCAATAGCCTAGCTACA GCTGGATAATATTGGAGCGTCTTGTTCGCTATAAAAAATATGTTATTATTGAAAAAGTAATCTCTCAAAA TATGATGCGACTTGGAATAGGAATTAAAGTTTAGCTGTTGATTGATTCAACTTATTCATTCCTCTAGCAC GGTGCTGGGCAGCCATTTTGTTAATACAAATCAAGTCATCTTCGGTGTGCTTTTGAAACATACTGTGGTG TGAAAGTTATATTACTGCCTTAGTAGCTATCTCAAGTCTAAACCTCCCCACTCTATATTAAGAATCAAAT TCATAGTGGAGTTTAAACCATAAAAGAATGGATAATGCAAATATCCATTTGAATATAAACAAAATCATTT TTGTACTTCACGAATATGGTAGAGGAGGTTTGGTAATTTTGTGTTTAGAATATTTAATGCAACTCGTAAA TAAAATGACGAAAGCTAGTTTCTTATCTCTCTGGCTATGCCTGCAATGAATAAAACATTCCATGTTAAGG TATAACTTGTCTTTACAGTGATGTTAGGCTATGCAATGTGGAGATTAACCTGGAATTACAATCAAACAAA CTCTTGACAGATTTGAGGGTAAATTTTTTGTTCTCGTTGAACCAACTGCTGGTTGATATTGAACTGATCT AAAGATTTACTGTGAAGTCCACTTGTAGATTAAGGTCAAATGCTGCTAATTTAGATGTCTGCAGGATTCT ATTATTTTGTGTTAACACCCTCATATGTAATATGTTGGAAATATTTTTCGTGAAGAATTTCATGTAGCGT TTCAAACTTTTGTTTTTATTAGCTGGACTATGATATAGTTATATTAGTATTTCTCTTGAAAGTAACTAAG GATCAAAACCCCGCACAAGGTTGTTTTATAGTTTCAAATTTGTACAGAGTGTGGGGTTTTGTATATTTCA GTGTTCATAACTGTTTGTTCTGAGGTTTTGTCATTTTTGTTTTCTGAAACTATTCCCCACCTTGTTAATT TGAATGTGACTCAAGTCTTTAGAGATTGTAATGTCACTAAGCCTTCAGTCTCTTCTTTTCCTGCGCAATA TTCTTTTTGTATTATTTTCATGCAGGAATTACAAAATTGGCTTTGTTTTTTATCACTTGGTTATAAGAAT GATGATCATAATTTTCTTCTTTGTGTGTGAAATTGGAAATGTATAGATAGTCATAAACTGGCACAATTCA GTAGTGATTTTTCTAGGATTTATTGTGACAAATCAAAACAAAGAAAAATCAATTGGCATTTATTATGTAC CTCTGCATTACATTTTGAAGACAAAATTCGTATTATGAAAGGGAATTCCACCAGTACACATTTTCATTAT TTGATTCAAGAGGAAACGGATTAATTTCACTAAAACACCGACAAATATGGCCAAGTTATTTCTCTTTTGT TTGGTAACTTCTTTTATCACTTTTATATTTTAGACACATTATTGAGAAGCTCGGTCAACTATCTTCATTT CATTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds