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Echinobase Accession
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Echinobase Accession
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Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_041613913.1 PREDICTED: Lytechinus variegatus bromodomain adjacent to zinc finger domain protein 1A-like (LOC121419440), transcript variant X1, mRNA AGTAGTCGAGTCGTCGACGAAGCGCGCCCTCGATCATTTGAAGAGTTATTTCCCAGACTTTTTGCTGAAG TACGAGTAGTAAATTTGAAATACAGACTGGGAAACTTCTGTTATTCCGTTTTTATACTCGAGACCGCATA TTCCAGTTGAACAGTGCAAATGATAAGATCGTGAGTATACTGTGGTTTGAATGTTCACGCCAGGTCTAAA GCAAAATGCCATTGCTTCGTCGTCGAGAATTTCGACCTGTGAAATTACCAAAAGATCTGAAACCAACAGA GGAAGTTTTCCTGTGTCGACTTACTAATGAAATATTCAGAGATTATGATGATTTCTTCAAGAGAACCATT CTTTGTAACAGTCTGGTATGGAGCTGCAGTCTTACAGGACGCCCAGGTCTGACTTATCAGGAGGCTCTGG AGAGTGAAGAGAAAGCCCTCAAGTTCCTCTCCAGCTTTCCTGTTTATCTGGAGACACCGGTGCTCCTCCT TGCTCGGATGACCAAGCGAGGGAGATTATCTGACATGTGTGAAGACATCTTTGCCTTTGTGAAGGATCGT TTCTTTGTTGGAGAGATAGTGGATGTTGTCCACTTAGATACCAGAGAAACATGTCGGGTTAACCGTGTGA TTGTACCTCCCGAATACATGGATGATGTCAGTGTGGCTTCAGAGAGCAGTGATGATGAAGTCATCTTTAT CAAGGATGATGGAAAGGAAGAAAAGCTCAACACTTCTCATGGAGAACAAAAGACTCCCAAAAGGACATTG AAACCACAGATGCTAAAGCCAGCCACCTACAGATATGAAGTGACTTCTCTTCAGGGTTCTGGGACATATA TTGCTCCTCATGCCAACGTCAGTCGTAAGAGAGGGCTCTTCACAAAGGACAAGAATAAACTTTACTTGAA ACACCACTGTAAGGTGATTGACTTCATCTGGAGTGTTAAGCCCCAATATGTTGACAAGTTTCAGCTGGAT AAGAAATCCTTTGGGGACTTTTTTGCTGGTCCCTTGCCCAACTTTTCGTCCACTCCTGCGAAGAGGAATG TGCATAAGGTCATGGTTGAATCAGATCCAGGGTCATCTGCCGATGATGACACAGAGGAAGAGGAAGATGA CGAGGATGAAGATGATGACATCCCACTCATGGAAGTGAAGAAAAAGGCAGAGGCAAAGATGGGCAAGATA AAGAAAAAAAAGAACAAGGGTGCCAACAAAGAGAACCAAGTAGCTCAGCCGAAGCTAACAAAGGAAGAAC GGGCAGAAATGAGAGAGAAGATGAGGGCTCAAAAAATTGCTGAGAAGCTTGAGCTGAAGCAGAAGCTGGC TGAAGAAAGAGCATTAGAGAAGGCCAAGAGATGGGAAGAACTTGCCAGACTCAAAGAAGAACAGAAAGTT CAGCGAGAAAAGGAGAGAATAGCGAGGAGAGAGCAAATGAAGAAGGATATTGAAGAAAGCAAGGAGCGAA GGAGAAAGGAAAGAGAGGAGGAGAGAGAACGCCAAAGAGCATATTACATTCAAATGAAGGAGTATATGAA ACCAAGAGAAGACTTAGAGTGTGATGACCAGAAGGATCTGCCAGAGCCTGTTCCTTTGTCAGGAAAGATT CCTCAGGAGTTATTTGGTGACTGTATACTATTACTTGAATTCTTACATGCATATGAAGAAGAGTTAGGAC TCAAAGAAGACTTCCCTGATGGTGTCTCATTAGAGATTTTTGCAGAAGCAATAACAACCAACAAAGTAGA CGGTGCCATGTTTGAAATAACAAGATTCTTGTTGAAAGCTCTCTTTAGAGTTCAAGAAGAAGACGAGGAG GAATGGAAGACTGATTTAGAAGAGCAAGGGATGGAAGTACCTAAGTTGAATATATGTGAAGCTAAGTTAG AAGAAGATCCTGACCCGACCTATGGAGCTATGAGTAAAGCAGCTACAGCAGCTCTTGCATGGCCAGTAGT TCATCAAGGTACGGAGCTGAGGAAGCTCTCTATTGATCCTCCAACTCTGACAGAGATTGTACGGCTTCAC TTTCTATCATCTGGAGCAAACACTACAGGATATGAGGATTCTAAATGGCGTTACCAGCAGAGAGGTGGCT ATACGTTTCATGATGATGCTGGTTTGGAGTTCCGTATGCAGGAGTCCGCAATCCTCAAGACCCTCACTAA AGGAAACATTTATGATCTCAGTTCAGAAGGTAAATTGAAGGTTCTAACAGCTCTGACCAATCAGCTACTG ACGTATGTGACTATGCGTGAAGTCATTGAGGACAGCTATGATACATGGAATACGACTCGCAGGGAACTTC GAGATCTTCAACGGCAAGAACAACGTCGGGAAAAGGAAGAAGTCACTGCAAAATGGAGATTGAGGATGGA GGAAAGGTTGAATGAGAAAGTACAGGTTGAGAAGGATAGGCTTGCTAAGCTATCACAGGAAGGTGTTATA GAGAATGGAGATGCTCAGGGTTCAAGTACACTTCATGTTAGCACTCCAGAACAACCAGGAAGTAGACCTC AATCAAGGGCGAAAGAGAATTCCCCAGGGGATTCAGTGGAGACATCGGACCTTCCTACACCAGGGATGTC CCTTGCAGAGATTGAGAAGAAGAAGAAAGAGATTGCAGAGGATAGTGCTGAAAAGAAAGCAGAGTTCTTA AAGCAGGAAGCGCAATTGACAAGGGAGATTAGTGAAGCCATTATGAAGTACAATGTGACTCCAATTGGGG AGGACAGATTTTTCCGTAGGTACTGGAAGTTCAATTCATTGCCAGGATTATTTGTGGAGTGTGATCGAAA CATTGATGAAGATATTCTGAAGAGGATGGAGGAGGACATGTATGCAAAGCAAATAACTAAAGTTGAAAAT TTTGGTACTCGCGAAGATATCCAGTCAACCACTGAGCACAATACCTCTAATAGCAGTAACAAAGAAAATG TGGACAGTAATGTGATAGCCAATGGAGCAGTTACAAATGGAGATGTGCCTTCAGAAACTCCTAAGGACCT GACAGCTGATGAGAAAGAGACCCCTATGGAGGTCAATAATGTAGAAATGCTCAGTAATGAAGCGCCCTCT GGTGACTCTGTTTCAAAGTGCCATTGGGCTTTCTACAATGAAGCAAGTCAGATTGATAAGCTCTTAGAAG CTCTGAACACACGAGGTCTCAGGGAAGCAGCTCTCAGAGACAGTCTCCAACAGGAGAAGGCTTCAATAAT TGGCTCCCTGAATGCAGTCCCCACAGACTTCCTCACTAAACATCCATCAGATGATGTGGATTCCCAACCA GCAGTAAAGAAGCAAGTGGAGGTGAAGATGACTAGTGGCAAGAAAGGTCTTTTATCAAATAGTGCTGATG GTGATGAGAAACTTGAACTTATGCTCAGGGAACAGATTCTGGATATTGAAGATCGTTTATGGCAGGGTGC TTTAGGCTTTGTCAAGGTGACTGACCGTTCAGCTTGGGTAGCAGCGATTGAGCAGGGATCGTACGATCGT CAGTGTAAAGAGATTTCTTGGGGACCTGTCTGGGCACGTTCTATGTTAGATGATGGTGACTTCCTAAACA TGTCTTTGTCTGATCTACCTCTCCCAGAGGAGAAACCAAAGTCAAAGGATAGGCTGTCTGCTTTGAAGAA AGGTGATAGCGGTCATACAGGTTCACCTGCATCTACACGATGTAATACACCTGATCTTGCCGATAATGTA GTTAGAGATCTAGCTTGTGCTCTGCTTCAGGTGTCTCAAGGTGCCGATGATAAATACCTCAAAGCACCTC TTGGAAATCCAGAAGAAAATAAACCAATGACAAGAACAAGGAAAAAGCAAGAGGAAGAGAAAGAGAAGGA GGAAGAAGATGATAAAGAAGAGAAGAAACCCAAGAAGACATGTCGTGAGTGTTGGGAAGAATCTTTGATG GCCTGCACCAGCCTGTCTCAGATCTTCCTTCATCTCTCCACACTTGAACGTTCAGTCACGTGGAACAAGT CAATCCTGAAGGCTCGTTGCAGGATGTGCCGTCGTGGTGGTAACCCTGAAGCTATGTTGCTATGTGATAG CTGTAACAGAGGTCATCACATGTTCTGCCTCAAACCTCCCCTCAAGAAAGTGCCACAGGGTGATTGGTTC TGCAAAGACTGTGCCCCCAAGCAAATCAAGAGAAGCCCTCACAAACAGAGAGCAAAGAAGAAGCAAGTCG TAGAAGAATCGTCCAGTGAGGAGGAGGAGGAGGAGGAGGAAGAGAGTGAAGAAAGCTCAGAGGAAGAAAA TGAAAGTGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAAGAAGATGAAGAAATGGAAGTC GATGTTGATGAAGAAGAAGAAGAAAAAGAGGAAGAGGAAGACGAAGAGGAGGAAGATGATGAAGATAATG ACAGGAAACTGGAAGCCATGAACCGTGTGGCCCGTAGGCGACTCCATGGTATCAACCTTGACCACAATGA GCTGTGTAGGTCGTGCGGACATGCCGGCCAGCTCATTCTCTGCCATGACTGCCCCATAGTCTACCACTGC GAATGTCTTGATCCTCCCTTATTAAAACTTAACCAAGATCAGTGGTACTGTCCACTATGTGTCCAGGATA GAGCTACCAATTGTGCTGAATCGGAGGAAGAAATGGAAAGTGAAGATGATGATGCGATAGAGCATGATGA CGTCTGCTCCCGATGTGGTCATGGAGGTGAATTGATATGTTGTGATAATTGTCCTAAGGCCTTTCATATG GAGTGTTGTAAACCAGTTGTACGCAAGGTGCCAAAGGGACATTGGGAATGTGAGAGCTGCAAGAAAGGAT CCAAGTCAGCTGCCATTAGGGTACCAACAGGCATCAAAGGACCAGCTAAGAAGTTTGCCTCTAAACCTGC CAAGAAGGAGAATCCTAAAAGTCAACCCAAGGCTGAAGAGAAGGCGGGTTCTAGGAGCCGGTCTCAGAGT AGGGGACGTCAATCCAGACAGAATACACCAGAACCAAGCCAGTCAACTAAAGCCTCCAAGAAAGATTCTC AACCTGTCTTGGGTGCTAGTGGAAAGAAAGGTCAGCAGAGCTCTCAAGATAAGAAAGGGCAACAGTCTTT ATCATCCCAGGAAACTAGAGGAAGGTCAAAGTTTCAAGAGAAGGGAGGTCGGGGGTCATCCTTGGAGAGG AGGGGTCAGAAACGAAGTATTAGAATGGATTCTACAGACTCAGAGTCATCGCAGGAAGAAGAAGTCCAGA AGAAGAAGAATTCTGGAAAGGCTCTTTTCAAAGTAGCCCTTAATGGAAGCATGAATGCAGATGATTCAGC TTCTGATTCATCAGGGCCATCAGCTAAGAATCGCAGATCATCCAGTGGACGTGGTCGAGGGGATCTAACA CAGATCAACAAGTGTGAAGCATTATTAAAGGAACTCATCAAGCATCCAGATGCACGTCCATTCCTTAATG CTGTCAGCAAAAAAGCAGCCCCTGATTACTATCGCATCATCAAGCGTCCCATGGACTTTTCAGCAATGCA AACCAAGGTCAATGATTACCAGTACTCTAATGCAGCTGAGCTCATCGCCGATGCTAGACTCATTTTTACC AACTGTCAACAGTACAACCGTAGATCCAGCCCAGAATACAAGGCTGGACTTAAAGTATCTGCCTTTCTTG AGAAGCGAATCAAAGAACTAGACATTGAGGTTAGCCTTGAAGATGGTGGCACTGCTGATACGGACACGCC CACTTCAAGAAAGCGCTCCCGGCAACGATAACTGATCAAAATTTGGATTTCACTTTCAGTATGTTTTCTT TCTGTTGGTGTTTATCAAATTGTGAGAGTAAAGTTTGTGTGTTGGATTCTTTATAAATGCCTTGTAGTTT TCTTTGCCTTTTGCACAAGTCATTGATATATTCTGCATTTTGGCCAACAAAGTGAAGTGAATTTGTTAAG ATATTGACTATGCCATTCCTTTATATTGTCCCTCATCACAATCACTTTAAGTGAGTTTGAAGGTTTTTTT GTTCTAAAAAGAGAGATGAATAAATCATAATAAATGATAATCATACTAAATCATAATATCCTATTTCATG GAATAAAATTTACTTTTCTCACAATTTTATTTTTTCTGTAATTTATATTGAATGTATTGTATAACAAAAA AAAAAACTACAATAAAAACTAACTTGTTAAGTAAATCATTTTGATGTAAATAATTATGATGAGATGACTA GCATTCATTGAAAAGGGATTTACAGGTAATGAAATGTAATATATTTATTGAATTAGTGTGATATAGCTTG GGAGTCCCAGTGTTTGTAGAAATAATTTTCATTTGTAAATTTATTGAGTTTGTTATAATACTAAAATTAG AGAGACATTAAGTACGTCATATTTACGTCTCATTCAAACAGACCATCATTGCCCCACAATGCTTTGTGCA CTAAGTCAATAGAATCTAAAGCAGTCTTCTTTCAGTGCTGTTCATTCAAATTCCTTATAAAATTTAGTGT GAAGTCAATCTTGGCAAAAGTTGCACATGTTTTTAAGATAAACTTAAGAGATAATGAACTCATTATGTCA TAACATTCCTCATGCCATCATAGCCAATTCATTATGATGTCATGAGTTTGTCCTGCAACTTTCAACAATT TATGGGACTTGAAGTGTGTAATGTGTGTTGATTATCATAATTTGTCCAAGTGAACATTAAGAAAAATGAT TCCCAGTTTTGTCCTACCATATTTGAATGAAACTTGAGTGTTGAATTGAAGACTATTAGGGAGCATGAAT ATTGTGGTTCTTTTGATTACAAACTGTAGATATTGATTGTAGTACATTTTAAAAAATGTAATAATACCAT GTAATAATACCATGGTATCAGTACGCTTCAGCTTTCACAAGCTAGTTGTTAAATTTGTTATATTAAAGCA GCAACATTTAACAAAGCTACATTGTATATTGTAAATTTACCTCATTTAGTTCTTTTTTAAAGTAATTTAA GAGGATGTATTAGTACATGTTGGTGTATAATGGAGGGCTCATACATGTAGGTATCAATTAGTGATGAAAG CAGTCATCCCAAAATATTCAACATGACAAAAAATGTATAAATATAAAATAGGGAAAAATGTCTTCCTTGC ACTGTTCTCGTATGTTTGATTTCTTTATATTGTTTACATTTGAATTCAAGCTCATTTTATTTTCTAATGG AAGTCCATCCTTGAATTCTTTTGTCATCAATTTTTTTTTCTTTGTTGGCAGACTTCAATAAATCTTGTTT TTGTCATTACTGTACATGTATGCATTATGAATTATGTTGAAAAAAATCATTTCTTTCATTCATGAATTAT GTAAAAAAAGTAAAATATGAACCACTTGCATGCATGACGGAATTTCTTCAGTAGAAATTTTGTTGTTGTT AAACTCTTAACATGCCATTGGAGTGGCTGATCTGTTGGATATACATTTACTATTTAGTCTGTGTTTATGT TATTCTATAAACAACTGGTATAACCACAACCGTGAATCATGATTTTAAACACAAACATAAATCTTAGGGA CTGCAGAATCAGGGTTTAATCAGCCCTCTCTCTAATGCTGTTTCTCCCTCACTTCAAGCTTAGCTAGTGT GCATCTTAGTGTGCAGTTTGATCCTGGAAATATAGGTCAACTTCTATTTGGGTTTGAATTGAAAAAATAC ATGTTGATTTATGTGTCAGCTACTGTGTGAGTTGAAAATGAGTAATGGCTTCACATTTTCATGAACATGT AGTTAGGCTAACAATATGATGTCATGGAATCAAGTATTACATTTAATTGACTGATTTTGAATGTGGTTCT GCAGAAACATTTTTTCCAAACGCTTTTTTTTTTCACATTTCATGTTTATGATTTGAAACATGTTTACATT TGATTTAACGCAAACATGATTCTGCAGGAACGTCTCACAAAATGTGTTTCAAATCCTGATTCTTGGGTAA AAGAGTGGTGTATAAACAACCCTAATCAAGCATGTCAAAGGCCAATGAGTAAATTTGATATGAGATCTCA AGATTCATGATCAGCTGGCGACTTTGATATTTTGTTAAAAAAGGAACCTTGTAATTTGAATTTTGCTTGC AATTTCTCTGTCTTGTTTCCCCTCTTTTTTCTCAAATAATTTTCAGGATGGACTTCAATTGGGTACTAGT ATTCATTTAAATATCATCTTGCAATGCAAGAATATTAGTTTGATAGATGTAGTGTAGTTTACTGTTTTTG GAGTGTTAGATGATTCTTTTTTTTCTTGAAATGTTATTTCATGATGATGTTGAATAACTAGGCAGCCTTT TGGTGACACAAGTATAAGAGACATTTAAGAATGAAGCAAAATAGGAGACATTGTTTTTTTCCTGTTGTAG TATACTCTTTTCATATCCATTCAGTTGTGGGAAGATATGAAAATTATTTAATATTTTCATAGACTGTAAA AAGATATGTAAATAGCCATTTCAATTTTTGTACTCGAGTATCAATTAAGCTTCTAAAGGTCTTGAACTCT TACTTTAAAACACTATTTATCAAGAATTTTAGCATGAACATTTCATCAGTGAATCCGCTTCTAGGATTAG TGAGAAATTTGATTGCATTTTATCTAAATGCCCCTGTGTGTTGTTAGAAAAGCAACAATTACAAAATCAT TTTCTGTGTAGACAAGTCAAGGTGTATATGGTTTGGCCTCAAAGTTTACTATACAACAAAGATTTTTGAA AAGCAGAATTATCTTAACTTTTTTTGCTTACTTATGACTTTGGAAAGACCGACAAGTTCTCTGATAAATA CATTCATCAGATATCAAGTAAAGAATCTGTGGAATTGGGGAAAATGTGAATGAACGTCTATCTCTGTGGG TTCTCATCCTATTGCTATCGTGGGCAGAATTAAAATGAACGATTTATGTGTAACTAGCATTTATCACAAT TTTTTGTAAACTGTTTCCAGTTGAAAATCAACTGCCTTTAGATTTACACATTTTACCTCAAGTAGCAGAA TTTGATCAAACCAAAACACTGAACTGGTAGCTAACTCACCTAACAGGCTCAAGAATACTAAGAATGAATT ACCAATGTTTTAAGTACCTGTGTAAGTTATTGATAGTAGAGATCAAAGTAAATGTGGATAGCCTGAGAGA ATATTTCATTTAGGCACCCTACTAAAAATCTTTTATCAGGAATCCTTTGTAGGCTTTTTTAACAATGGTG TTGTAGCAAACCCAACTGATTTGTCTATGATGAAGATTAAAGATGGGAAACATGTAGGATAGGGGTATGA AACAAGATACTGACTTTTAGTAGGGTGCCTCTATTGATGTAGTGCGGATGCAACTTCTTAATGGTCTGGA AACTGTTTTTTTTTCTCTTTGTGTGTTCAAGTCAAAAGGATGAGAAAAAAAATGGAGCTGAAAAAGTTCT AGTTATTTTTTATTCAGTCCTTAACTTTGACATGTACGATTTCCTTAGGTGGCTGGAATTTCATTTTTCT GAAGACTTAAGAAACTGAAAATAAAACAAGGATATATGAATGTAAATATTTATTCAATATTAAAGTTTTT GAAAAGGAAATGGATAAGAAACAATGTCAATATCCTTTATTCCATATCAAAGAAAACTGTCATAAAAATG TCAGTGTTTAAGACATTGTACTTGAAAACTTTTCATTAACAAAGCCTGATTGAAGAAACAAAATGCATCT GCATGAATCCAATGCAATTTCTCATCTTTGCTCTTAAACTCTCTTCTTCACATAGGCTTTGTATCACCTG GTTCTGTTAAGCAGTAGATGTTTATGACTGAACTATGTGATTCATATTGTACATGTACAACACAGTTCCA GTAATGGTTAACATGCTATACTACATTTCAAGAGGTTACAAGATTAATCAACAGAAAGTGATGGATAATA AATGGTTGAGGACCAAAATTCTCTTAATTTCTTTGTGAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
