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Echinobase Accession
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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_041613914.1 PREDICTED: Lytechinus variegatus bromodomain adjacent to zinc finger domain protein 1A-like (LOC121419440), transcript variant X2, mRNA GTAGTCGAGTCGTCGACGAAGCGCGCCCTCGATCATTTGAAGAGTTATTTCCCAGACTTTTTGCTGAAGT ACGAGTAGTAAATTTGAAATACAGACTGGGAAACTTCTGTTATTCCGTTTTTATACTCGAGACCGCATAT TCCAGTTGAACAGTGCAAATGATAAGATCGTGAGTATACTGTGGTTTGAATGTTCACGCCAGGTCTAAAG CAAAATGCCATTGCTTCGTCGTCGAGAATTTCGACCTGTGAAATTACCAAAAGATCTGAAACCAACAGAG GAAGTTTTCCTGTGTCGACTTACTAATGAAATATTCAGAGATTATGATGATTTCTTCAAGAGAACCATTC TTTGTAACAGTCTGGTATGGAGCTGCAGTCTTACAGGACGCCCAGGTCTGACTTATCAGGAGGCTCTGGA GAGTGAAGAGAAAGCCCTCAAGTTCCTCTCCAGCTTTCCTGTTTATCTGGAGACACCGGTGCTCCTCCTT GCTCGGATGACCAAGCGAGGGAGATTATCTGACATGTGTGAAGACATCTTTGCCTTTGTGAAGGATCGTT TCTTTGTTGGAGAGATAGTGGATGTTGTCCACTTAGATACCAGAGAAACATGTCGGGTTAACCGTGTGAT TGTACCTCCCGAATACATGGATGATGTCAGTGTGGCTTCAGAGAGCAGTGATGATGAAGTCATCTTTATC AAGGATGATGGAAAGGAAGAAAAGCTCAACACTTCTCATGGAGAACAAAAGACTCCCAAAAGGACATTGA AACCACAGATGCTAAAGCCAGCCACCTACAGATATGAAGTGACTTCTCTTCAGGGTTCTGGGACATATAT TGCTCCTCATGCCAACGTCAGTCGTAAGAGAGGGCTCTTCACAAAGGACAAGAATAAACTTTACTTGAAA CACCACTGTAAGGTGATTGACTTCATCTGGAGTGTTAAGCCCCAATATGTTGACAAGTTTCAGCTGGATA AGAAATCCTTTGGGGACTTTTTTGCTGGTCCCTTGCCCAACTTTTCGTCCACTCCTGCGAAGAGGAATGT GCATAAGGTCATGGTTGAATCAGATCCAGGGTCATCTGCCGATGATGACACAGAGGAAGAGGAAGATGAC GAGGATGAAGATGATGACATCCCACTCATGGAAGTGAAGAAAAAGGCAGAGGCAAAGATGGGCAAGATAA AGAAAAAAAAGAACAAGGGTGCCAACAAAGAGAACCAAGTAGCTCAGCCGAAGCTAACAAAGGAAGAACG GGCAGAAATGAGAGAGAAGATGAGGGCTCAAAAAATTGCTGAGAAGCTTGAGCTGAAGCAGAAGCTGGCT GAAGAAAGAGCATTAGAGAAGGCCAAGAGATGGGAAGAACTTGCCAGACTCAAAGAAGAACAGAAAGTTC AGCGAGAAAAGGAGAGAATAGCGAGGAGAGAGCAAATGAAGAAGGATATTGAAGAAAGCAAGGAGCGAAG GAGAAAGGAAAGAGAGGAGGAGAGAGAACGCCAAAGAGCATATTACATTCAAATGAAGGAGTATATGAAA CCAAGAGAAGACTTAGAGTGTGATGACCAGAAGGATCTGCCAGAGCCTGTTCCTTTGTCAGGAAAGATTC CTCAGGAGTTATTTGGTGACTGTATACTATTACTTGAATTCTTACATGCATATGAAGAAGAGTTAGGACT CAAAGAAGACTTCCCTGATGGTGTCTCATTAGAGATTTTTGCAGAAGCAATAACAACCAACAAAGTAGAC GGTGCCATGTTTGAAATAACAAGATTCTTGTTGAAAGCTCTCTTTAGAGTTCAAGAAGAAGACGAGGAGG AATGGAAGACTGATTTAGAAGAGCAAGGGATGGAAGTACCTAAGTTGAATATATGTGAAGCTAAGTTAGA AGAAGATCCTGACCCGACCTATGGAGCTATGAGTAAAGCAGCTACAGCAGCTCTTGCATGGCCAGTAGTT CATCAAGGTACGGAGCTGAGGAAGCTCTCTATTGATCCTCCAACTCTGACAGAGATTGTACGGCTTCACT TTCTATCATCTGGAGCAAACACTACAGGATATGAGGATTCTAAATGGCGTTACCAGCAGAGAGGTGGCTA TACGTTTCATGATGATGCTGGTTTGGAGTTCCGTATGCAGGAGTCCGCAATCCTCAAGACCCTCACTAAA GGAAACATTTATGATCTCAGTTCAGAAGGTAAATTGAAGGTTCTAACAGCTCTGACCAATCAGCTACTGA CGTATGTGACTATGCGTGAAGTCATTGAGGACAGCTATGATACATGGAATACGACTCGCAGGGAACTTCG AGATCTTCAACGGCAAGAACAACGTCGGGAAAAGGAAGAAGTCACTGCAAAATGGAGATTGAGGATGGAG GAAAGGTTGAATGAGAAAGTACAGGTTGAGAAGGATAGGCTTGCTAAGCTATCACAGGAAGGTGTTATAG AGAATGGAGATGCTCAGGGTTCAAGTACACTTCATGTTAGCACTCCAGAACAACCAGGAAGTAGACCTCA ATCAAGGGCGAAAGAGAATTCCCCAGGGGATTCAGTGGAGACATCGGACCTTCCTACACCAGGGATGTCC CTTGCAGAGATTGAGAAGAAGAAGAAAGAGATTGCAGAGGATAGTGCTGAAAAGAAAGCAGAGTTCTTAA AGCAGGAAGCGCAATTGACAAGGGAGATTAGTGAAGCCATTATGAAGTACAATGTGACTCCAATTGGGGA GGACAGATTTTTCCGTAGGTACTGGAAGTTCAATTCATTGCCAGGATTATTTGTGGAGTGTGATCGAAAC ATTGATGAAGATATTCTGAAGAGGATGGAGGAGGACATGTATGCAAAGCAAATAACTAAAGTTGAAAATT TTGGTACTCGCGAAGATATCCAGTCAACCACTGAGCACAATACCTCTAATAGCAGTAACAAAGAAAATGT GGACAGTAATGTGATAGCCAATGGAGCAGTTACAAATGGAGATGTGCCTTCAGAAACTCCTAAGGACCTG ACAGCTGATGAGAAAGAGACCCCTATGGAGGTCAATAATGTAGAAATGCTCAGTAATGAAGCGCCCTCTG GTGACTCTGTTTCAAAGTGCCATTGGGCTTTCTACAATGAAGCAAGTCAGATTGATAAGCTCTTAGAAGC TCTGAACACACGAGGTCTCAGGGAAGCAGCTCTCAGAGACAGTCTCCAACAGGAGAAGGCTTCAATAATT GGCTCCCTGAATGCAGTCCCCACAGACTTCCTCACTAAACATCCATCAGATGATGTGGATTCCCAACCAG CAGTAAAGAAGCAAGTGGAGGTGAAGATGACTAGTGGCAAGAAAGGTCTTTTATCAAATAGTGCTGATGG TGATGAGAAACTTGAACTTATGCTCAGGGAACAGATTCTGGATATTGAAGATCGTTTATGGCAGGGTGCT TTAGGCTTTGTCAAGGTGACTGACCGTTCAGCTTGGGTAGCAGCGATTGAGCAGGGATCGTACGATCGTC AGTGTAAAGAGATTTCTTGGGGACCTGTCTGGGCACGTTCTATGTTAGATGATGGTGACTTCCTAAACAT GTCTTTGTCTGATCTACCTCTCCCAGAGGAGAAACCAAAGTCAAAGGATAGGCTGTCTGCTTTGAAGAAA GGTGATAGCGGTCATACAGGTTCACCTGCATCTACACGATGTAATACACCTGATCTTGCCGATAATGTAG TTAGAGATCTAGCTTGTGCTCTGCTTCAGGTGTCTCAAGGTGCCGATGATAAATACCTCAAAGCACCTCT TGGAAATCCAGAAGAAAATAAACCAATGACAAGAACAAGGAAAAAGCAAGAGGAAGAGAAAGAGAAGGAG GAAGAAGATGATAAAGAAGAGAAGAAACCCAAGAAGACATGTCGTGAGTGTTGGGAAGAATCTTTGATGG CCTGCACCAGCCTGTCTCAGATCTTCCTTCATCTCTCCACACTTGAACGTTCAGTCACGTGGAACAAGTC AATCCTGAAGGCTCGTTGCAGGATGTGCCGTCGTGGTGGTAACCCTGAAGCTATGTTGCTATGTGATAGC TGTAACAGAGGTCATCACATGTTCTGCCTCAAACCTCCCCTCAAGAAAGTGCCACAGGGTGATTGGTTCT GCAAAGACTGTGCCCCCAAGCAAATCAAGAGAAGCCCTCACAAACAGAGAGCAAAGAAGAAGCAAGTCGT AGAAGAATCGTCCAGTGAGGAGGAGGAGGAGGAGGAGGAAGAGAGTGAAGAAAGCTCAGAGGAAGAAAAT GAAAGTGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAAGAAGATGAAGAAATGGAAGTCG ATGTTGATGAAGAAGAAGAAGAAAAAGAGGAAGAGGAAGACGAAGAGGAGGAAGATGATGAAGATAATGA CAGTGCTGAATCGGAGGAAGAAATGGAAAGTGAAGATGATGATGCGATAGAGCATGATGACGTCTGCTCC CGATGTGGTCATGGAGGTGAATTGATATGTTGTGATAATTGTCCTAAGGCCTTTCATATGGAGTGTTGTA AACCAGTTGTACGCAAGGTGCCAAAGGGACATTGGGAATGTGAGAGCTGCAAGAAAGGATCCAAGTCAGC TGCCATTAGGGTACCAACAGGCATCAAAGGACCAGCTAAGAAGTTTGCCTCTAAACCTGCCAAGAAGGAG AATCCTAAAAGTCAACCCAAGGCTGAAGAGAAGGCGGGTTCTAGGAGCCGGTCTCAGAGTAGGGGACGTC AATCCAGACAGAATACACCAGAACCAAGCCAGTCAACTAAAGCCTCCAAGAAAGATTCTCAACCTGTCTT GGGTGCTAGTGGAAAGAAAGGTCAGCAGAGCTCTCAAGATAAGAAAGGGCAACAGTCTTTATCATCCCAG GAAACTAGAGGAAGGTCAAAGTTTCAAGAGAAGGGAGGTCGGGGGTCATCCTTGGAGAGGAGGGGTCAGA AACGAAGTATTAGAATGGATTCTACAGACTCAGAGTCATCGCAGGAAGAAGAAGTCCAGAAGAAGAAGAA TTCTGGAAAGGCTCTTTTCAAAGTAGCCCTTAATGGAAGCATGAATGCAGATGATTCAGCTTCTGATTCA TCAGGGCCATCAGCTAAGAATCGCAGATCATCCAGTGGACGTGGTCGAGGGGATCTAACACAGATCAACA AGTGTGAAGCATTATTAAAGGAACTCATCAAGCATCCAGATGCACGTCCATTCCTTAATGCTGTCAGCAA AAAAGCAGCCCCTGATTACTATCGCATCATCAAGCGTCCCATGGACTTTTCAGCAATGCAAACCAAGGTC AATGATTACCAGTACTCTAATGCAGCTGAGCTCATCGCCGATGCTAGACTCATTTTTACCAACTGTCAAC AGTACAACCGTAGATCCAGCCCAGAATACAAGGCTGGACTTAAAGTATCTGCCTTTCTTGAGAAGCGAAT CAAAGAACTAGACATTGAGGTTAGCCTTGAAGATGGTGGCACTGCTGATACGGACACGCCCACTTCAAGA AAGCGCTCCCGGCAACGATAACTGATCAAAATTTGGATTTCACTTTCAGTATGTTTTCTTTCTGTTGGTG TTTATCAAATTGTGAGAGTAAAGTTTGTGTGTTGGATTCTTTATAAATGCCTTGTAGTTTTCTTTGCCTT TTGCACAAGTCATTGATATATTCTGCATTTTGGCCAACAAAGTGAAGTGAATTTGTTAAGATATTGACTA TGCCATTCCTTTATATTGTCCCTCATCACAATCACTTTAAGTGAGTTTGAAGGTTTTTTTGTTCTAAAAA GAGAGATGAATAAATCATAATAAATGATAATCATACTAAATCATAATATCCTATTTCATGGAATAAAATT TACTTTTCTCACAATTTTATTTTTTCTGTAATTTATATTGAATGTATTGTATAACAAAAAAAAAAACTAC AATAAAAACTAACTTGTTAAGTAAATCATTTTGATGTAAATAATTATGATGAGATGACTAGCATTCATTG AAAAGGGATTTACAGGTAATGAAATGTAATATATTTATTGAATTAGTGTGATATAGCTTGGGAGTCCCAG TGTTTGTAGAAATAATTTTCATTTGTAAATTTATTGAGTTTGTTATAATACTAAAATTAGAGAGACATTA AGTACGTCATATTTACGTCTCATTCAAACAGACCATCATTGCCCCACAATGCTTTGTGCACTAAGTCAAT AGAATCTAAAGCAGTCTTCTTTCAGTGCTGTTCATTCAAATTCCTTATAAAATTTAGTGTGAAGTCAATC TTGGCAAAAGTTGCACATGTTTTTAAGATAAACTTAAGAGATAATGAACTCATTATGTCATAACATTCCT CATGCCATCATAGCCAATTCATTATGATGTCATGAGTTTGTCCTGCAACTTTCAACAATTTATGGGACTT GAAGTGTGTAATGTGTGTTGATTATCATAATTTGTCCAAGTGAACATTAAGAAAAATGATTCCCAGTTTT GTCCTACCATATTTGAATGAAACTTGAGTGTTGAATTGAAGACTATTAGGGAGCATGAATATTGTGGTTC TTTTGATTACAAACTGTAGATATTGATTGTAGTACATTTTAAAAAATGTAATAATACCATGTAATAATAC CATGGTATCAGTACGCTTCAGCTTTCACAAGCTAGTTGTTAAATTTGTTATATTAAAGCAGCAACATTTA ACAAAGCTACATTGTATATTGTAAATTTACCTCATTTAGTTCTTTTTTAAAGTAATTTAAGAGGATGTAT TAGTACATGTTGGTGTATAATGGAGGGCTCATACATGTAGGTATCAATTAGTGATGAAAGCAGTCATCCC AAAATATTCAACATGACAAAAAATGTATAAATATAAAATAGGGAAAAATGTCTTCCTTGCACTGTTCTCG TATGTTTGATTTCTTTATATTGTTTACATTTGAATTCAAGCTCATTTTATTTTCTAATGGAAGTCCATCC TTGAATTCTTTTGTCATCAATTTTTTTTTCTTTGTTGGCAGACTTCAATAAATCTTGTTTTTGTCATTAC TGTACATGTATGCATTATGAATTATGTTGAAAAAAATCATTTCTTTCATTCATGAATTATGTAAAAAAAG TAAAATATGAACCACTTGCATGCATGACGGAATTTCTTCAGTAGAAATTTTGTTGTTGTTAAACTCTTAA CATGCCATTGGAGTGGCTGATCTGTTGGATATACATTTACTATTTAGTCTGTGTTTATGTTATTCTATAA ACAACTGGTATAACCACAACCGTGAATCATGATTTTAAACACAAACATAAATCTTAGGGACTGCAGAATC AGGGTTTAATCAGCCCTCTCTCTAATGCTGTTTCTCCCTCACTTCAAGCTTAGCTAGTGTGCATCTTAGT GTGCAGTTTGATCCTGGAAATATAGGTCAACTTCTATTTGGGTTTGAATTGAAAAAATACATGTTGATTT ATGTGTCAGCTACTGTGTGAGTTGAAAATGAGTAATGGCTTCACATTTTCATGAACATGTAGTTAGGCTA ACAATATGATGTCATGGAATCAAGTATTACATTTAATTGACTGATTTTGAATGTGGTTCTGCAGAAACAT TTTTTCCAAACGCTTTTTTTTTTCACATTTCATGTTTATGATTTGAAACATGTTTACATTTGATTTAACG CAAACATGATTCTGCAGGAACGTCTCACAAAATGTGTTTCAAATCCTGATTCTTGGGTAAAAGAGTGGTG TATAAACAACCCTAATCAAGCATGTCAAAGGCCAATGAGTAAATTTGATATGAGATCTCAAGATTCATGA TCAGCTGGCGACTTTGATATTTTGTTAAAAAAGGAACCTTGTAATTTGAATTTTGCTTGCAATTTCTCTG TCTTGTTTCCCCTCTTTTTTCTCAAATAATTTTCAGGATGGACTTCAATTGGGTACTAGTATTCATTTAA ATATCATCTTGCAATGCAAGAATATTAGTTTGATAGATGTAGTGTAGTTTACTGTTTTTGGAGTGTTAGA TGATTCTTTTTTTTCTTGAAATGTTATTTCATGATGATGTTGAATAACTAGGCAGCCTTTTGGTGACACA AGTATAAGAGACATTTAAGAATGAAGCAAAATAGGAGACATTGTTTTTTTCCTGTTGTAGTATACTCTTT TCATATCCATTCAGTTGTGGGAAGATATGAAAATTATTTAATATTTTCATAGACTGTAAAAAGATATGTA AATAGCCATTTCAATTTTTGTACTCGAGTATCAATTAAGCTTCTAAAGGTCTTGAACTCTTACTTTAAAA CACTATTTATCAAGAATTTTAGCATGAACATTTCATCAGTGAATCCGCTTCTAGGATTAGTGAGAAATTT GATTGCATTTTATCTAAATGCCCCTGTGTGTTGTTAGAAAAGCAACAATTACAAAATCATTTTCTGTGTA GACAAGTCAAGGTGTATATGGTTTGGCCTCAAAGTTTACTATACAACAAAGATTTTTGAAAAGCAGAATT ATCTTAACTTTTTTTGCTTACTTATGACTTTGGAAAGACCGACAAGTTCTCTGATAAATACATTCATCAG ATATCAAGTAAAGAATCTGTGGAATTGGGGAAAATGTGAATGAACGTCTATCTCTGTGGGTTCTCATCCT ATTGCTATCGTGGGCAGAATTAAAATGAACGATTTATGTGTAACTAGCATTTATCACAATTTTTTGTAAA CTGTTTCCAGTTGAAAATCAACTGCCTTTAGATTTACACATTTTACCTCAAGTAGCAGAATTTGATCAAA CCAAAACACTGAACTGGTAGCTAACTCACCTAACAGGCTCAAGAATACTAAGAATGAATTACCAATGTTT TAAGTACCTGTGTAAGTTATTGATAGTAGAGATCAAAGTAAATGTGGATAGCCTGAGAGAATATTTCATT TAGGCACCCTACTAAAAATCTTTTATCAGGAATCCTTTGTAGGCTTTTTTAACAATGGTGTTGTAGCAAA CCCAACTGATTTGTCTATGATGAAGATTAAAGATGGGAAACATGTAGGATAGGGGTATGAAACAAGATAC TGACTTTTAGTAGGGTGCCTCTATTGATGTAGTGCGGATGCAACTTCTTAATGGTCTGGAAACTGTTTTT TTTTCTCTTTGTGTGTTCAAGTCAAAAGGATGAGAAAAAAAATGGAGCTGAAAAAGTTCTAGTTATTTTT TATTCAGTCCTTAACTTTGACATGTACGATTTCCTTAGGTGGCTGGAATTTCATTTTTCTGAAGACTTAA GAAACTGAAAATAAAACAAGGATATATGAATGTAAATATTTATTCAATATTAAAGTTTTTGAAAAGGAAA TGGATAAGAAACAATGTCAATATCCTTTATTCCATATCAAAGAAAACTGTCATAAAAATGTCAGTGTTTA AGACATTGTACTTGAAAACTTTTCATTAACAAAGCCTGATTGAAGAAACAAAATGCATCTGCATGAATCC AATGCAATTTCTCATCTTTGCTCTTAAACTCTCTTCTTCACATAGGCTTTGTATCACCTGGTTCTGTTAA GCAGTAGATGTTTATGACTGAACTATGTGATTCATATTGTACATGTACAACACAGTTCCAGTAATGGTTA ACATGCTATACTACATTTCAAGAGGTTACAAGATTAATCAACAGAAAGTGATGGATAATAAATGGTTGAG GACCAAAATTCTCTTAATTTCTTTGTGAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
