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Echinobase Accession
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Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_011681784.2 PREDICTED: Strongylocentrotus purpuratus bromodomain adjacent to zinc finger domain protein 1A (LOC577837), transcript variant X1, mRNA TACACACGATCATCGTGATAGCGCGCCACCTCGACAAGTGTATTTTTCTGAATCTAAGTGAAGTACGGGT AGCAAATTTTGAAATACAGATTGTGAAACTTCTACATTTTTCCAGTTTTGACAACTGAGAGGAATTTTAA CAGTTGGATAATACAAATGATCGTTGGGAGTTGAACTGAAGCTTGTCGTATGTTCCCCGGTCTGAACAAA AATGCCTTTACTTCGTCGTCGAGAATTTCGACCTGTGAAATTACCCAAAGAGTTGAAACCGACGGAGGAA GTATTCCTGTGTCGACTGACAAATGAAATCTTCAGAGATTATGATGATTTCTTCAAGAGAACCATTCTTT GTAATAGTCTGGTATGGAGCTGCAGTCTGACTGGACGACCAGGTCTTACCTACCAAGAGGCTTTGGAGAG TGAAGAGAAAGCCCTCAAGTTCCTCTCCAGCTTTCCTGTGTATCTGGAGACACCGGTACTCCTTCTTGCT CGGATGACCAAGCGAGGCAGATTGGCTGACCTGTGTGAGGACATCTTTGCCTTTGTGAAGGACCGTTTCT TTGTTGGAGAGATAGTGGATGTAGTCCACTTGGACACCAGAGAGACATGCAGGGTGAATCGAGTGATCGT ACCACCTGAATACATGGAGGAAGTAGGCGTGTCGTCTGAGAGCAGTGATGATGAAGTCATCTTCATCAAG GATGATGGAAAGGAAGAGAAACTTAACACTTCTCATGGAGACCAGAAGACTCCCAAAAGGACTTTGAAAT CCCAGATGCTAAAGCCAGCCATGTATAGATATGAGGTGACTTCCCTTCAGGGTTCTGGGACGTATATTGC ACCTCATACCAACGTCAGTCGCAAGAGAGGGCTGTTCACCAAGGAGAAGAATAAACTATACCTGAAGCAT CACTGTAAGGTGATAGACTTCATCTGGAGTGTCAAGCCTCAATATGTTGACAAGTTCCAGCTGGACAAGA AAGCATTTGGGGAGTTGTTTGCAGGTCCTTTGCCAAACTTCTCTTCTACTCCTGCTAAGAGGAATGTACA CAAGGTCATGGAAGAATCAGAAGCAGGATCATCTGCCAATGATGACACAACGGATGATGATGATGAGGAG GATGAAGAGGATGATGATGACGACCTCCCACTCATGGAAGTGAAGAAGAAGGCCGAGGCAAAGATGGGCA AGAAGAAGAAAAGAAAGAACAAGGGTGCTAACAAAGAGAACCAAGTAGCTCAGTCCAAACTGAGCAAAGA AGAACGAGCTGAACTGAAAGAAAAGATGAGAGCAGAGAAGCTAGCTGAGAGGCTGGAGATGAGACAGAAG CAGGCAGAGGAAAGGGCACTGGAGAGGGCTAAGAAATGGGAGGAGCTTGCCAAACTCAAAGAAGAACAGA AAGTACAGCGAGAAACAGAAAGGCTAGCCAGGAGAGAACAAATGAGAAAGGATATTGAGGAAAGCAAGGA AAGGAGAAGAAAGGAAAAAGAAGAGGAAAGAGAACGTCAGAGAGCCTATTACATTCATATGAAGGAATAT ATGAAACCAAGAGAAGACTTAGAATGTGAAGACCAGAAGGATCTACCTGAGCCAGTTCCTTTATCAGGAA AGATCCCTCAGGAGTTTTTTGGAGACTGTGTTTTGCTCTTGGAATTCCTACATGCATATGAGGAAGAGCT TGGACTTCAAGAAGACTTCCCTGAAGGTGTCACTTTAGAGCTGTTAGCAGATGCAATAACAACCAACAAA GTGGATGGAGCTATGTTTGAAATCACAAGGTTCTTATTGAAAGCTCTCTTCAGAGTTCAAGAAGAAGATG AGGAGGAATGGAAGACAGACTTGGAGGAACAAGGAATACAAGTACCCAAATTGAATATCTGTGAAGCAAG GTTAGAAGAAGACCCAGATCCAACGTATGGAGCTATGAGTAAAGCAGCTACAGCAGCTCTTGCTTGGCCA GTGCTTCATCAAGGTACTGAGCTGAGGAAGCTATCGATCGATCCTCCGACCCTGACAGAGATTGTACGGC TTCACTTCTTGTCTTCTGGATCCACCACAGGATCTGAGGATTCTAAATGGCGTTACCAGCAGAGAGGTGG TTATACGTGCCGTGATGATCCTGGGTTAGAGTTCCGTATGCAGGAATCAGCAATCCTCAAAACCCTCACC AAGGGAAACCTCTATGACCTCAGTTCAGAAGGTAAACTGAAGGTTCTAACTGCTCTGACCAATCAGCTAC TGACGTATGTGACTATGCGTGAAGTCATTGAGGATAGCTATGATACTTGGAATACGACTCGCAGGGAACT ACGAGATCTTCTACGTCTCGAACAACGTCGAGAAAAGGAGGAGGTTACTGCAAAGTGGAGGTTGAGAATG GAGGAGAGGGTTAATGAGAAATTCCAAGTTGAGAAGGATAGGCTTGCTAAGATATCACAGGAAGGTGTTA TAGAGAATGGGGTGACTCCTGGTGTGAGTAGCTCTAATGTAAGCACTCCAGAACAACCAGGAAGTAGACC TCAGTCTAGAGCTAAAGGGGAATCCCCCAATGACTCTATGGAGACATCAGACATCCCTACACCAGGGATG TCTCTTGCTGACATCGAGAAGAAGAGGAAAGAGATGGCAGAGGAAAGTGCTGAAAAGAAAGCTGAGTCTA TACAGCAGGAAGCACAGCTGACAAGGGAGATCAATGAAGCCATTATGAAGTACAATGTAACCCCGATCGG AGAAGACAGATTCTTCCGCAGATACTGGAAGTTCAATTCATTACCAGGATTATTTGTGGAGTGTGATCGG AATGTTGATGAAGATGTGCTTAAGAAGATGGAAGAAGACATGTATGCCGTGCAAAGAACTAAAGTTGAAA ATATGGATGCTCCTGAAGAAATTCAGCCAACGAACGAGCACAATACCTCAAATAGCAGTAACAAGGAAAA CGTGGACAGTAATGTAATAGGGAATGGAGCGGTTACAAATGGAGATGTGCCTTCAGAATCTCCTAAAGAC CTCACAGATGGTGAGAAGGAGACCCCTATGGAGGTCAATGATGTAGAAATGCCTGTACTTCGTGTTGAGG TTTCTTCTACAGGGCCAACACCAGCTGCTTCACAGTGTCAATGGGCTTTCTATAATGAACCTAGTCAGAT TGACAAGCTCTTAGAAGCTCTGAACACACGTGGTCTCAGGGAAGCATCTCTCAGAGATAGCCTTCAACAG GACAAGGCTGCTATAATGGGCCGTATGAGTGAAGTACCCACAGACTTCCTAACTAAACCTCCAACAGACG AAGCAGATATGGATTACCAACCTGGAGTCAAGAAACAAGTGGAGGTTAAGATGACTAGTGGCAAGAAGGG CCTCTTGTCTAACAGTGCTGATGGGGATGAGAAGCTGGAACTTATGCTCAGGGAACAGATTCTGGACATC GAAGACCGTCTGTGGCAGGGAGCTTTAGGCTTTGTCAAGGTGAATGACCGAGCATCTTGGGTAGAAGCCA TCGAGCAGGGATCTTATGATCGGCAGTGTAAGGAGATCTCCTGGGGGCCTGTCTGGGCACGTTCTATGTC AGATGATGGTGACTTTCTTAACCTGTCATTGTCTGATCTACCACTACCTGAGGAGAAACCCAAGACAAAG GACAGATTGACCTCTCTCAAGAAGGGGGATGCCGGTCCTACAGGTTCCCCAGCCTCTACCCGATGTAACA CACCAGACCTAGCTGATAATGTGGTGAGAGATCTAGCTTGTTCTCTACTGCAGGTATCCCAAGGTACAGA CATCAAATACCTCAAGGCACCACTGGGAAACCCAGAAGAAAACAAACCAATGACAAGAACAAGGAAGAAG CAAGAGGAAGAGAAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAGAAGAAACCGAAGAAGACTTGTCGTG AGTGTTGGGAGGAATCATTGATGGCTTGTACCAGCCTGTCTCAGATCTTCCTTCATCTCTCAACCCTTGA ACGATCAGTCACATGGAATAAATCTATCTTGAAGGCTCGTTGCAGGATGTGCCGTCGTGGTGGCAACCCT GAAGCTATGTTGCTGTGTGATAGCTGCAACAGAGGCCACCACATGTTCTGCCTCAAACCCCCTCTCAAGA AAGTTCCAAAGGGGGAGTGGTTCTGCAAAGACTGCGCCCCTAAACAAATCAAGAGGAGCCCTCATAAACA GAGAGCTAAGAAGAAACCAGTCGTAGTGGAATCATCTAGTGAGGAGGAGGAAGAAGAAAGTGAAGATGAC TCAGAGGAGGAAGAAGAAACCCAAGAAGAGGAGGAAGTGGAAAGTGAAGAAGAGGAGATGGAAGTTGATG TTTCTGAAGAAGAAGAGGAGGAGGATGAGGAAGAAGATGAAGAGGAGGAGGAAGATGAAGAGGAGGATGA AGAAGATAATGAGAGGAAACTGGATGCCATGAACCGTGTAGCTCGTAGGGGACTCGGTGCTCTTGATCAC AATGAGCTATGTCAGTCATGTGGACATGCTGGCCAGCTCATACTCTGCCATGACTGCCCTATAGTCTACC ACTGTGAATGCCTAGATCCTCCCCTAAGTAAACTTACCCAAGATCACTGGTTCTGTCCACTATGTGTCAT GGATCGTACCACCAACGGTGCTGACTCTGAGGAGGAAATGGGAAGCAATGATGGTGAGATAGAACATGAG GATGTTTGCTCTCGATGTCGTCATGGTGGTGAGCTGATATGTTGTGATACCTGTCCCAAGGCTTTCCATA TGGAGTGCTGTAAGCCAGTCCTACGCAAGGTGCCTAAAGGACATTGGGAGTGTGAGAACTGCAAGAAGGG AACCAAGTCTGCTGCTATCAGAGTACCAACAGGTAACAAAGGCCCAGCTAAGAAGTTTAGCAGCAAACCT GCCAAGAAGGAAAGTCCTAAGACCCAGCCCAAGGCTCAGGCTCAGGCTCAGGAGAAGACTGGCTCAAGGA GCAGATCTCAGAGTAGAGGAAGACAGTCAAGACAAAACACACCAGAACCTAACCAATCAAACAAGACTTC AAAGAAAGATGCTCAACCTATCTCAGGCTCTAGTGGCAAGAAGAGCCAACTAAGCTCTCAAGATAAGAAG GGACAACAATCTTCATCGTCTCAGGAGAGCAGAGGCCGGTCAAAGGTACAGGAGAAGGGAGGTCGAGGGT CATCTCTAGACAGGAGGGGTCAGAAGAGGGGCATGAGTATGGAATCTACAGACTCTGAGTCATCACAGGA AGAAGTTCAGAAGAAAAAGAATTCTGGGAGAAGTCTCTTCAAAGTAGCTCTCAATGGAAGTCTGAATGCA GATGATTCCGCTTCCGATTCTTCAGGACCATCAGCCAAGAACCGCAGGACATCCAGTGGGCGTGGTAGGG GTGATTTGACTCAGCTTAATAAATGTGAAGCATTACTGAAGGAACTCATCAAACATCCAGATGTTCGTCC ATTCCTCAATGCTGTCAGCAAGAAAGCGGCCCCTGACTACTACCGCATCATCAAGCGTCCCATGGACTTT GCATCCATGCAGACCAAAGTCAATGACTACCAGTACTCTAGCGCAGCAGAGCTTATCGCTGACGCCAGAC TCATCTTCACCAACTGTCAGCAGTACAACCGGCGTTCTAGCTCTGAATACAAGGCTGGTCTTAAGATGTC TACCTTCCTTGAGAAGCGTATTAAGGAGTCAGACATTGAGGTTAGTCTTGAAGACGGTCCTACCGACCAG GATACACCCACATCAAGGAAGAGCTCACGACAACGATAAATCTTCAATATCTCAGGATGCCGTGTGTTTT CTCTTTGTTGATGTTAATAAGATTGTGAGTTTGTTGTGTTGGGTTATTTATGATTGCCTTTTCAGTTGGT TTTGCAAGAGCAGATTCTATTTTCTTCTGCATGTTCCTGGTCTAGAGTGATGAGCTATAAAGGTATATGC GGTCGTCTTTTCCAGAAAAGACCTATGGCTTACCTGTGTTAAGGTCATGAAGTAAAGTTTGATTTTTGAC ATCATTTCAACAAGTTAATGTGACTTTTGTAAAGTTATTCATTTGTTTTGCCCCACTTTTACCAGAATCA CTATAAGTGATTGTGGGATTTTCTTGGAGAGAAATCAGTCATTATAATTTTCTTATATTCAAGAGTGTAG TATGCTGTACCGTAGTCATTATTATAGTTTTCTTAGTTTTATCAGTTTTATATGGTGGTATGAATTTTCT ACTAAATATTGAGAAAAAAAATTAACAAAAAACATGTAGTATAAGAAAATGAAATTTGCTGTAAATATAG TGTTGATGAGGTTACTAGCATGCTTACAGACAAAGGTGTTGCAGCATTTGAAAGTGAATGTATTTATTGG ATATTTGCTTTGAGAAGCCCTGTTCTGTGGAAAGTAATATAAATTAACCAAGATTGGTTATGTTACACAT TTCTTTAAAAACTAATTTGTCCTGAGACCTTGAGTAATTTAAGTCATTTTAATATTTAATACAATTTAAG TTCAATTGGAAAGGCCTTTACATAGGATGAAATTTGTTTCTACATGCTTGCATGCTTATGATATTGACAT GTCGTAATAAGTTGTAATCTCTGTGTACTTTACGTGTTAAGAAGTTATCATTCTGATAATAGCATGTTGA TGAAACAAGGCTTGGTATCAATACACTTTGATAGAAGCAACATTGAAGATAGCTATATTGTCATTTTACC TCTTCTACATTAGATTGAGGGATGTATTCTTCATAGTAGTTCATGTGTACAATGGAAGGCTAATCTTATT TCATGATTATATAGAAAGAGGTTATCCCAGATCAACTTTAAAACAAAATTAAAAAAATAAAAACGAAAAT AAAGCATTAAAGAAAAGAAAATGTCTTCCTTTTTGTATACAAGAGGCACTGTAGGAACAACCTTTTTTTT TCTTTCTCTCTTTCTCCGTTATTTTGTTAATATTATAAATAGTTGAGTATAAAGTGCCCTCTATTGTTAA TGCTTCTCAATATGGTGTGGTATCGCAGCACAAGAATGGTTGTAGATGTAGTTAGTGTAGTTTAGAGCTT TGCCTGTACTAGGTGTATTTTCTTTCTTTTAATTTCACCTCTATTTCATTTTGATGGTGACAAAAAAACA AACATTGGATACAAATACTCATAATGTTGAATATTGCTCTCCATTGTTTTCAAGTTTGGGGAAGATTTGA AAATTATTTAATATTTTCATAGACTGTAAAAAGATCTGTAAATAGTCAATTTTTTGTACTCCAGTACCAG TTGAGCTTCTCATCCCTCTTTATCTAAAGGTCCTTGCACTCCTGTTGTAAACACTATTTACCAAGATTTT TATTCCAGAAAATCTGTTGTATATGATTCAATTTTCAAGATTGGTAAGATAGTAATATGATTGCATTTCA TGTAAATGTCCCTATGTGTTGCCGTCACTATAGATGTACCTTACATTTAATGGGAATAAGTCAGGTTCTT AAGGGGTATACCTCTGTTTCTATTAACTCCACAGACTGCTTGTATTTCCCATTACATTTTGAATGATTCA AAGTAAAATTGCAATTGTAAGCATTTATATGCATCTACATTTTGCAGATAATATAGAAGATCAAACAGAT ACATGCAGTGTAGATAATTCTACCACGGTAAATACATGTAACTTATCCAGCCACAATAGTAGAAATGCTT AAATAAAAATTGGTTGTCATTTTGGTTTGTTTTTGTTGCTGGAAATTGATAGGGCCTATGCGTAATGAAA ACAAAAAAAAGGCAACGACTTGAAGAAAAAAAAAAAATCACATTATGACAGGTCTAGTTCAATAGGTAGG AAGTGAATATACATGTATAGTTACTTTCTTTCATATCAATGAAAACTTTATTTTGCAAAACAATGTAACA TTATAGATCTTGCATTTGTCCCTCTAAAATGTTCACTGAACTAAGATGAGCGGTTATTGCCGAACATGTA CACCATGCACGGACAGACACACACACACCACCATACAACCCTATTAACCCAACACAATCAAATATATGTT GTTATCAAAACTCTGAAAATTATTCACTGTACATCTATTTTCTGAAATCCAGATGGTTTTTTAGGGTTAC CAAACATAGCACATGCATTCAATGGAAAGTCATTTGGCATGTTTTCTTCTTTTTTTTGGGGGGGGGGGGG GGGGGGGGCTTTGTTTGTTTGTTTTTATTTTTGGTTTCCAGAACTCGACCTGCCCTGTGTGGATTAATTC AAATTCCCATTTGCTGTTTAGAATGTTGTGTGGGTCTAGGGCTATTTAAAACGTTGTGTGGGTCAGGGGC TATTTAACAGTCACATGTTGTTAGACATGACGAGAGGTTATTGAGATTGATCAGCAGAATCGCTGGACAA TAAAGAATGGTTGAGGACCAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
