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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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L. variegatus
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030979763.1 PREDICTED: Strongylocentrotus purpuratus AN1-type zinc finger protein 4-like (LOC115918462), mRNA TTACAGCGGTGTGTGTGCCGATTCCCGATCCGCTTGTACCGTACCGTACTGCTTGGAATTGTACGTACGT ACGAAGTACGTGCGCATATTATCGTACGTGCAGAAATAATGGGGAAAAAGAAATTATTAAAAGGAAACAA CAAGTCCGCAGTACTAATATCGCATTCAATTGTATTTTACCGACTTCGTAGGCAAATAGCTCACGAAAAA TCAGGTTTGACAAGTTAGTGGACCAAATTCAACTTCAAGTCTTTGAAATATCCAACAAATACAGGCACAA TGGCGTGATTTTATGGAGACATCAGCAACTGCTACAGACAGTGCTAGCTACGTAGAAAAGTCAAACATTC CAACTCCAAGCCGGTTTACCTTCGCCAAGATGAGAATCGAAATGGTGGATCAAAAGTGATTTGAGTTTTA CAAGGAAAGGTGGTGAACCCTTAGTTGTTTCCAGATGGAGAGCAACCTGCAGGAAGACACCATGGAGTAC ATTGATTATCCAGAATATGCTGATATTATGGAATTATTCATTGAGACTTTGACAGGAACTGTGTTCGAGC TGCGAGTGTCGCCGTTCGAAACTGTGATTTCTGTCAAGGCCAAAATACAGAGATTGGAAGGTATCCCCAT CTCCCAGCAACATCTCATTTGGAGGTCTGTAGAGCTTGAGGATGATTACTGTTTGCAGGACTATGGAATT CCACCATCGGCATCTCTGAAGTTGGTCTTGGCAATGAGGGGAGGTCCTATCAATACTCGAAGAATTCCGA TGGAAGATCCTGCTATCCGGGAGATGGCGGAATACATGGAGGCCAACAAAGAGGAGATTTGGGAGAAGTT GCCAGGCAACCGCCAGGTCACCCTCCTCGTCTTCCGGGAAGGAGACCAGCTCAATTTCTTCCGTGTCGTG GACCGGGGAGACGGGACGCTGACCCCGCTCTCGGAGTCACTAAGTGGTGCTTCTGTGTACAACGTTGGAG AGGAGGAGGATGAGGAGAAGAAGAACCCGAACCCGAACCCGCCACCGGAATATCCAACGGAGGAGAACGA CCTCACCATGGGAAAGATGAAACTTCTTAGAGCGAAGATGGAAAATTTATCCGTTGGCAAAAAGAAAACA ACAAAGACAGCAAGACCACCAAGCAGTAGTAGACCCAAGAGTTCAGGACAGAGGAGAATCTTCTCAGCTA AGAAAGGAAGCAAGTCCCTCAACAAGACCAGCCCCCTTCCACCCGTAGGAACTACAATACTACCACCTGT AGGGGGCGCTATGGTTTCTACCGGTGACAGTCATGAGAAATTGCCTAGCACCCGGACACCTCGCATTGGA TCGTCCGCCAAGGGTCTAGGCATGAGGACACGGACAAAACCTGAAATTGTGCCCAAAGCGAGGGCAGCAG ACATTACGCAAATTGGTGCTACGACAAACCCAGTGGCTATGTCGGCCGGTATGAGCAGCCGCAGCAAGAG CCGAACATTGAGACTCAGTAGTAGCAAAGAAAGCAGGCATAGCCCCGTCCCACCGCCGTCATCGTCGCAA CGTGCCCTTGAGAACCTCACCGGTGCCAATTTGCATCACTCCTTCCGAAGTCGGACAAACGCATACCCAC ACCCCCCTTCCACGCAGAGTTCCTTCATCCAGGACCTCCGGCCGACCACTTCCTCCAATCTTGCCGAAGC AGCCCAGGTCGCGGCCGACGCCAGCCGCGGCCCGGAACGCATGAACCTAAAGACTGCCGATGCCCGCATG GTGACCCAACTCGTAAATCAAGCTAATCGCGAAGGCAAGATTAACAATATTGTGAGGTCGGGACACCGCG AGAGCTCGCATACGGGGAAGCGCAGCGGACATTCACGAGTTACTTCGGGTAGCATGACGCTATCTCAAGC TCTCAATTCCAGCAATGGACTCACAAATGCTATTAGTGAAGACAGGATAAGAACGCCAGATGCCAGGAAA GCTCTGATTTCTGCTCACAGTATACGAGGGAGGTTATCCGGCAGCAAGGAAGGCAGATTATTAACATCTC CAGCTCATCGCCTGCCTCCAGTCACCAAGCCAGCTATCGGCTCCAAGAAGAAGGCGAGTAAGAGATGCTT CATGTGCAACAAGAAAACCGGCCTTGCCACCAGTTATGCATGCAGGTGCAATCACAACTTCTGTGCCAGC CATCGCTACGCCGAAGCCCACAACTGCGAGTACGATTACAAGACGGAGGGCAGGAAACTCCTGGAGCAGA GCAACCCTCTCGTCAGTGCACCAAAGCTACCCAAGATTTAACATTAAGCCATGTATTTTCAAACGTAATG TGTGTTATTACCTCGTGTTAAACAATATGACGATTCTTTCTGAAGAGAGACTATGTAAGGTACAAGCATT TCGAATCATTTACGATGGAAAGAAAACAGCATTAATTGTGTACACTGCAAATAAGATTGCTATTTCTAAA ATAACGTTAATTATTAACTTCAAGCATTGTTAATCACTAGGATCAGATGGATACAGCATGAATTGTGCAC ATAGTGCATTCAGAAGTATTGGGAATAACTTTAATCCTGTGTGTGTTCACACTCGTACACTCTTACAAAT TTATCACTTAAAGCAGAAAGCATGAGTAGTTAACATGGAATGGATATGAGCTTATCTTATTCTGAACATT AATATACATACTACATGTGTATAATCATATACATATCCAGTTTATGTCGTCATCAATGACGGTCATTCAC ATTGCATGCTAAAATGCACCTATTAACCTTTCACTCTGAGTCCTGTTCTAAGGACTTTATCGATTTATAC AAAGTATACTATTTATCATACTGATGGAGTAGATCAAAAAGTACTACCAGTATATCGTTGTACCTCTTAT ATATATTATCTGGGATTTTTAAATATCAGTTCAAGCCCTATGCTTAATTATGCATAGTCAAAGCATTTTG ATGAACAAAGTGAACTACATGTTCAATACGTTCAGCTATTTTGAATTAACATTGTTTTAATTCTTATAAA TCTACATTATGCATTTAATGTAGTGATTGAATACTAGAAATACATGTGCACAATTTTGTGTCTGCATTCA TGAAAGATAACCTTTGAAAACACAAATTGTATTGACATCGGAGCTTTCTGAAGTGTTTGAATGCTGCAAA TGTCGGCCTTTATACCAATATTGGACATTGCTGAGTTTTATGATGTTTACGTTAAAAAAAGAATAACAGG ATATTACTGCATTTGCTACATACCAATGAAAAAGGTTCACTAATAATAAGAAACACACGCTTATTAAAGA GTTTACTTAAAGTGGGATAATTTACAAGATATGAAAACAAAACTTACTAAAGAAAGTTAGTTTAAGATAT TGTACATTATTCTGACAAAAGGAAAAGTACTTTAATAAAAAATATATGTGAATTATATATAAAAGTGAAT CTTAAAAAAATATGTATAGTTCAAAAGGATTGCAACTGCTCTATTCTGTGCTACTTGGGGTTTTGTGTTG TTCATTGTTTGTTTTTGCCTCTACTTTGGTGAAAAAGAAATGCAAACTTGCAGATGAGCAATTTGTAGGC AAAGTGAAAAAAATGGGTGAGAATGTGGTGTTTGGAAACGTTCCTTCCAAGTCTCGCTTCTTTTCTGTCC ATACATCTGAGCTTGAATTTATTATGACTATTCATGAAGTACGGGGCACAACCTCTTTTACAATCCATTA TATATTTCATCCCTTTTGAAAATTAGACCCTATTTTCTTTAGGAAATTGATGCCACACCATAATGTTCAT CTGTACTAAAAGTTAATGAAATATTACTGAACAGACTTTCAGATCACCTTATATATACAGGTTGAATTGA ATGACTCTTACCATTAAAATATTTCTAAAATTTATTTAGAATTTATGATTAGCCTGAAATATAGCCCTTA GTCTTACCTGTTAACATGATTATATTGAAATTTATTGAAGATAGCGCATTTACTAAAGCTTTGTTGCATT ACGATTTCCTTCCAATTTTTTTGGAATTGCAGTAATTCTAAATACATGGAATGAAACAGATGTTAGCAAT TTCCGCGTAACGTATTAGAATTATCATAACAGTTATTAGCCATGCTGTCAGGAAATCTTTAACCTAGAAT TCCAGGTTCATTTGTTTTCTTTGTAAAAATAAATTCTTCCATTAACGTATGACAATGATGTCTCATAAAA ACGTATAGGCAAAGTCATAACATAATAATATTATGTTATTATGTTATTATTCTGTTTCAGTAAAGTACTA GCTTTTCCGATTGTTCTAAGATGTGATCTTGCTGAGCGTCAAAATGTAGCATGTGCCTTTTTTGTGTGTA TTTGTTGTGTTTTTGTTTTTTTAAACCCTTGAGTGGGAAGTAACTGTGTTAGCAGCTTGTGCATTTAGTT GCAGTGTAATCTGGAGCTGAAGTTGCATGTTCCTTCCTATGATATTATCTTTTAAAGGTTCCAATTAACT TGATTATTTTCGAGAAAATGAAATGTAAATGTTTGCACTGATGTTGGCAAACTAGACCTTTAAGCAAAGT CATAGTCCACCCTGCTGTTACATGTTTGTTCATGATCAATGTATGTAAACTTCAACCACAGGAAAAAAAC AAAAAAACTTTCAAACATCACATAGTACCTCTAAGAAAAATGCTTATATTTAACCATTTAAGGAGATATT TTCATGCAGCTTTAAATCGTATCATATACTTTATTTAAGAGAATGCAGCTATGATGATTTGTAAGCAAGA TAAATATTTTCTGTCTGAAGTGGAGCCCTTTCCCATTGTTACAAAAATCTAAACTTATTTGGTGTTGTTT CAGATGTATCAAAGGAATATTGTATAAACAATTGATTTGACATGCAAAAAGGAAACACAGGTCCTGCATG CAGTACACAATTTATAGGGGTTGTGCATATTTATATCACTTATGTATGCAAATCAGAGGCAATGGGAACA TATATGTCTAGCAGTCAGTAAGCCTCTCTCTATGAATGTATGCTTCATATATTTCTTTTGTGATTAGTTC ATTTGCTATGATGGCAAAAGGAAATGTAAATGAAAAATTAAGTGCAATACGAAAAAAAGAAATTTGAGAT ATTATCTCAAAGTAGATGAAATAATGTACTGAAAATCTATCAGTACAATTTGGGTGTGAGATGTGATATA CAATCATGTAAAATAGAGAATTTATTATTTCTATTTTTCTCTTCAATCCGATAATTTTGTTTTATCTGGT TTGATTTTTTTTCTCTTGACTGTGTGGGATAACTTTAGCTCAGTTGAAAACACAAAAATAGTTTGTGACC ATTTTTTGCCTTATGCATTTTTCCTGGTTTTCAACTATGCAGACTATTAAAAAGAAGTGGCGTGTCTTAA GTCAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
