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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_041597009.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121406007 (LOC121406007), mRNA AGGAGGTGGCTTAAGATAATTATCTCTTGCCGTACTCATGTCACTTTCTTAGAGTAGGCTACATTCATGA TTACGAGAGAGGGTCATTCGTGCATTCATTCGATGTCATGGCTGTGACGAAATAAAACAGAACCTTTTTT CATAGTTTTGTAATTTTTGTTTACTTGGACTCCCCGCGAGGAATGGTACCGATGTGTTGTGTTCATTTCT GGACAACTATCTAGCTAGCAGGTAGAACATACTCTGTTTGTCTTCACCATGTTCATGGAGTTTGTGAACT TCTGACTTTCTTCAAGAATGAAGAGCTATTCCCTGTCTTCTCTTAGATCTTGAAACTTAGAACGAGATAT TTCAGATGACACTGGAACATTGACTGAAAGCTGTCATTTGTCAGAGTTCTATTTCGCTCTTGTCCTATAA AATCAGAACAAGGTTATTTTTGTAAACGAAAACTTGGGGAATTGAATACGATGAGTATTCAGAGCGAGTC TGTAGTTTTGCCGGCTGAGTTACATACATGTGGGGATCATAGAGGATATTATGGTAGCTGCAGGTGTGAT GTAAACACTACAGTTATCTCATCTGACCATCCTTTTGAATATCTCTCGCTTGCATCAAGGTCAAGTGTGA ATAATGACCAAGGAATCGTCAGTAAATTCGAGAGTGGAACTTTTGCTGAACATTTCGGCAGCGTTTCGTT AACATCAATGCCACATCATCAAGGTGATCGCCCTCACCATCGTCTTCCTCGTCAAGTTTATTCTGACTGG AAGTTTAACAACGAGTCGAGATCGACTGGGGCTAGTCAAGAATGCCCGAATGACGTGTTCGAATGCAGTG CGATGATGGATAGCGAGTCGTCCAGCAGCCCGGCATCGTCAACCAGTCCAGGGTCCCTCGCGCCGCATCG GAACAGTCCTCTTGGTGCGCACACCATTTCCCATCTCGAAGTCCTATCAAGCCACCACCACCCTCGGCAA CAACCACAACAGAAACAACAGCAGCAACAACAAATCTGTGTCATGAATACCCAACAAGCCGCCAACCACC ACCATCACCATAATAACAATCACCATCAACATCAACCTCATTTTCAACGGGGCCCGAAGCGCCGAGCCGT CGACAACCAACCGGTGGACGACGCCGGCGTTGGCAACCGTAAGGAAAGGCGACGAACGCAGAGCATCAAC ACTGCGTTTGCCGAACTTCGAGATTGCATCCCGAATGTTCCCGCCGACACCAAACTCTCTAAAATCAAAA CCCTCCGTTTAGCGACCAGTTACATCGCTTATCTGACTGATATGGTTTCTAAAGATGATAATATGAATGG TGATATGGAGTCTACTACTACCATTAGTGGAATGATGCTCGACAATATCGGAGACGTGGGGTCCGCTATG CCGATGATCCGGCAGGACTTCTCACTGACCTGCCGCTCAATCATAAAGGATGCCATCAAAAATGAGAGTG CTGTGAGAAATGACTGCGAGGCTAAAAGGAAGCGAAATCGAACAGGCTGGCCCGAGCATGTGTGGGCTCT GGAACTTCAACATTGATCGAAACCAAACCTGCAAGGGCCACATAATAATTATAATAACATTCTACACGGT TTCACCATGATTTGTGATTACCTGTGTGTTAAATGGCTTTCATCATGGGCGACAATATCTTCATCATTAC CATGATTACACGCATTATAACTAAATAGAATTTTAAATGAATAAAGAAGGAGAAAGAAGGGAGAGAATGT GCATAACGCTGGAGATCAGGCCTGAAACGTTATGAGACACGGCATGGCAGCTGTGACTTCATTGCCCTTC CCTAACTTTTCATGTAAAGATAATGATAAACTCTCATGTATGTGGGAAGATCACAGGAAGACAACGGGAA GACATAAGGACAACGGGAAGACAAAAGGACAACGGGAGTACAAGACATGATATCAAATGCTTTCGAGTAA TGCTTGCCCCCAGAGAATCGGCGGACCACGGACATCGTCATGATCGGAGGCTCGCCACTTTCGCCGCGGA CGCTTTGATCAAGGAATTGCTTTGAGTCTACTACCTTGCTTTGACGTTGAAGTGTTCGGGTATCCTCATG ATTTGTTTCCTTTCTTAAAAAAAATCTGTAAAAATAGTTCACTTCCTTTTTATTGTTTACACTTTACAAT TATGATATCGCAAAGTGGAACATTGGCAGATTGGCTCAAAGAAGAGTCGAAAATAAATAAACGAATTGTT TGCGGTTGCCACAATAATGATCATGATGATGGCGCATGGATCTATTCTCGACATCTATCTCGACCATGAT CACAGCCTTTCGTGGTATTTTGCTCGCGCCATTTACCAGCCTCAGTCGAAAGGGGTGTGGTCACTTGACT TTCTATTTTTATCATGATTTTCTCGTTATTACCGCCACATCTTTGTAACAGATAGGCAAGGGATCTATCT GAACATTATAAATTTTGTTTGTTATTTTTAATTTTTAAAGTTTGTTTTTAAATTTTTGTAAACAAAGAGT CAATCATTATCATGATTCTAATATTCAGATTGCGATAATAGTATAACATAATCATATTTTTTTGTTTGCA ATTTAAGTCTCAGAATCAGACAATAGTCAAGAAATCAAAATGTTACTTAAACATGCAATAAGGGATGATA CATAATGTGCCCGCTTTAAAAAGACTCCTGTTT
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
