Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT103492.1 TSA: Strongylocentrotus purpuratus WHL22.143762.0 mRNA sequence CGTAACCAACACCAACGCCAACGGGTCATCGACTGGCCGGGATTCGGGAGTTCGGTCGAAAAATTTTAAG AGTTCATACCAGAGGTCTGGTAGCTATGACAAGGTGAGACGCTTGGTAAAGGAAGAAGGAAGGATGGCTC GTAACCTAGTCACATGGAATGTGCCTGTCGATAGTGATGACAGTGATGATGATGAATCCAAGCAACGAAG GAGTCATAAACAGCACCCTCTTGTGATGGGGAAAGCTCGGAAGAAGTCCCAGTCAATGCCGTCCCTAGAA AGCCCTCGAGAACACAAGTCTAGCAGTGGAGATACACAGGAGAAAGGAAGCCTCACTCCTGGCCGCAAGA AGGCCATTGCGAAGAAAGCAGACCTGAGAGCTCGATACTGGGCATTTCTCTTCGACAACCTCCAGAGGGC AGTAGATGAAATCTACCAGACGTGCGAAGTGGATGAAAGCATTATGGAGTGCAAGGAAGTGATCATGATC CTTAAGAGTGCCACTCAGGATTTCGAGTCGCTCATCAAGAGGATTACTGTCCAGAAAGACTTTGAGAATG CTGATGCTGAAAACAGACCGACTTCCATCGTATGGGAGGTCAGGAAGTCATCCTCATCCCCAGCCAAGCT AAGATCACCTAGCTGGCCTGCTGAGGCTCGGCTTCATTCACCTAGACGGCCTACATCCCTGGCATGGGAG GTGCGTAAGACGTCCCCCGGACACGCCCTTGGTAGCCCCACCCCTGATGGGTACAGAAACACCCCCAGTC CGGTGAACAGGACATTGAACTTTGGCACAACAGCTGCTGCACAAGGGTCTGGAAAAGCAAGCCCTGTTCC AGTGGCTTCCATGGGCACTAGCTGGGCTGACAGAGTAAAGGGCAAGAAACCCATCAGACCTATCCCACAG TCTCCCATCAAAGAGGAACCAGCCAAGCAAACTCCCCATCCTCCTCCTCCTGCTCCTCCTTCTGCTCCTC CTTCATCCCAAGATGCTCAGAATGAGACAAGAGTACCCAGTCTAGATGGGACACACAGCGAAGATGCTGA TGACGAGGGCTGGGAGACAGTGCAACGCAGCAAGCCGAACCGTTCCCGCCCCTCCTCCGCCAAACACGCT TCATCCTCCAACAACAATAGCCGGCACCACCCTGCCGGCACCACCTCTGCAAACAAAGCCCCTGCCCCTC CTGGTACACACTCGGTGCAGACCAGCACTGCGCCAGTGTCCAGTAAACCCCCACTGCCTGCTCACTCCAA ACCCAGGGAGAGGGCTGACAGCGAGAAAGAAAACAGACCAGACCATGTTGACCAGAGGAATCTTGCTAGC GGTGGAGGAGTCAACCGACAACTGATGCAGGAGAAACAGAACGTCTCATCACCAGCTGTAATGATCTTGG ATATAAAGGAAGAGGATCCCTCTATCATTAGAGCATCATCAACGCGCAAAGGACTAGATTTCTCCTCTGA TGAAGAGCATGGAGATGATGATAATGAAGAGGTATTAGCTACAAGACTTGATGATGTGGAGACTGATCTA GATGAGGAAGAAACACTGACCAATGAGCTGGCCAAGTGCCAGGAGGAGGCCCTCGCTCGGGCCATCGCTG AGGAAGAGAGCCTCAACAAGGAGATTCAGGAAGAGGAGCAGACAGAGATCGTCGTGGAAACGGATGATGC AGAGAGTGACCTAGGGAATACAATGAGTTCATTGGAGTGTTCCCAGCAAGCCTCCGACTGGGCGGACATG GCATTGGACTTTGAACAGCGAGAGAGCGAGGGTGCATCTTGGAATGAGCTGGTGAATATAGCCGAGAACG TGGAGTTGGCCAGGACACCAGGATATGCTCTGCACATGCATGAGAAACTCTCCTCGCCTTCAAGGAAAAG GACGAGAGAAGAATCTCAGAAGCGTCATGAGGAGAGACAGAGGAAGGCTCAAAGCAAGAGGGAACAGCTT TCAGAGGCTAAGTCTACTAGACTTACAGTGCTTCATGAAAAGGTTGAAGAGGTGGTGGAATGGAAAGACG AACTGAACAGACAGAAGAAGAAACTTCTTGAAGAGAAGCAGAAGAGAGCCGAGGAGAAGAGATTGATGCA GCTACAAGCCGTCATCAGGAAGGCACAAGATGAGGAAGCAAAGGCCAATGAGATAGCGTTCATCAATTCC TTGGAGGCACAGAACAAGAAACATGACATCATGGCTAGGCATCAGGGCCATGAGGCTCGTTACCATGACA TCCTGGAGGAGAGACAGAGGAAGAATGAGGAGAAGGCTGCCAAGGAAGAAGCTGTACAGGAAAGAAGAAA GGCTCTTGAAGGCGAGAGGATAGCTCGGCTGGAGGCAATGAAGAAATATCGCCGTGAGCAGGAGGAGAAG ATGAATGCTTTGAAGGAGCAAAGAGAACAAGCCAGGGAGAGTACAGTCAAGGAAAAGGCAAAGGAACGCG AGCAGCGTCTATCAGCACTAACGGCTGCTCAAAATGCTAAAGAGGAAGAGATTCAAAAGAAAATACAACA AAAGCATGATGAGAGTCAGAAACGTCACAATCAACAGATTGAACAGAAGAGAGAGAAGGCCATTGAACTG AGTACCCTTAGACATTATCGTACCAGCGACTCTGCCCCTAAACAGAAACCCTACGAGAGGAAGAAGATGT GTAACTTGTGCAATGTACTGATCCCATCAGAGGTCTATCTGATGAGTCATCTGAGAGGAAAGAAACACAG AGAGAAAGTAGCAGAGAAACACACATCAGCTAGCATCAGTGAAGAGGAATTGGAAAACAATTTTGTGAAG CTTGTGGTAGAGGCTCCTGGGGACCAGTCCCACCCTGAGATCGTCGCTGAGAGGGAGAGACAGAAGGGTA GCCGCAAGAGAGCCAGGAAGCTCAGACAGAGGATGGCTAGTAAGGGCAAGGAGTATGAGAACAATCTACC TTCAAAGACACAGGGACAAGACTCACACCACAAAGCAAAGTTGCAGAAGCTTCTGAAGGATCTGAACAAG TATCTTCAAGCCCAGGACTCCTCTGGTCCTTGGGAACAAAGTAAGGTGTCTGCCATGGATAGGGCCCTAG GAGAGGTCAATCGCATTCTTGATAAAAAGGAGCAAACTGATCAAATCATGTTCAGAGCACATGGAGGGCT GTCTGTCCTCACAAGGGTTCTTATGCTAATAGATAGCGCGTCCAATGACAAACCAGCAGTTGTACCAAAG AAGACACTTTGTTCTTCTGCCGAGGTGTTCCGCCTGGCTTGCAGAAACAACTTTGACAACTGCCAGTACA CCATGTACAGCGGGAAGATGGCACCTCTTATAGACCTACTCATGCATCAACTATCTGTTCTTATACCAGA CTCGGATGATGGTCTGCATAGTCATCCTTGGGGTCCAGACTCCCTCAAACCACCCCATGACAGCGTAGCG GGCAGTCTCATGCTTCTGCTGACCAGTATACTCAACGTCCTGGTCAAGCATCGGCCGCAATCTCCATCCT CACCCGATGGCAAGCTGCCCTCATCAGCCAAGAAGAAACAGAAGGATACATTTGACCAGTGGGGCATGGA CGTTGTTAGTTACCTGGTGAGCTGCGGTGTGCTGGATAAGCTGACAGTGTACTTCAACAATGTGCGCAAT CCCATTGATCAGGAGCCACAGATAGCTGAATTCCTTCAACATGCCATGGGTTTACTGGGAGCTATGACTC GCTTCATCTCCACTACCAGCAATAGGTCAGCTGCCGGTATCTTTGGTCCCAAGAAGGACGACCCCACCCA GCTGGTAGCCACCTTTCAGGTGACCGGTCTGGGAGGCATTGTATCCCTCCTCTATGGTATCCTGCTCCAT GGGGGTGCCCCCTCCCGAGACAGCACCATGACCCCGCCCGAGATACCAGAACACACCGTCAGTGTGGTCA ACGCTGGTATCAAGATGCTGAGTAGCATCGCCACCCTGGATCTTAATGTTCTACAGACTGCCCTAGGAGC AGAGGGTACATCCCTTGAGTTCCGTCACATTGCTACCTATCTGATGTGGTACTGTAGTCATTTCACTGCC AATGAAGATCTTCTTCATGAGGTTGTTCTCATCGTGGGCTACATCACTGTGCTCAACCTAGACAACCAGA TCCTTGTCCAAACCGGCAACACCCCAACCCTTCTCCAGCAGCTGTGCAGTCTCCCATTCCAGTACTTCAG TGACCCACGCCTCATCAACGTCCTCTTCCCCACCCTCATCTCGTGTTGCTATGACAACGCAGAAAACAAG AAGATCTTGCAGCAAGAAATGAGCTGCTCGTTGCTCATGTTGTTTTTGGAGGATCGACAAAGGGACCAAA CCAAATCAAAGTTGTTGCCCTCCGCGACCAAAGCAAGAGCAGTGCATGATGGTAGTGAGAAGGATCCTTC CAGCCATGAACTAGATAAAGAGAGAGAGAAGGAAGGGACATCCAAGTTCAACCTTGAGTTTCGTTTCCCC GACAACAGTACACAAGCTGCCTTGCAGTTCTTCAAGTCTTAATGTTCAAAGCATCATCTTCGACACAGAG CTGAGGCTACAATAACTACTCGTTAGAAATGAGGTCGATAAAGTAGTTTTAAGGAAAACAAAATGTTGAA TACTATGAGTGAGCTTCGTTAGTAATCATATTTTTCATAACTGCATGGGAGCTTTTTTTTTATAAAACCC CATCTATGATCTGAATTAGCATATTGGTGATAATCTCCTCTCAATGTCTGTGTCCAGGGGACAGTAACGG TGTCACCTGTCAACCATGATTATTCAAAATGTACACTTCTCCTTGGTAACAACACTTTAAAAACAATCTT CATTACAATCTGAAACAATTAGATCTTATTTCCTCCATAAATTTGGAAGAGTGAGTTGAAATCTATTTTT TTTTTCAATTGGAATGAGGGTTCAAACCCCTGAAATAGCACATGTTTCCTTATCCTAGGAATTGTTTTAT TTGCAGTTATATCCCATGGCCTTAATATTAGATGGTTGTATCTGACTGCTTTAAAGACAATTCATTTAAT GCTGTGAACTATGAAATAGAAGTTTAGCTGAAGCCAGATTAACGATAAGTACTTTGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds