Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT103088.1 TSA: Strongylocentrotus purpuratus WHL22.728834.0 mRNA sequence GCCCCGCAAGTTCCTCGCTCCTGATAATTGTCAAATCTCCCCAGTACGTGCAGCGCAGCACGACGAAACA GTAGAGTAATTGTATCTTTCTTGTACGAAACAACGGGATCCGTCCAATTTGCGAGTGTGTTTCTAAATTG CGCATCCTGTAACGGAAGATTAGTAGGAAAATCAGACAACTCTCTTCATAATTTCTGCTCCTTTTGTCGC CGCCCTGACACCACCATACATGCCTGCGAATACGAGGAACATGCAGGTTAATAATATGGCGAGCTATTTA ACGTTTGTGGTTCTCTTTTCAGTAGTGGCCCTACACACGAATAAAGTCGCTGGACAGTTTTATATCGGAA CACAATGCAGTTGCCCTACCTTTTGGACCGGCTATGGTAATTACTGTTACAGATATTTCAACGATGTAAA GACATGGCTTGAAGCGGAATTCTACTGCCGGACGTTCGGTGCCGGTGGATGCATGGGGCAGACCGGTCAA GCTCATCTGGTGTCCATTCATTCGCAGGACGAAAATGATTTCCTCTTTTCATACTTCGACACAGTCAGGA ATAAACTACCGCCCGCTATCGGCCCCATTAGGGATGAACGTCTATGGCTCGGTTTGACGGACAAGAAGCA GGAAGGATTCTGGACTTGGTCCGATGGAACGAATCTCGACTACGCCAACTGGCGGGCGGGCGAACCCAAC AACAACGGTGGCAACGAGGATTACGCACAGATGAGCGTCGAGATCAACCACGAAGGACTTTGGTTCGATA TGACAGACGCCCACGGAGATTACATCGTCCATTACATCTGTAAAATGGCTCGGTAGAAGTAGTTCCACCT TTTTTCCAACCGACATCCAGAAAAAAAATCGTACATTTTCGAAAAAGAAACATGTGATGTGGCCCGTATT CTACTAAGATTTGAACCCGAGGTTAGTTTTAAGCCATTTTTCTTCCCCTTTTTTGAAAATTGGGTTCCAC GAAAGGACGTTATTATGAGGTCAAATTTTTCTTTTTTTATTAAACTAGATTTCAGACACGGGGTCGGGTT TAAATGAATTAGTAGAATGCGGACCATTGAAAATTCGAACCATAAGGACGCTCGATTTTACCACATCACG ATGTCACGATGGATGTTGTCGTAAATTCACAATGGGAAATTCGCTAGTCACATCACGACGTTTAGACCGA AGTGAATATGGGCCTAGTAGGTACGGTTAAATCAAGAAACGTAACAAGGACACCTAACATCCTTTGGCGA AAAAGCACCACTTTCATGAGTAATGAAATTATGGATCAGAGTTCGAGAAGTTTGAGGGTTTTTTGGTAAA ATTTTTGACAACATAATATGTTGCAAGAAAATATTGAATTGGTGCTGGGCTGATGAAAGTTTGAAAGAGC CATCTACTCTTTGTTTAAGCATGTTGTCACATCAAGCGCATATTATGACGTTGCAGAAGCAGATGTATGT ATGATACTTTTCGCCAGCTGTATTATAATATGTTATTATTTTGTTTAAGCTGAATAGATAGCTGTAATCC TTTTTATAGATTTGACAAGCATTTACTAAACAAATGCGTACAGATAAAATCATATATGGGTGAAATTATC TAGTACTAAAAAAATTATTGAAAGACTTAATTTTTTTTAAATACTGACAAAAAATATCGTTTCAGAAAAG TTAGATAATTCAAGCCGAGAACATAAGTGCAATATTTTTTATTATGATAATTCAGTGTGCAATATTCATC AACAGGGCATTGTTTTAACCATTTTATTCAGGTTAATGAGGGTGTCTCTGTACAATGATTATTTATGTGG TTTTTTCTTCTAATTCTTAACTTTACTTACACTCTCTTAATAACGAAACGAAGTTTAGTCATTTCACCCA AAGTGTAGATAGCATACAATCTTGTAAATATGAGCGTTTCGCATCATGTTGTAAGTAGCCTATCACCATG ATTTTGTATCCTTAAACAATTTGCGTTTTTTCTCCTTTTCTTTGTGATGTCTAATATAGATATCAATTAA ACGTATTGTATTTGTAAGTGAAAAATAACAAACATTTGCAAAAACTGTTACTTCAATTTCTTTCAAACTA TTTTTATTTGCAGGTGGTGAAAGAAGTGTCAGTGAGAAAAGTGTGTATACTCTTTTTTATGTCGGGCATT CCTCTGACAAGCTTTATGAATGTTCTTATTAGCCATTGCAGTAGAAGTATGCATTAAATTTGAATATTTG AACCAGTCTCTGTAGGTATATTCGATGTAAATGACTGAAAATTTTGTTCGCCGAAATGTTTCATACATGT AGGATGCTCATAACTGAACTCGTTTTCTACTCAAATTTAAACCCGACGCTGCGTGAGCCGTTTTGCTCGA AGTCGAGTTTAACAATGGAAGACACTCCGAGGTCTAAGTTTTCCTTCTCTAAACGAGATCTTAGACCAAT GGCCGGGGTTATTGAGTTAGTAGAATACGGATTCATGTTTGTTTGGGTGTACAAAGCACTGAGCTGACTG CTTCATTTAGTTGATAGTAAAATTACGAACTTCTTCAAGCATTTAGGTGTATTATATTCAAAGCTGTACA TATGCTGTGTAATAAATGTGTGCAGAATTATCTCTAATCTGTGAAACGTGATATGGTGTTTGATTTGCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds