Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041602888.1 PREDICTED: Lytechinus variegatus E3 ubiquitin-protein ligase arkadia-C-like (LOC121410657), transcript variant X1, mRNA CCAGTTAATGCCAAATAAATAAATGTTGGCTAGGTATCTTCCGTTCTGACGTTACGTTACCGCCAGACAC GGCGCAAACATCTCAAAAAGAGTGATGAAATAGACTCCTAAATTTTCAGAAGGTTCTCTGGGTGTAAACA CAATACAGACCCTGTGCTAAACTATGGAACAGGAGTTGATGAGCAAAGGCCATGTGACCAATGAAGCCTT GTGGCCAGATTCAACATCTTCTAGTCAAAATCAGGTCAGTAGAGCTGGCTGTGAGTCAGTGCATGAGGCA GCCGATCTTCCTGACCAATGCTCAACTATAGATGATGAACCTTCCTCTCATATGGACTTTATGCCCTCAG ATCCACACACTCCTTCCCCTGTACAAATCCAAGGAGAGCAACTTGTCAATGAGCCACTGGTTTCTCTTGG AAACGAACCTTGTGTAGGACTGTTCATCCCACCTAATGAAGATGAAGTTGACGTTGTATCAGTTGATGGT AATCGCAACAACCGTTCTCCTTTCCACCTTCTTGAAATAGAGCAAGCAGCAGAGAATGCCATTACAAGGC ATATCTTCAGACAGCCTGCACAAACACCTGTGGAATTCGATCCAGTTCGTGAAACAAGTCAAGACACCAT CCCTGATCCCATGATGGCAACCCAGGCACAGGATTTAGACTATAACATGATGTCAATGTCGACATCACCT CAAAATCCTTTTCAAAGTGAACCACTCTTTTCAGAGATTCTCAGCGATACCAATGGATTAGAGGACTTTG GTGGTGTGCAGCACCAATCTATGAATACTAATATTCTTCAGTGTTCCGAAGGAGAGAGTAGAAGAACAGA AGGATGTAAGAACAATGGCAGAGACTCTGCATTGCATGTATCTAATGAACTTGAGGAAGAAAGTGCTACA AGGAGGAGAAAACATGGCAATGTAAATAAAATATTGAAGAAAGATACGATGTGGGCAATAAATCCTGGTA AGCGAGATAGAACACCTCCAGTTGTAGAAGAATCACTTCTTCATCAATCAGGTAATGGTGAGTTAGTATC GGGGTATCATGCTCTATCTCCATCTTTCACCGTAAGTCAGAACTCTGCATTTGAAGCTCGTGCTGCACAT TCCTTCTCTGATGCAGATAGTACTTCATCTGCTTTAGCCAGTGAGACCGGCGATGGAAGTGTTACTAGAC AACCCATGGGTGAGGTCAAGATTCCATGTAAGATCTCTTTTGAGGGTCGGGAACTCGGTTGCTTAGATAC ATCTGATGTGGAATCACAGTTCTCCTTCAGCAGTCATGGTGCCACAATAGGATCAGACACTGTGCGATCC ATGTCTCGTGCTGGTGATGTGACCACCATTGTGGACTCAAGCAGTGAGGAAGAATCTGATGTGGACATTG TGACTCTTGATGATTCCATGAACTGCACAGATTCAAGTGGTTATGGTTATGGAAGTACAGCAATGTCAGA CTTTGATGTCATTGACCCCAATCTACCAAGTACAAGTGGCTTGCCATTGACACCAAGCAGACAAGGAAAA ACAAAGAAGAGAAATTGGTGGGAAGCAGAGACCAGTTCTGATGCGGGTAAATCTGATAAAGCTGGACCAT CCAGACCAAGATCAGGAGGTTCTGGTCAAGGCAAAAGTCCAGTTGTAGTTGAACTTCTTTCTTTGTCCAG TGATAGCAGTAGTGATGACGAAGTGGAGGTCATTGACCTCAGGAAGGATTACTCTATGTACAAGAGCAAC CCAAATCAGCCCCACAGTAGAGTGAAATCTCGCAAGAAAGAATCAAGATCACCAGTCATTGTTGACCTTA CTGAATCTGATGGGGAGATTGAAACAAGCAGCAGTTCAACTGAAGCCCACCCTTCCACATCTTCCTCTGG CAAGCATCTACCGAGTGGAATACACTGTCAAGCAGCTCAAGACACCTCTAGGAATGATGATGCTCAACGT GTAATCTCACCCATTTCACCCCTCATGAATACATATTCGAATGGTTCCCATGACAACCATTCTACCGCTG CACCAGGATCGGCATCTTCATCGTCTCTGTTGGCAAGGAATTGCAGGGGATGCCACAGCTCAAGGAGACA CCATCACCATCACCATGCAGTCAGCAGGCCTTCCTGCCAGCATCCTGGTATGTCATGTAGCAGGGTCAAC CAACAAGGTCAAGCAAAGGAAAGCATTGGATGCCTCAGATCAGCATTCTCTTCCACCAGACAATCCTGGG AACAACCTGAAACTGGAGAGACAACACATAATGCTTCAGAGGAGGCTCATGTATCATCCAGTAGCCAAGA TCAAAGTGAAACCCACAGACAGTCTTCAAGCTCCTCATCTTCCTCTTCCTCCAACTCCCTCCTCCAGCGT GCTCTGGGTTATGTTCCTCTGTTTGAGCGGGGATCGGACACCAGTGGTGCTACGTCGGGGACGACAGCCC AGTCCCAAGCCCAGGACTCCCAGCCTCCTGCGGTATCGGCTCCATCATCCACGGCTGCTTCCATACTGCT GAGATCACAGTATATGGATGGTCGTCATATGATGAGAGATGGGGGTAGTAGGTTCCAGGCTAGGTCAGGA CTCTTTAGCTGCTCTCTTCATGGACCAGGCAGACAGCATGTTGTCTTGCCAAATAGAGGTGACAAGAGAG GACACGGCAGTAGAGTACATGGAAGCCAACAGATTGGACACCAGCATCATCACCACTTCCATCCACATCA TGTTCATCCTTCTCACTCCTCTTCGTCCTCTTCCTTAACATCAAATTCCTCATCTTCATCATCAGCTCTC GGACAGCAGCATGCCTCTGGTCCTGCGAGACCAATACCACACAATCCTTCACACTCTATACAACAACAGC AGCAGCAGCAGCAACAACAACTGAATCAACAACAGCAGCAACAAGCACAGCATCAGCAACATCCAAGTGT CGGTTCACAGGTTGCGAGTCCTGCTTCTCCTCCGCCAGCACCCTTTCATATTCCTGGTACCATGCCAGGT ACAAGCCATGTTCAGCACCCTAGACCACACCCCCTTCAACTGGTAGCTGAGATCCAGCTACCTCAACAGA CCCCATCGGCATCTGTTACCCACCAGCAGCTTAGACAGAGACAGCAGTACTTGGTGGAGTTACAACGTAG GTGTCTACAGGTCCAGCCAGTCCAACAAGTGGCACACAGAGCATACCCACGCACCAGGCCTCGCATGCCG GAATTAAGCTTTCCTCCAGATGTGTTGCCAAGACATGTTCATTGTCAGCAACAGCAGCAGCAACAACAAC AGCAGCAGCAACAACAGCAGCAGCAACAGAATGAATCTGACCAAACTGCGCAGTCGCAATTGCCTCCAGA GCAGTCTCGTCCCCGCCCCGAACAGATGAATCAGCAACGGCCAACGTTGGGTACAACAAGGGAGCTTCCA AGACCATTTTGTCATCCACCACCAACAGCAAGGCAACCAGTTCTTCATTCACAAAGGGAGACTGAGCTTG GTACAGGAGTGGGCCCAGATGGCAGGCAGCATCAACATCGTCATTTACATCATCACCTTCACCACTATCA TCACAATGCACCCCACCCTCACCTTCATACACCAAACATGTCTGGTACTACAGTTGCTCCCCTTATATCC AACTTGCTTGTACCTGATATTCCCCCTATCCATACTGGTCATCCGTTCTATGCCCAAGCTCATCCACTCT CTGTTATGAGGGCTCTGAGGGTTAGCCCTATGTATGAGGAGTTGGTTCAATTAGGGGAACACCTTGGCCA GGTGAACAGAGGAGCTTCCAGGAGCATCATAGAGAGAAATACCTTACCACATAAATATAAGGCCCGTCAT CCTAAGGAGAGTGACAGTAGTCAGGAAACGGGTGAAGTGGAGGGAGCAGCAAAGATCTCAGATGATGATA TGGAGAAATGTACCATATGTTTATCGTTCTTTGAAGATGAAGAAGAAGTCAGACGGCTTCCTTGTATGCA TCTTTTCCATGAGGAATGCGTGGATCAATGGCTGGTTACCAACAAACGCTGTCCTATCTGTCGAGTAGAC ATTGAGACTAGGATGCACAAGGAAGTCTGATAGTTAGGGCTCTTGTAACTCTAGGAAGCAGAAGAATCTC TTGTTACAGGTGCTCTGTATGATGCCAGCTATATAAATCACCGATGGGAAGTGATGTTGAAGTATCATGA AAAGAACCATCTTGCACTATTTTGTGTATATCTGACTTTGACAGCTGTATCAGAGACTGAAATGGGTTTA TATTTATTTACTAATCCTGTGGATATCCATTCTTATTATTTTTAGAATAGGGTTCATGATTTTTTATTGA TTTTACTTCATTTCATTTACATCTCTTATAAATCCTCTTTCTAAAGCTAAGATATTACATAATTTTAATT TTTTTTAATTTTTAGAAAAAAATCATAACTGGACCCTGAGCAAACTCTTTGAAATCCTTAATTACCTAGT GTTTTTTTAAAACAAATTCACTGCCATATCTTCATATAAAAGTATAACTTATGTTCTGTATAATTTGCTT ACTGTATATAATGAAGTTGTATTTTTTCCATTCTACCTTATCCCCAATTATTTACAAATCCATTTACTTT GATTTTGTGAACTGATCTTGTTAATGGCTTTATCATTTATATCATATTCACAGGAGATACAAGTTTGTAA ATATTCATGTTTAGTTAGTTACAGTACTCAATAAAAGTTTATAAAATGTAGGATATGACAGGTTATCACC GAGGGAAAAATGGAAGTGTATATTTATATTTTGGAATTGTTTGGTTTGATCATTATGATTTCATTAACAT AATTCATGTAACATATGTGCATGCTGTCATATAGGCTTATTATGTCTGTCTGAATTATTGATTATGTAAA GAATTAAAAGATGTTTTTGCTTGATCTTTTATAAAATAATATATACATGTATATCAGGAAGATTTCATTC CAAATTTTGTAATCTTCTTTACATCTGCAAAGAGATTCAACATTATGATGACTAGAAGCAAATATGTTAG CTAGTCTCCGTTTCCTGCATTGCACTTTTGAATTATATTATTTGAAGGTCTGTTGAAGAATAATGGTATT GCAATGTCCCATAGACACTGGGAATTAAGTGAAATATGCTCACTCAACTAGATGTATTGTGATTTTGTTT TATAAGTGGGGCTTGTGGCTCATGGATTGATTGTTAAACTCTGTCAATTGTAGAAAATATCACCACCACC AAGATGAAATATAGAGTGCAATAGTTATTATCTTTTGATTATTTTTAGTTAATATTTTTTAAAATAGGTC TTGGTAAACACATAGAATGCATAGCCATTGCTTATCATTTCAGAGTCTGTCAATTACCCTTACTTTACCA GAGAAAGTCCTGATTTATGGATAAGATAAATTTTTAAATTTGATAACCTCTTTTCCTTCAAATTTGTTTT TTTTTCTCGTCAAAATCTCTCTTTAACTTGTTGAAAAGTCCTCATTTATGGAGCATTCTCTATTTTTATT TCCCCAATTCTTGGCCTTCTGTGGAGCATTTAATCAATGTTTATCAGTTGACACAAGTTGTCAGATGTGA AAATTAGTCATGATTAGCTGAAAAGTATAGGTGTTTGACTGTTACTATGGTAACTGTCAAATGACAGACT TTGTGGGAGAAAAAATCCAACAAGTCATTTCATGAACCTTCCCCAAATTAGACATTCATGGATTTTCAAA ATGATTTTTTTTGTGTGTGAAACCATTAATGATAGGAAAAGAATACTTTGTAACTGTCCTAATTTGCTTA AATCCAGTGCCATTGTAACTTTTAATTCATTTGGAAAGCTGAATCATTTATATCACTTGTGGGCGTTTAT CACATAAGAAAATCTCAAGATGTGTAGTAGAAGGAAAATGTAAGTCCTCTCTGGAACCACTAGTCGCCAT CAGTTTGAAATATCTCTTAGAGGATGTGTCATAAACTTATGAGGTCTTTTGTGTAGGTCGTTAGAAACTA GTGGGCCATTTCACTATTAAAGTCATGCTTGAGTACCAACTCCAACATGGTATTTAACACTAAATCTCAT TGGTGATTACGCAGTAATAATCTTATGGTCACCAAGCACAATCTGATGATTATGAAGTGCAATCTGACCA GTGAGGTGCTGTGTTGTATACCACACAAATTAATCAATTTGTGATTTTTAAGTTGTACATAACTCTTTGT GAAATATCCCTAGCTCCCAATGAAAGTACTTAATACAGTTCAAGAACATGGGGCTACATCTTGTCAGGTT TTTTTTTCTCTGTAATGTCAAACATAACTGCATTTGTTTGAAATAGAGTTTTAGTTTTTTTTTCTTAAAA GTGATTTACAAATTGCTGCTCTAAGATATCGTCAAATTGATTATTTTTTTTTTAAACAGAGGTAATAAAC CCCAAGTTTTCCCATATAAAGCAGATAAGTCTTTACAATGAATTGAATGGAAAATGAGTAATGCTTTTAA TACCAGTGCAAAAGGACAACTTATAAGCAATCCAAGTCTTACCAATAACAGTTCATTGGAATTATCAAGG TAACTGTCACAGCAAAATTGTAATAACATTAATTTATTTGGGAGTTGTGAAATACTAGGGATCATTAATT TTGGTCACAATTTGTACAATGGTTATAAGACATTTTGAAATACTGGGAGATTTACAATGATGACAAATTT ATTGGAAATTCCCTGAATAGTGGTTATTGAGGTTCACTAGTATCTATTGAAATCAATAAAAGTACAGAAA TTACATAACAGAAGTTGTCACTTGGCAAAAATGATCAACCAACCTTACTGAAATTGTATACTCGCTACCC TCATTATATGAATTTGAATCGACTAGATCTGTAAAAAAAAATATATAGATTTATATGAATAAAACAATAC TGATCCATGTTTATAATTAATTGTATTTCATTGAAGATATAGAAATCAATAGTATATCAGTTTGAATTAT TTATGCTATGTTGTGATATGACTAGATGGTTGAAATACAATATGGTATGATGGTATAAAATTCCCCTCTG CCAAATAAAATCCCCCACATTTAAGAACGTATTAAGTTCATTATCTTTTTAGTTTTGTGAGAAAATACTA GTCCTAGTACTTGTAACTTCTTCCAATTTATTGCTCGTGATATCAATTTGTAATATTTTGTGAATATTCA CCCTCTAATAAGAAATTGCAAATGAATATTATGAATACAACCAGGTAGTGCACAGCACATATAATGGACT CTAAACCAAAGTATGCATGTATAAGAAGACAGTATTACGGTAAGAATGTAAGTCACTTAGAATTTAATTC ATTAATTTCGCTCATTCTCTATACATTTCATGTATTTTTTCCATACAGTATACATCACATTTATTTCAAC ATTAATTCACTGTTTGTGTGAAGTGACATCCCCACTCTTTCTTGGTGAAAAGTTACAGGTAAATGCATTT TTAAAAATCTTAATAGCATTGTAGAAATGTGGTGTGAATCACCTTTTCTGTTCATTAATTTCATCCAATT AGGAACAACATATCTAACTGATGTTTGAATTTTTATTTAATACAAACACCACACATAAGATCAAGTATTT ACCCTATACACACAAAGATGAGTGTTGAAGAAGATAGTATGGTTTTCCCATTTTTATTCCATCATAATTC TATTTCTTTGTCAAAGTTAGAATGTGCAAAATGTATTATTCTACCCGCACAATCATGGCTTGAGTACATG AACATGAATCATTGGGATTACAGAAATGAAAGAATAAATTAGTCATTAAATAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds