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Echinobase Accession
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Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_003727135.3 PREDICTED: Strongylocentrotus purpuratus bromodomain adjacent to zinc finger domain protein 1A (LOC577837), transcript variant X2, mRNA TACACACGATCATCGTGATAGCGCGCCACCTCGACAAGTGTATTTTTCTGAATCTAAGTGAAGTACGGGT AGCAAATTTTGAAATACAGATTGTGAAACTTCTACATTTTTCCAGTTTTGACAACTGAGAGGAATTTTAA CAGTTGGATAATACAAATGATCGTTGGGAGTTGAACTGAAGCTTGTCGTATGTTCCCCGGTCTGAACAAA AATGCCTTTACTTCGTCGTCGAGAATTTCGACCTGTGAAATTACCCAAAGAGTTGAAACCGACGGAGGAA GTATTCCTGTGTCGACTGACAAATGAAATCTTCAGAGATTATGATGATTTCTTCAAGAGAACCATTCTTT GTAATAGTCTGGTATGGAGCTGCAGTCTGACTGGACGACCAGGTCTTACCTACCAAGAGGCTTTGGAGAG TGAAGAGAAAGCCCTCAAGTTCCTCTCCAGCTTTCCTGTGTATCTGGAGACACCGGTACTCCTTCTTGCT CGGATGACCAAGCGAGGCAGATTGGCTGACCTGTGTGAGGACATCTTTGCCTTTGTGAAGGACCGTTTCT TTGTTGGAGAGATAGTGGATGTAGTCCACTTGGACACCAGAGAGACATGCAGGGTGAATCGAGTGATCGT ACCACCTGAATACATGGAGGAAGTAGGCGTGTCGTCTGAGAGCAGTGATGATGAAGTCATCTTCATCAAG GATGATGGAAAGGAAGAGAAACTTAACACTTCTCATGGAGACCAGAAGACTCCCAAAAGGACTTTGAAAT CCCAGATGCTAAAGCCAGCCATGTATAGATATGAGGTGACTTCCCTTCAGGGTTCTGGGACGTATATTGC ACCTCATACCAACGTCAGTCGCAAGAGAGGGCTGTTCACCAAGGAGAAGAATAAACTATACCTGAAGCAT CACTGTAAGGTGATAGACTTCATCTGGAGTGTCAAGCCTCAATATGTTGACAAGTTCCAGCTGGACAAGA AAGCATTTGGGGAGTTGTTTGCAGGTCCTTTGCCAAACTTCTCTTCTACTCCTGCTAAGAGGAATGTACA CAAGGTCATGGAAGAATCAGAAGCAGGATCATCTGCCAATGATGACACAACGGATGATGATGATGAGGAG GATGAAGAGGATGATGATGACGACCTCCCACTCATGGAAGTGAAGAAGAAGGCCGAGGCAAAGATGGGCA AGAAGAAGAAAAGAAAGAACAAGGGTGCTAACAAAGAGAACCAAGTAGCTCAGTCCAAACTGAGCAAAGA AGAACGAGCTGAACTGAAAGAAAAGATGAGAGCAGAGAAGCTAGCTGAGAGGCTGGAGATGAGACAGAAG CAGGCAGAGGAAAGGGCACTGGAGAGGGCTAAGAAATGGGAGGAGCTTGCCAAACTCAAAGAAGAACAGA AAGTACAGCGAGAAACAGAAAGGCTAGCCAGGAGAGAACAAATGAGAAAGGATATTGAGGAAAGCAAGGA AAGGAGAAGAAAGGAAAAAGAAGAGGAAAGAGAACGTCAGAGAGCCTATTACATTCATATGAAGGAATAT ATGAAACCAAGAGAAGACTTAGAATGTGAAGACCAGAAGGATCTACCTGAGCCAGTTCCTTTATCAGGAA AGATCCCTCAGGAGTTTTTTGGAGACTGTGTTTTGCTCTTGGAATTCCTACATGCATATGAGGAAGAGCT TGGACTTCAAGAAGACTTCCCTGAAGGTGTCACTTTAGAGCTGTTAGCAGATGCAATAACAACCAACAAA GTGGATGGAGCTATGTTTGAAATCACAAGGTTCTTATTGAAAGCTCTCTTCAGAGTTCAAGAAGAAGATG AGGAGGAATGGAAGACAGACTTGGAGGAACAAGGAATACAAGTACCCAAATTGAATATCTGTGAAGCAAG GTTAGAAGAAGACCCAGATCCAACGTATGGAGCTATGAGTAAAGCAGCTACAGCAGCTCTTGCTTGGCCA GTGCTTCATCAAGGTACTGAGCTGAGGAAGCTATCGATCGATCCTCCGACCCTGACAGAGATTGTACGGC TTCACTTCTTGTCTTCTGGATCCACCACAGGATCTGAGGATTCTAAATGGCGTTACCAGCAGAGAGGTGG TTATACGTGCCGTGATGATCCTGGGTTAGAGTTCCGTATGCAGGAATCAGCAATCCTCAAAACCCTCACC AAGGGAAACCTCTATGACCTCAGTTCAGAAGGTAAACTGAAGGTTCTAACTGCTCTGACCAATCAGCTAC TGACGTATGTGACTATGCGTGAAGTCATTGAGGATAGCTATGATACTTGGAATACGACTCGCAGGGAACT ACGAGATCTTCTACGTCTCGAACAACGTCGAGAAAAGGAGGAGGTTACTGCAAAGTGGAGGTTGAGAATG GAGGAGAGGGTTAATGAGAAATTCCAAGTTGAGAAGGATAGGCTTGCTAAGATATCACAGGAAGGTGTTA TAGAGAATGGGGTGACTCCTGGTGTGAGTAGCTCTAATGTAAGCACTCCAGAACAACCAGGAAGTAGACC TCAGTCTAGAGCTAAAGGGGAATCCCCCAATGACTCTATGGAGACATCAGACATCCCTACACCAGGGATG TCTCTTGCTGACATCGAGAAGAAGAGGAAAGAGATGGCAGAGGAAAGTGCTGAAAAGAAAGCTGAGTCTA TACAGCAGGAAGCACAGCTGACAAGGGAGATCAATGAAGCCATTATGAAGTACAATGTAACCCCGATCGG AGAAGACAGATTCTTCCGCAGATACTGGAAGTTCAATTCATTACCAGGATTATTTGTGGAGTGTGATCGG AATGTTGATGAAGATGTGCTTAAGAAGATGGAAGAAGACATGTATGCCGTGCAAAGAACTAAAGTTGAAA ATATGGATGCTCCTGAAGAAATTCAGCCAACGAACGAGCACAATACCTCAAATAGCAGTAACAAGGAAAA CGTGGACAGTAATGTAATAGGGAATGGAGCGGTTACAAATGGAGATGTGCCTTCAGAATCTCCTAAAGAC CTCACAGATGGTGAGAAGGAGACCCCTATGGAGGTCAATGATGTAGAAATGCCTGTACTTCGTGTTGAGG TTTCTTCTACAGGGCCAACACCAGCTGCTTCACAGTGTCAATGGGCTTTCTATAATGAACCTAGTCAGAT TGACAAGCTCTTAGAAGCTCTGAACACACGTGGTCTCAGGGAAGCATCTCTCAGAGATAGCCTTCAACAG GACAAGGCTGCTATAATGGGCCGTATGAGTGAAGTACCCACAGACTTCCTAACTAAACCTCCAACAGACG AAGCAGATATGGATTACCAACCTGGAGTCAAGAAACAAGTGGAGGTTAAGATGACTAGTGGCAAGAAGGG CCTCTTGTCTAACAGTGCTGATGGGGATGAGAAGCTGGAACTTATGCTCAGGGAACAGATTCTGGACATC GAAGACCGTCTGTGGCAGGGAGCTTTAGGCTTTGTCAAGGTGAATGACCGAGCATCTTGGGTAGAAGCCA TCGAGCAGGGATCTTATGATCGGCAGTGTAAGGAGATCTCCTGGGGGCCTGTCTGGGCACGTTCTATGTC AGATGATGGTGACTTTCTTAACCTGTCATTGTCTGATCTACCACTACCTGAGGAGAAACCCAAGACAAAG GACAGATTGACCTCTCTCAAGAAGGGGGATGCCGGTCCTACAGGTTCCCCAGCCTCTACCCGATGTAACA CACCAGACCTAGCTGATAATGTGGTGAGAGATCTAGCTTGTTCTCTACTGCAGGTATCCCAAGGTACAGA CATCAAATACCTCAAGGCACCACTGGGAAACCCAGAAGAAAACAAACCAATGACAAGAACAAGGAAGAAG CAAGAGGAAGAGAAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAGAAGAAACCGAAGAAGACTTGTCGTG AGTGTTGGGAGGAATCATTGATGGCTTGTACCAGCCTGTCTCAGATCTTCCTTCATCTCTCAACCCTTGA ACGATCAGTCACATGGAATAAATCTATCTTGAAGGCTCGTTGCAGGATGTGCCGTCGTGGTGGCAACCCT GAAGCTATGTTGCTGTGTGATAGCTGCAACAGAGGCCACCACATGTTCTGCCTCAAACCCCCTCTCAAGA AAGTTCCAAAGGGGGAGTGGTTCTGCAAAGACTGCGCCCCTAAACAAATCAAGAGGAGCCCTCATAAACA GAGAGCTAAGAAGAAACCAGTCGTAGTGGAATCATCTAGTGAGGAGGAGGAAGAAGAAAGTGAAGATGAC TCAGAGGAGGAAGAAGAAACCCAAGAAGAGGAGGAAGTGGAAAGTGAAGAAGAGGAGATGGAAGTTGATG TTTCTGAAGAAGAAGAGGAGGAGGATGAGGAAGAAGATGAAGAGGAGGAGGAAGATGAAGAGGAGGATGA AGAAGATAATGAGAGGAAACTGGATGCCATGAACCGTGTAGCTCGTAGGGGACTCGGTGCTCTTGATCAC AATGAGCTATGTCAGTCATGTGGACATGCTGGCCAGCTCATACTCTGCCATGACTGCCCTATAGTCTACC ACTGTGAATGCCTAGATCCTCCCCTAAGTAAACTTACCCAAGATCACTGGTTCTGTCCACTATGTGTCAT GGATCGTACCACCAACGGTGCTGACTCTGAGGAGGAAATGGGAAGCAATGATGGTGAGATAGAACATGAG GATGTTTGCTCTCGATGTCGTCATGGTGGTGAGCTGATATGTTGTGATACCTGTCCCAAGGCTTTCCATA TGGAGTGCTGTAAGCCAGTCCTACGCAAGGTGCCTAAAGGACATTGGGAGTGTGAGAACTGCAAGAAGGG AACCAAGTCTGCTGCTATCAGAGTACCAACAGGCCCAGCTAAGAAGTTTAGCAGCAAACCTGCCAAGAAG GAAAGTCCTAAGACCCAGCCCAAGGCTCAGGCTCAGGCTCAGGAGAAGACTGGCTCAAGGAGCAGATCTC AGAGTAGAGGAAGACAGTCAAGACAAAACACACCAGAACCTAACCAATCAAACAAGACTTCAAAGAAAGA TGCTCAACCTATCTCAGGCTCTAGTGGCAAGAAGAGCCAACTAAGCTCTCAAGATAAGAAGGGACAACAA TCTTCATCGTCTCAGGAGAGCAGAGGCCGGTCAAAGGTACAGGAGAAGGGAGGTCGAGGGTCATCTCTAG ACAGGAGGGGTCAGAAGAGGGGCATGAGTATGGAATCTACAGACTCTGAGTCATCACAGGAAGAAGTTCA GAAGAAAAAGAATTCTGGGAGAAGTCTCTTCAAAGTAGCTCTCAATGGAAGTCTGAATGCAGATGATTCC GCTTCCGATTCTTCAGGACCATCAGCCAAGAACCGCAGGACATCCAGTGGGCGTGGTAGGGGTGATTTGA CTCAGCTTAATAAATGTGAAGCATTACTGAAGGAACTCATCAAACATCCAGATGTTCGTCCATTCCTCAA TGCTGTCAGCAAGAAAGCGGCCCCTGACTACTACCGCATCATCAAGCGTCCCATGGACTTTGCATCCATG CAGACCAAAGTCAATGACTACCAGTACTCTAGCGCAGCAGAGCTTATCGCTGACGCCAGACTCATCTTCA CCAACTGTCAGCAGTACAACCGGCGTTCTAGCTCTGAATACAAGGCTGGTCTTAAGATGTCTACCTTCCT TGAGAAGCGTATTAAGGAGTCAGACATTGAGGTTAGTCTTGAAGACGGTCCTACCGACCAGGATACACCC ACATCAAGGAAGAGCTCACGACAACGATAAATCTTCAATATCTCAGGATGCCGTGTGTTTTCTCTTTGTT GATGTTAATAAGATTGTGAGTTTGTTGTGTTGGGTTATTTATGATTGCCTTTTCAGTTGGTTTTGCAAGA GCAGATTCTATTTTCTTCTGCATGTTCCTGGTCTAGAGTGATGAGCTATAAAGGTATATGCGGTCGTCTT TTCCAGAAAAGACCTATGGCTTACCTGTGTTAAGGTCATGAAGTAAAGTTTGATTTTTGACATCATTTCA ACAAGTTAATGTGACTTTTGTAAAGTTATTCATTTGTTTTGCCCCACTTTTACCAGAATCACTATAAGTG ATTGTGGGATTTTCTTGGAGAGAAATCAGTCATTATAATTTTCTTATATTCAAGAGTGTAGTATGCTGTA CCGTAGTCATTATTATAGTTTTCTTAGTTTTATCAGTTTTATATGGTGGTATGAATTTTCTACTAAATAT TGAGAAAAAAAATTAACAAAAAACATGTAGTATAAGAAAATGAAATTTGCTGTAAATATAGTGTTGATGA GGTTACTAGCATGCTTACAGACAAAGGTGTTGCAGCATTTGAAAGTGAATGTATTTATTGGATATTTGCT TTGAGAAGCCCTGTTCTGTGGAAAGTAATATAAATTAACCAAGATTGGTTATGTTACACATTTCTTTAAA AACTAATTTGTCCTGAGACCTTGAGTAATTTAAGTCATTTTAATATTTAATACAATTTAAGTTCAATTGG AAAGGCCTTTACATAGGATGAAATTTGTTTCTACATGCTTGCATGCTTATGATATTGACATGTCGTAATA AGTTGTAATCTCTGTGTACTTTACGTGTTAAGAAGTTATCATTCTGATAATAGCATGTTGATGAAACAAG GCTTGGTATCAATACACTTTGATAGAAGCAACATTGAAGATAGCTATATTGTCATTTTACCTCTTCTACA TTAGATTGAGGGATGTATTCTTCATAGTAGTTCATGTGTACAATGGAAGGCTAATCTTATTTCATGATTA TATAGAAAGAGGTTATCCCAGATCAACTTTAAAACAAAATTAAAAAAATAAAAACGAAAATAAAGCATTA AAGAAAAGAAAATGTCTTCCTTTTTGTATACAAGAGGCACTGTAGGAACAACCTTTTTTTTTCTTTCTCT CTTTCTCCGTTATTTTGTTAATATTATAAATAGTTGAGTATAAAGTGCCCTCTATTGTTAATGCTTCTCA ATATGGTGTGGTATCGCAGCACAAGAATGGTTGTAGATGTAGTTAGTGTAGTTTAGAGCTTTGCCTGTAC TAGGTGTATTTTCTTTCTTTTAATTTCACCTCTATTTCATTTTGATGGTGACAAAAAAACAAACATTGGA TACAAATACTCATAATGTTGAATATTGCTCTCCATTGTTTTCAAGTTTGGGGAAGATTTGAAAATTATTT AATATTTTCATAGACTGTAAAAAGATCTGTAAATAGTCAATTTTTTGTACTCCAGTACCAGTTGAGCTTC TCATCCCTCTTTATCTAAAGGTCCTTGCACTCCTGTTGTAAACACTATTTACCAAGATTTTTATTCCAGA AAATCTGTTGTATATGATTCAATTTTCAAGATTGGTAAGATAGTAATATGATTGCATTTCATGTAAATGT CCCTATGTGTTGCCGTCACTATAGATGTACCTTACATTTAATGGGAATAAGTCAGGTTCTTAAGGGGTAT ACCTCTGTTTCTATTAACTCCACAGACTGCTTGTATTTCCCATTACATTTTGAATGATTCAAAGTAAAAT TGCAATTGTAAGCATTTATATGCATCTACATTTTGCAGATAATATAGAAGATCAAACAGATACATGCAGT GTAGATAATTCTACCACGGTAAATACATGTAACTTATCCAGCCACAATAGTAGAAATGCTTAAATAAAAA TTGGTTGTCATTTTGGTTTGTTTTTGTTGCTGGAAATTGATAGGGCCTATGCGTAATGAAAACAAAAAAA AGGCAACGACTTGAAGAAAAAAAAAAAATCACATTATGACAGGTCTAGTTCAATAGGTAGGAAGTGAATA TACATGTATAGTTACTTTCTTTCATATCAATGAAAACTTTATTTTGCAAAACAATGTAACATTATAGATC TTGCATTTGTCCCTCTAAAATGTTCACTGAACTAAGATGAGCGGTTATTGCCGAACATGTACACCATGCA CGGACAGACACACACACACCACCATACAACCCTATTAACCCAACACAATCAAATATATGTTGTTATCAAA ACTCTGAAAATTATTCACTGTACATCTATTTTCTGAAATCCAGATGGTTTTTTAGGGTTACCAAACATAG CACATGCATTCAATGGAAAGTCATTTGGCATGTTTTCTTCTTTTTTTTGGGGGGGGGGGGGGGGGGGGGC TTTGTTTGTTTGTTTTTATTTTTGGTTTCCAGAACTCGACCTGCCCTGTGTGGATTAATTCAAATTCCCA TTTGCTGTTTAGAATGTTGTGTGGGTCTAGGGCTATTTAAAACGTTGTGTGGGTCAGGGGCTATTTAACA GTCACATGTTGTTAGACATGACGAGAGGTTATTGAGATTGATCAGCAGAATCGCTGGACAATAAAGAATG GTTGAGGACCAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
