Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT109592.1 TSA: Strongylocentrotus purpuratus WHL22.381929.0 mRNA sequence GTCGCATTGAAATAATAAGGTCACGCTCTTTCGAGGACGATTTAGAATGCTACGTTCATTACTCATCATG CTATATTTTAAGTAATGCCATACAACTAATTGAACGTACCATGTTAAACACGACAACTTGAACACGGAAA TTTGAAGGAAAGAATTTGTAGCATATAAGTAGTCCCACCCATAAACAATCATGCTGCAACAGATACTGAA GGATATGTACATCGACCCGGAGCTCCTGGCGGAGTTATCGGAGCACCAGAAGGAGCTACTCTATGTGAAG ATGAGAGAGGAGCAAGTACGGAGATACAAGAATCGGGAAGAGGAAGAGAAAAAGACCCCACCGAAGAAAG TACCAAAGAAAGGCAATAAGAAGGTAGTTTGGCTTCAAGGTCGAGATGGATGCGAATGGGTTTGGGTGAT GGGACACCATAAAAATGACCGAACAATAGAACAGATTTTGGAGAGAGAGAACAAGGAGAAAGCCAGGTTA CTTGCAGAGAAGGAGGCACAGGAAAAGAGGAAAAAGCAAGAACTGAAAATGAAGGGGAAAGAGAAAGAAG GAGAGGAGAGACAGAAGAAACTGAAAGAAGAAGAGGAGAGACTTAAGAAGGAAGAGGAAAAACTGGAGAG AGAAAGGAAGAAAGCAGAAGCGGAGGCGTATGCTTCGATGAAGGAGCTTCGCCAGCAGCAGGCGAAGATG GCCAAGGAGGAGGCAGAGAAGAAGAAGAAAGATCAGGAGCTTAAAGAAAAGAAGGAGCAACTCAAAAGGG AAAGGGAACAGAAACAGAAGGAGCAGAGGGAACAAGAAGAGCAGCTGCGCAAGGATGAGGAGGCGAGGAG AGAGGAGCTCTACATGAGCCTCAAGCAGATACGAGAGGAACAGAAGAAAGCATCCATGAAGGAGAGAGAT AAGGCCGATAAAATATTCCAAGTCCAACTAAGAGAATCCAAGAGGGCGGACAAGGACAGGAGCCACCGGG CGAAGATAGCCAGGGAAGAGGTCAGAAGGTCACGGATCCTGAGCAAAGACCTCACCCATCTCACCATCCA AGAGGAATTGATTGTTATGGACAAGAGGATCGTTCCGCCAGAGAAACCCCTCGAGGAAGAGAAACCATCC CTTCCTCTAAGGAAGAGGCAAGCACCTAGACCTCCCAAACCCACCGGCCACAAATCAGTGGTGGAGTGGT TCCAGAAGGAAGAATGTGAAAGACAGGCAGGACTTCTCAAAGACACCAAGGAAATCGCCCCCTGGTTCCA TGGCATCATTACACGTCAGCAAGCAGAGTACCTCCTATTCCCGAAAGCAGAGGGTCACTTTCTAGTCAGG GTTAGCAATCGTATCTGGGGTTACGCCCTTTCGTTTCGGGACAAAGAAAGAGCCAAACATTTCTTGATCG ATGCGTCGGGTAGCATGTACAGCTTCTTCGGTCAGGACCAGAAGGACCATGCTTCCCTGGAAGACCTGGT TCAATTTCATATGCGAATGCCGATTTCAGAAATGGGGAAAGAAGTCTTGAAAACACCCTGCGTTCAAGCT GCAAATCCTCCCGACTATGAGGAGCTCTTCTCAAATCAAGACAATCATAATACAGTACTTTGATTGCAGC AGTCAAAAAGCCACAGATCCAGCCAATCAGAATACAGTACTTTGATTGCAGCAGTCAAACAGCCACAGAT CCAGCCAATCAGAATACAGTACCTTGATTGCAGCAGTCAAAGCCACAGATCCAGCCAATCAGAATACAGG ACTTTGATTGCAGCAGTCAAAAAGCCACAGATCCAGCCAATCAGAGTACAGGACTTCGATTGCAGCAGTC AAAAAGCCACAGATCCAGCCAATCAAAATACAGTACTTTGATTGCAGCATTCTGGAGATACATGTGTTTA GCCAATCATGTTGCAGGACTTGTATAACAGTTAGGATGACGATGCACAGGTGCTAGTCCAAATAATCAGA ATGCAGTACTTCAATAGCAGCTGTTTGAAAAGACTGAGGGATCCCAAAAAAGCATAATCTATAGCAAATG TATAAATTGCCTTTTGTAATTCAAATATTGATTTGCGGAATGTACTATATTAATGTACATTGACTTAAAA ATGAAAATGAAAACTGACACAGTAGTCCAGCCAATCATTAAATTAACCCCTTTTTATGGAAGATAAGTGT ACATTACGGAGTATATTTATATCATGGATTGACACAAATCATGTAAAGTGTCGCGATAACTAAAAAAAAC ACATAAAACATTGGTTTTAAAAAGAAAAATATATTTACAAAAATAGAATCATACAGATAGCCCAAATATG AATAATATAATACATGTACCCTATCATGGACATTTTGATAAAGAAACGTCTAGTATTTAAGTATCTATTA ATTACTCCTTACTGGCAAAGTACATTTTATTTTCTGAATGTTTTCAAATATTTCACACTGCATGTTGCCA AGGCACAGTGAAAGATTGTTTGTTACTCACCTTGTAGATATTCACTTTGTTCTTTCATTTCTTTCTGTCT TGTACTTTCTAAAGCAAAAGTGTCTGCAGAATTTTTTTTACCTTGTTTATTGCATTTGTTGGGGGTCTAG TATATTACCATGAAGGTGAACATGTCCAATATTGTATTGATGTTACTTATGAAGGTTACAGATATAACAT TGTTACAGACTTTCAACAAATCAATGCAATCCAATTACAATAGCCTTTTGCTTCACGTTTTGAGATATGG AACATGACAATTCTATTTTACATGTTTATAATCTGAAAACATGATTCTATCATCAATTCAATAAGGTTTT GAATTTGCTCTTCAGTTGGTTTCTTGAAATTCTGTGCGATTTCTAATCTGTTGTATGATTAGAAGGAAAG ATCAAAGAGGTTGTAAATTAATTGAAAACATGCTATGATATGATCATATAATATTCTGTTCTTGTATAGC GCATATCCCATTATATCGTCTCTTTGCGCTTCCAAAGACCTTTTTTGGAAATTATTATCCTAGCTTTAGC TCTGGCAGCCATTTATCAGCACAGTGCATTTCAAGGAATAATCCTTCCAGGTACTCATTTACCTCACCTG GGTGGAGTGTGGCAAATGTAGATTAATGTCTTGCCAAAGGACATAAGTGCAGCGGCGGGACTCGAACCGC AGACCTTGTGATCCACAGTCTGGTGACATATCCACTCGACCACGACACCTCTACATATAATCAAAGTAGG TTTAAAGAAATCATGCAGCGTGGATATAAAACAAATTTAGGCCAAGGAAATTAGAAAAGTAGGACAAAAT AGATAGATTATTCAAGTCTCAAGAAATTGTATTTAACTTTAGCTTGACCATAAATAACACAGAGAGAATG TAGAAACCCATTTTATTTTACAATTAATCATGTATACACATAGATGGCAGTTTTTAAGTCTTGGCCAGTA TGATCGAATATGAAAAAAGTAGGACAAAATAGATGGATTATTCAAGTCTCAAGAAATTGTATTTAACTTT AGCTTGACCATGAATAACACAGAGAGAATGTAGAAACCCATTTTATTTTACAATTGATCATGTATACACA TAGATGGCAGTTTTTAAATCTTGGCCAGTATAAATATGAAAACTGTGTATGCATACATGCTATGATATGG GCATATAATCAAGGTAGATTGAAAGAAAGCAGCAGCGTGGATATAGAACTAAATTTAGGCCTAGGAAATT AGAAAATTAGGACAAAATAAATAGGTAAATCAAGTCTTAAGAAATTACATGGAATAACAAAGAGGGAATG TAGAATCACATTTATGAAGTATACATGCATGTGACTGGTTATGGATCCTAGCCAGTATGAATATGAAACT TGTGTAAACGTCTTCATGGTCTTTATTGCCTGTTGCCAATTTGGCTGCAACCAGGATTCTTTTCTTCAAT TTCTCTTATTTTTGTCTCTTGATTATATTCAGCATAGCCACATTGAATATGCTGATGGGTGTGGGAACAT CCTTGGTGAAAATGTTATCAAATGCAGAATTTTATCAGATTACATTATCCCTGCTAGTTCTTTTGAGATG TGTGCCAAATATGTTTAAGGATGCTGAAGTCTTATTGATCCTAAACATAATCTTTTATTTTCATGATCCG TTACTTTCATACCTCTATGGTTTATCTATAAAGTGTTTAAATTGGCATTCGGCAACGCTGTATTCACGTA GCAGACATAACAGCAATCAGAGGTGAATGTTGCCTTGATGATATCAGTACTAGCAACATTATTTTGATTA CTGTTAACTGATGGAGAGAGAGAGAGAGAGAGAGATTGTGATATTTTAATAAAGAGAGAAGTCTATTTTG TAATGTTTTCTTAATAACTTGTTAAATAGCATTTGGTATGAATAAAAATGGTGATTGTATTGCGGTCTAT ATAATGATAGAAAAAGGAATGTGTCATTTCCCACCTCCAGAATGTGGATATTTGCAGTCTTTTTTTAAAT ACATGTAAATGTATTTTGAGAGATATTACTATGGTAATCTGTAATTTGATTTAGTTGGTAATAATGCACA TATTATTGCAAATATATTCATCACATATTAATACAAAATGATTTTTACAACTCAGCATTATTCTGTTTAT GTCTTTAGTATTGATAGTGGTTTTACACTGTTCAAATGGTTCTTCATGTTAAGCCTGCATATTTTGCAGC ACTGGAGTAATATAATGTTTACTTGAAAAAGACCATACTAATACATGTAGAGGGCAAATGACTAAAAAAA AATGATCAGATATATGACAAACTCCTGTAAGCATATAACGTTGCATTAGTGATTGCACGTAAATTGAAGA AACGTAATGCTAACAATGATTCATATAGCTGTTATTCAAGTTATTTATGTGCATGGATGGTTTTATTAAT GTCTTTCTCGGTTTAGGTATTTACATAGAGTAGCATATAGTAGGTTGGAGAGGGGTAACATGTACTTTTA ATAAATAAGTGGATTGTTTTTAATGGTAAAATGAACATTTCAGTTCATTATAAGAATATTTGGAGCACCG GTAGGTCATTTTGTATGTATATTCTTTTGTATCCATCCCCTAGTTTAAAATGTCAAGCTAGGATGTTGCA TACTTGTAAATGATGCTTTCTTTTTATATATGTATACATATATACATATGTATGTAGGTAACACTTATGG GTAGTACATTAACCATTTAATACAGTTACTGATATGCAAGAAATATAACCAGTGTAATTTTGTATGAAAC TGGAATTAACCCTAGACATGTTTTGTTTGCATTATTTGAAAAACACAGCATCACATGACTTAGGGTGCGT TTATGCTCAATTTTGAAGGCAGAATGAGCGATTTGAGATGCTCATCGTAAACGCTCATCGTAATCGCAGT TTCACGGTGTACTGTCTATGCTCACTTCTCTGGCTCCTCCAGGCATGATTCCGGCTCTGAGCTGGATTCG CAAACCTGCACTGCGCATGCTACATTCACCCCATTTAAACGCGTTTACAAATGATTGTGCGTTTATGCTT CCCCAGAATCGCCGATCCAAAATGCACCTTTTTGTGAGTTTACGATTGGCGATTGTGATCGCCGTGTTTC AGTGATTCTACAAAAATGAGAAAGGACACAACCGTGTTTTGAACTAAACTCATAACAAATGCCTCATTCT GGCCAAAAAAAGTTGAGCAAAGCTAAGATAATCAGTAATATTTAACAAATTGCACCAAACAGTATAATGT ATGTAAATCAAATTACATGTTTGCATTTTTGTGAGCCTCGATCTAGGCAGAGTATTAATAAATTATTTTT GGCAGCCATTTTTTTTAATGCCACAAGTCAGAATGATTTTGATGAATAAAACCACTGTTACAATCAAGTG CCTATGGAAACAAAGGGAATGATCTCATTTTCTACACTTTTTTTACAAATTTTAAGAATTTGTTAACATT TTGTCTTTGCCATATCAGTTTATGAGCAGTTTGCCTTTTTTGTGAGAAACGATGTAAAACTTAACTCTTA TGATGTTTATGTGCATGTACAAAGTGCACAAAGTTATTTGATAATGCACGGAATGTTTACTACCGGTAGT CATTTGTTTCTTTTGTATTATAACAATGATGGAAAACAAATTGAATAATCTTAGATAATACATGTATGCA CTTCAATCAAGTATGGGGTATCTAAACTTGCTTCACCCTTCTCCCATATAACCTAGGAAGAGACAACTAT AAATCATATACATGAACAGAAATTTCAAGCATTTGCTTTACATTTTAAAAGTGAAAGATTATATGATAAA ACATATTGTAGATTATTATCCTCATAATCAATTGAATACAAAATTTAAAATAACATTTACATATCATTGT GGTGCTAAATTTATAATATCTCATGCCATACGTGCCATGCTTCCTACTTTTTTGTACGTTTGATTTATTT TCTATAAAGAAAATTTTTCAGGACTCCATCATGATACTAGATGGTAAATTATTAGCTAGGCTCATTCCAT TTTATGTTAAACTTATTTTTACTTGACTATAGACATGTATAATACTTATGATTTCTTTTATATTATAGTT ACAAGTCAGTACTATACATTGTACCTATTCATTTATCTTGATTTGGTAATTATTGATTTTTTTTTCTTCT CCCGTATAAAGTTGCGTATATTTTCTTTTTTTTGTGTGTTTACCTTACTATGCTTTGTAATATATAAATT TCCAGTACTAGTTAATTATGGGCATAATCACTGTGGATTGAGATGGGTAAACAAAAAATGACAGTAAACG ACATCTTGATGATTACGGTAGATATTGTTATTTCAACGTTATCTTTTTATTTTGAAGCATACATGATTCA GTGAATCACATGTTGTATTTTCATATTAAATTATGAACGGCTAACATGTACTTATTTTGGAATGTGTATT CTATTAAACAAGTAATTGTCAACTTTATCACAAATTGTACTGTAGTTTTGTTTAGTGTAGATTTGTTGAT TACCGAGGCAGTATAACTTGTGTTTGTGACAAGATTATGTTGTTTATATCATCTTTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds