Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT096893.1 TSA: Strongylocentrotus purpuratus WHL22.760310.2 mRNA sequence AGTGAGCTGCCATATGACATCAGTATCTTGAACCGCTACCGCAAGGCCCTTGACTCTGCCGTCAAGATCG CCACCAGCTACAACGTGAAGCCGATCCCAGGCAAGACCCTCCTACTGTGCCATGTAGGCAAGTCTATGGA GAGACCATGTACCTCAGCCAAGGGACTGGGAAAGAAGAGGACTGTTTTGGAGGTGGGTGTCCTGTTGGGT CTGATGTGCAAGTATTCCTGTGAGAACTGTGACATGCTCATCTTTGGTGGCAACTCTCATCGTACCGTAG AGCTGGAGTCTGGAACCATTCTAGATAACATGGCCAGTGTCCTAGGCCAAGCTCAGGTCATGATGACCCA AGAAGAACAAGGCCAAGGACTAGATCCTACGATTCTGGGTGAAATATTGAGGGATAGAGATGAGGTAAGT CAGCAATCGAACGCCGTTCCTGGTCTCTCTTTCCTGCAGGACATTATGCCCCAAGAGAAAGAAGGCCAAG GACTAGATCCTACGATTCTGGGTGAAATGCTGAGGGATAGAGTTGAGCTGGATAATCTTGTTATTCTGAG CAACTCAGCCATGCAAGAAGGGAAGGAGGCAGACATGATAAAGGGTTTCCTAACCAAGTACCGTCGGGTT GTCAATGAGAATCTACTCTATGTCAGCGTCGACCTGAGTGGGGGAAGATGCAGCTTGTCAGCCACGCCTT CCCATCCCAATGATATCTACATTGCTGGATACAGTGACCAGATCCTAAGATTCATTGCTGAGAGAGGGGA TACTGGACAGGTCACTCATGTCCAGAACATTGACAAGGCTTACAATCTAGATGATATAAAAATCCAAACT GGAAAGAAGAAGGATCTGGTGACACCAGAGATTCCACGAGCACTACCAGCTCCTCAGCAGACTAGAAGAC ATCATACAGTGCGTGTCTTCATCTCCTCCACGTTCCGTGACATGCATGGTGAGCGTGACCTCCTGACCCG GTTCGTATTCCCAGAGCTACGAGCCAAGGTACGCACCCGCTTTGTGAACCTCTATGAAGTAGATCTACGA TGGGGAGTCAGCGAGGAGCAGACAAAACACAGCAGCTCTGTTGAGGTGTGTTTGCAGGAAGCCAATCGCT GCGACCTCTTCATTGGCATCCTGGGAGATCGCTATGGTTATGTCCCTAACGACTACCCTGACCTGAGCGA TAACGAAGACTTCAACTGGCTGTCTACTCATCCCAAGTCACGCTCCATCACTGAGCTAGAGATGTATCAC AAGGCCCTGAGACACTCTGAGGGTAGTACCAAGGCTTTTTTCTTCATCAGAAGCTCTGAATTTGTGAAGC ATGTCCCAAACAAGTTGAGAAGCCAGTTTGAAGATGAGAGTAGCCAGAGCAAGGAGAAACTAGCAAGCTT GAAGGAAACCATTCGTACCAGTGGATGTGAGGTCTTTGATGGTTACCCATGCCATTTTGGAGGAGTCGTG GAGGGTAAGCCAGTTGTAGTGAACCTTGAGGAGTTTGGTCGCTGTGTCATCAACAATGTCTGGAACCACA TCAAGCAAGCATACCCTGAAGATGGTGAGATACTTGATGAAGTGGCCCACGAGAGGGCACAGCATGACAT GTTCCTGCAGTCGCAGCTGGCCACGTTCACCGGCAGGAAGACCCAGGTCAAGCAGTGTCTGGAAGCTGTC AAGAAGGCAGAGACGGGAATCATCATGGTTACAGGCAAGCAGGGATGCGGCAAGACAGCTCTAATGGCCT CTGTTGTAGACACTCTGCAGAGCAAGTCGAGCCAGCCCATCATTGTTCACTTTGTTGGTGCCGTACCTGG ATCCAGTCATGTATCTCCACTTCTCAAGAGACTATGCAATGAGCTCGTACGTCGCTTTGGTCTGCAGAGC CAAGTCCCTCAGGAATACAAGAACCTTGTATCTGAATTCCCACGTTTCCTGGAAGAAGCAGCAGGGCATG TAGACTCCACTAATAAGCTAGTCATTGTCATCGATGGCATCAGCGGCATGGACGCGGCTCACCAGGCCCA CAACCTGGACTGGCTGCCACAGAACATTCCCCAGAATGTCCTGTTCATTGTGAGTGCGGTCATGTCATCT CCTGCCCACGCTGCTGTGGTCAGACGCCAGGCCACCATGGTAGAGCTTGGACCTCTAGATCTGATGGACA AAGCTGAGGTGGTCAGAAGAACACTGGCTGCTCATCACAAGAAACTGGATGAATCACCATTCAATAACCA GATGAAACTACTGGTATCCAAGAGAGAAGCCAACCTACCTCTCTTCTTGAAGCTAGCCTGTGAAGAGCTG CGTGTCTTTGGAGTCTTTGAAGAGGTTTCCACTCGTCTCAAGGCAATGTCACATACCATAGGCACACTAC TCCAGGAGGTATTGAAGAGACTGGAAGATGATCATGGTCTGGATATGATCAACATGGCCCTTGCACTGCT TGTCTCCACAAGAGATGGATTATACGAGGAGGATCTACATTACTTGCTAAGCCTACACCAGCAGATGAAA GATAGCAAGTACACCTACAAACAAGTGATAGGTACTGCTCTAGGCCCAGAGGTTATGCTCCCTCAGGCTG TCATGTCAAGACTAGTACGGGGGATCAGATCTCTCCTCGCACCTACTGGGGAACACAGTGACCATAGACT AAGGGTCAGTCACGGTCAGATCAGCCAGGCCATTATCCAGCGCTATATGAAGGGAGCTGCGAGTGAACTC CAGATCAGAACTCATGCCCTGCTTGCAGGTTACTTCACTCACCTATCCAGGACCAAGAACGCTGTGTCTC CGTGGTCTCCACACTACCCTCATGCTCTCTCTGAGATGCCATATCATCTGGTACAGGCCGGATTGTTTGG AGAGCTCAAGAACGTCTTGTCCGATCCATTCTACGTCCAGGCCAAGTGTGTCTCGGGGCTCACAGCTAGT CTGCTGGAAGACTTCCAGGCAAACACCTCCACCACTTCGAAGGCCATCCTACGCGAACGTGAGAAGTTCC TGACCAACCCTCTCATCGCCAGCCTACGCTCCTTCGTCTCTCGACACCTCCACATCCTGACCCTCTGCCC TGGGTTGCTATGGCAACAGGCCATGAATGAAGCAGACAGCTCGCTTGTACGTCATACTGTGCTGGAGTCT GCTGGATGCAGAGAGAAGGGTATTGTTGCGTGGAGGAACAAGAGAGAAACGGCTGACGAGTGCTCCATGA CCCTAACCGGATTCACCGATGCTGTTCTGTGTGTTGCTATAGCTCCAGGTGATCAGGTCTTTGCAGTTGG AACCAAGAATTGCCAGCTCAAACTCTTTGAGATGGATACTGGAAAGGAATTGAAGAGTTATATTGGACAT TCTGATGCTGTGACATCGTGTTGCTTTGTTGGCCGAACCCGTCTCGTCTCTGCCTCACGTGACAAAACCC TGAGTCTGTGGGATGTTGATCAAGGCTTCAGGGTCAACATTCTGAAGGGTCACAGGGGACTGGTCAGCGG GTGTATCTCTGACCCCAAGGGTGTCAACCTGGCCTCCTGCGGCTGGGATTGCCGTGTCCTCATCTGGGAT GGACGCAGCGGCAAGCAGACCACGGACATCACCGAGCCACGCCCTATCAGCTGTCTGTCCTACCACCCTG AAGGGAAGCTTCTCGTCACGGGGTCGTGGGATTCCACACTCAAGATCTGGGATACCTTCAACAAGAAGAG AGTAGCTATTCTGCGTGGTCACCATTCTTCTGTACGTGCCGTGACCTATTCACCGACTGGTCGTCACATT GCCTCGGCCTCACTAGATGGCGCTGTCAAGCTCTGGTCAGCAGACACTGGAACACAGGTCGGCAGTCTAT GCGGACATTCGCAGCCGATCAATCACATTGCCTTCTCAAAGAACGGAAGAGAGCTGGTCACTGTGAGCAA CGACCACAAGACAAAGATCTGGTCAGGCAACCTTGGCAAGCAGCTGGCTACCTTCAAGGGCAAGGATGAA TCGGCATCGACCCAAGCTGCCTTCAGCGCCGATGGTGAGTTCGTTGCCATGGGATACCACTCCGGAGAGG TCAAGGTCATCGAGGTCGCAAGCAAACGTGAGGTGGTCACCTGCCCAGATAGAGAGTCAAGGGTCAAAGG CATAGCTTGGTATTAAGAATGACCATCCTGGTGGGCTACGAGAGTGGGCATGCTGTGATTTTCAAGGATA TTGAAACTACCAAGCCAGCTGTAGTCCCACTCAAAGCAAACCATGCAGCCATCACAAGCCTGGCTTACTG CAACGGCAGCTATGTAGCTGCTATCACCTATGATAACATGTGTGTCGCTCTGTGGAAGAGTCCAATGGAT GCCAAAGGTGGAAAGGAAGGGATCGAGCCTACATACTTACTGCATCCTAAGTGCAATGGACTCATTACCT GCTGTACATTCAATCAGTATGGCACCAGATTGGTTCTAGGAACAAGAGATGCGATGTTGTTCATGTACGA GATCAATTACGGAAAGCCCACGTCAAAGCCGATCCTTCATCTCGACAACTGCCACAAGGATTGGATTAAT TCTTGCGCTTGGTCTCCAGCTACTGACGTGTTGGCCACTGCGTCCAATGATTCTACCATCAAACTATGGG ACATGAAGACCGGCAAGGTCAAGTGTCACCTCAAAGGTCACCAAGCAGCTGTGTACTCCGTCGCTTTCTC ACATGGTTGCGTTGTATCGGGATGTTTAGATGCATCGGTCAAGGTCTGGTCTCACCGAAGAGTGGAGATC ACCACTCTCTACGGTCACTCTCAGAAGGTCAACAAGGTGGACATCCATATACCTAATGCGGACCCTGATG TACCCATAAAAGATGATGTTGATAGCGATCATGAAGGCGAGGACGACGCCCCTGGAGCCAAATGGTCAGA TGTCATGGATGAAGAAGACTGGAAGAACCGTCATGAGAAGAAGAAATTGGAGAAGGATTCTGATGTCAAT CTGGAAGATGTCATTATTGCTTCAGCCAGCGATGATGGCACCACGCAACTATGGAAACCCCTCCAGAGCA ATGAACTGACTACTCTGATTGGTCACTCAGACCGCGTATTGAGTGTCGCCATGGCAACCAGCGGTCAGGT GGTCACTGCCTCCATGGATTGTACAGTCAAGATCTGGACTCCTCAGCTCTCTCCGGATCTTGTCCACGTA GGAGCCCATGATGCTGAAGTATCAGCAGTCGCTATATCAACAAAGACCAACTTTGCTGTCACTGCAAGCA GGAATGGAAGTGCCTGTCTATGGAAGATCAATGGCTCTAACAAGGGAGAAGGCCAAACAATGAAGCTTCT TCACACATGGATTGCTGCGGAATGCTCCATCAATGCAATCAGTTTCATTGGAAAGCACATGACATTTGTC TTAGGCAAGAATGATGGTTTCCTTACACTGTGGAAGATACAGGAACTCAAAGACAAACCTGGATCCTACA CAGCTGTGAGAGGGAAGAACCGTTTCTTGAATGTCTACGCCTTCACCTCCATGTCGAGCCCAGTGACTTG TCTGAAGTACGATGATGCTCAGGACATCCTGCATGTTGGAACCTGGAGCTCTGTCATCACCCTCCGTGGT TTCACCTCCAACAAGATCAAGCAGAATGCCAAGAGTGTGTCTGACTGGGTGCTGGACCTGGCTCTCATCA AAGAGAAAGGTGTTGCTGCTTCCCTCTGTAACGGCACAGTGGCATACTGCAAGGAGAAATCAATCGAGAC GCTCGATGTATCTTACCTGTCTCCATTCTTCACGCCCTGGTGCCACTCCCTGATCGTCCCTCCTCCTGAA ATTGGCAATGCCAAAGGTTTCCTGATCGGAGACTGGTCTGATGGTCTGATGATGCATGTTGAGGAGGACA GGAGTGTCCAGGTTATCAAACAGATACAAGGAGGAATGACTAGTCTAGCTCTCAGCCAGCAGCACATCAT TTCAGCCTCCAATGATGGCACAGTCAAGTTCTGGAACAAAGATCTTTCCAAACAGGTGGGTCAGTTCTTC TGTCCATCTCCAGTGACCAGCTTGACCACCATGTCTCGGACCAGTAACACCATCCTGTGTGGAGACCAAC TAGGAAACGTCTACCTGCTTGAGTGGAAACAGTAAATAGGACCATGAATGGACTAAGATAGTCCATGATA GGGTCTTACCTACTTCAAATGTCTTTTTCTTTCTTACATACTTTATGTTTGGACTTTAGGCAATAGATTT ATATTAGGTATTCCATATTAAACCTATGAGGTACATTTGTAGTGTGAGGTACGTACTTATTGCAAGACAG TGGCAACATTTGTTTATTCCTATATGCTCTCTACTTTTGCCTTTGTTTGATAAGTTTCAAAGGAGAAACA CAATGGGTAACATTAAGATGCAATCGTTTTTTTTTCCCTCAAAATTGAGAGTTTCTAAATGTACATCAAT TTTTGTCGAAGATCTTTTATTTAGCACATATATTATACATTGTGCAATAATATACATATTTAACATTTGA TAGTGCATGAATTATATTAACAAAAACCTGGTATTTGTGTAATGGGCATGTTTAGAGTATGACTCTTTTG CTCTCATTTGATATTCATAGGTATATTAGATATGCTAAATTGGAAAAAAGAATATTTTAAAAGGTAATAC AAGATTTTCTTTGTAAGGTTTGAGCTGATAGCATTATATGCAAGCAATCTTTATTTTGTAAATAATAATC ATATAAGAATAATCTGTGCTAAGTGTTTAAAACAAAGGATTTTTTTTAGCTCATGTCAATGGTTAAGTTT GTAGATATTTTGCTTGTTGTTGGCAGATATTGCATTCCCTGTTTCCTTCCTATTTGAAATAGATTAAACC TGTCTTTCAGTTTTGTATAACATCTCCAAAGAGAGCAGAAGATTTGATGTTTACTATATAATGTTACCAT TAGAATATTTGAGTCCAGACATGTGATTATAGCCTAAGTTTGAGAATTTCTCCATATAGTGACGTAGTAT GTTAATTCAAATATTATTTGCAGTGTTAGCTGGCTGATTTTATCAAATTATATTTTTCTTGTATTTCATG CAAGGGAGTTTGTAATTTCTTGATATAATGTGTATTGTCTTCCTCTAATTTTCTCAATGTAAATCATTGT ATTTTTGATTACAATTGTTCTTTTTCTGTGCCTCATCGTGAAAAAAAATAAACCAGATGGAAGATATTGT ATTTCTCTGTATTTTTTGTAAAATTTGAACTACATGGTGGTTCATTTTTATATGATACTCACATTTTATA ATGAATATCTCAGTAGTTATATTGGATTTGTTGAACTGTGTGGACTGCATGATTTAAATGACAGTCATAA GAAGAAAAAAATCATAAGCTGATGTTTGTGTTTGTAGGAGTTTTAACCGTTCCTTGACTGCAACTCCATT CCATGTTAACCAGCTACCATATATAGTATAGCTTGTATTGTGATGTAAACTATGAGATGTATGCATGTGT ATTGTTACATTTTTAAACCAAAATCATTAGATATGTCATCATTTTATGAAGAAATGTAGCTACTTTTGCT AAACTGTTCCTAGTTTAAAATAGTTATGTAAAAAAAAGAAGGGTAATTTACTTTGAAATATATTTTACCC ATTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds