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Echinobase Accession
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Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genes
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_778045.5 PREDICTED: Strongylocentrotus purpuratus bromodomain adjacent to zinc finger domain protein 1A (LOC577837), transcript variant X3, mRNA ACACACGATCATCGTGATAGCGCGCCACCTCGACAAGTGTATTTTTCTGAATCTAAGTGAAGTACGGGTA GCAAATTTTGAAATACAGATTGTGAAACTTCTACATTTTTCCAGTTTTGACAACTGAGAGGAATTTTAAC AGTTGGATAATACAAATGATCGTTGGGAGTTGAACTGAAGCTTGTCGTATGTTCCCCGGTCTGAACAAAA ATGCCTTTACTTCGTCGTCGAGAATTTCGACCTGTGAAATTACCCAAAGAGTTGAAACCGACGGAGGAAG TATTCCTGTGTCGACTGACAAATGAAATCTTCAGAGATTATGATGATTTCTTCAAGAGAACCATTCTTTG TAATAGTCTGGTATGGAGCTGCAGTCTGACTGGACGACCAGGTCTTACCTACCAAGAGGCTTTGGAGAGT GAAGAGAAAGCCCTCAAGTTCCTCTCCAGCTTTCCTGTGTATCTGGAGACACCGGTACTCCTTCTTGCTC GGATGACCAAGCGAGGCAGATTGGCTGACCTGTGTGAGGACATCTTTGCCTTTGTGAAGGACCGTTTCTT TGTTGGAGAGATAGTGGATGTAGTCCACTTGGACACCAGAGAGACATGCAGGGTGAATCGAGTGATCGTA CCACCTGAATACATGGAGGAAGTAGGCGTGTCGTCTGAGAGCAGTGATGATGAAGTCATCTTCATCAAGG ATGATGGAAAGGAAGAGAAACTTAACACTTCTCATGGAGACCAGAAGACTCCCAAAAGGACTTTGAAATC CCAGATGCTAAAGCCAGCCATGTATAGATATGAGGTGACTTCCCTTCAGGGTTCTGGGACGTATATTGCA CCTCATACCAACGTCAGTCGCAAGAGAGGGCTGTTCACCAAGGAGAAGAATAAACTATACCTGAAGCATC ACTGTAAGGTGATAGACTTCATCTGGAGTGTCAAGCCTCAATATGTTGACAAGTTCCAGCTGGACAAGAA AGCATTTGGGGAGTTGTTTGCAGGTCCTTTGCCAAACTTCTCTTCTACTCCTGCTAAGAGGAATGTACAC AAGGTCATGGAAGAATCAGAAGCAGGATCATCTGCCAATGATGACACAACGGATGATGATGATGAGGAGG ATGAAGAGGATGATGATGACGACCTCCCACTCATGGAAGTGAAGAAGAAGGCCGAGGCAAAGATGGGCAA GAAGAAGAAAAGAAAGAACAAGGGTGCTAACAAAGAGAACCAAGTAGCTCAGTCCAAACTGAGCAAAGAA GAACGAGCTGAACTGAAAGAAAAGATGAGAGCAGAGAAGCTAGCTGAGAGGCTGGAGATGAGACAGAAGC AGGCAGAGGAAAGGGCACTGGAGAGGGCTAAGAAATGGGAGGAGCTTGCCAAACTCAAAGAAGAACAGAA AGTACAGCGAGAAACAGAAAGGCTAGCCAGGAGAGAACAAATGAGAAAGGATATTGAGGAAAGCAAGGAA AGGAGAAGAAAGGAAAAAGAAGAGGAAAGAGAACGTCAGAGAGCCTATTACATTCATATGAAGGAATATA TGAAACCAAGAGAAGACTTAGAATGTGAAGACCAGAAGGATCTACCTGAGCCAGTTCCTTTATCAGGAAA GATCCCTCAGGAGTTTTTTGGAGACTGTGTTTTGCTCTTGGAATTCCTACATGCATATGAGGAAGAGCTT GGACTTCAAGAAGACTTCCCTGAAGGTGTCACTTTAGAGCTGTTAGCAGATGCAATAACAACCAACAAAG TGGATGGAGCTATGTTTGAAATCACAAGGTTCTTATTGAAAGCTCTCTTCAGAGTTCAAGAAGAAGATGA GGAGGAATGGAAGACAGACTTGGAGGAACAAGGAATACAAGTACCCAAATTGAATATCTGTGAAGCAAGG TTAGAAGAAGACCCAGATCCAACGTATGGAGCTATGAGTAAAGCAGCTACAGCAGCTCTTGCTTGGCCAG TGCTTCATCAAGGTACTGAGCTGAGGAAGCTATCGATCGATCCTCCGACCCTGACAGAGATTGTACGGCT TCACTTCTTGTCTTCTGGATCCACCACAGGATCTGAGGATTCTAAATGGCGTTACCAGCAGAGAGGTGGT TATACGTGCCGTGATGATCCTGGGTTAGAGTTCCGTATGCAGGAATCAGCAATCCTCAAAACCCTCACCA AGGGAAACCTCTATGACCTCAGTTCAGAAGGTAAACTGAAGGTTCTAACTGCTCTGACCAATCAGCTACT GACGTATGTGACTATGCGTGAAGTCATTGAGGATAGCTATGATACTTGGAATACGACTCGCAGGGAACTA CGAGATCTTCTACGTCTCGAACAACGTCGAGAAAAGGAGGAGGTTACTGCAAAGTGGAGGTTGAGAATGG AGGAGAGGGTTAATGAGAAATTCCAAGTTGAGAAGGATAGGCTTGCTAAGATATCACAGGAAGGTGTTAT AGAGAATGGGGTGACTCCTGGTGTGAGTAGCTCTAATGTAAGCACTCCAGAACAACCAGGAAGTAGACCT CAGTCTAGAGCTAAAGGGGAATCCCCCAATGACTCTATGGAGACATCAGACATCCCTACACCAGGGATGT CTCTTGCTGACATCGAGAAGAAGAGGAAAGAGATGGCAGAGGAAAGTGCTGAAAAGAAAGCTGAGTCTAT ACAGCAGGAAGCACAGCTGACAAGGGAGATCAATGAAGCCATTATGAAGTACAATGTAACCCCGATCGGA GAAGACAGATTCTTCCGCAGATACTGGAAGTTCAATTCATTACCAGGATTATTTGTGGAGTGTGATCGGA ATGTTGATGAAGATGTGCTTAAGAAGATGGAAGAAGACATGTATGCCGTGCAAAGAACTAAAGTTGAAAA TATGGATGCTCCTGAAGAAATTCAGCCAACGAACGAGCACAATACCTCAAATAGCAGTAACAAGGAAAAC GTGGACAGTAATGTAATAGGGAATGGAGCGGTTACAAATGGAGATGTGCCTTCAGAATCTCCTAAAGACC TCACAGATGGTGAGAAGGAGACCCCTATGGAGGTCAATGATGTAGAAATGCCTGTACTTCGTGTTGAGGT TTCTTCTACAGGGCCAACACCAGCTGCTTCACAGTGTCAATGGGCTTTCTATAATGAACCTAGTCAGATT GACAAGCTCTTAGAAGCTCTGAACACACGTGGTCTCAGGGAAGCATCTCTCAGAGATAGCCTTCAACAGG ACAAGGCTGCTATAATGGGCCGTATGAGTGAAGTACCCACAGACTTCCTAACTAAACCTCCAACAGACGA AGCAGATATGGATTACCAACCTGGAGTCAAGAAACAAGTGGAGGTTAAGATGACTAGTGGCAAGAAGGGC CTCTTGTCTAACAGTGCTGATGGGGATGAGAAGCTGGAACTTATGCTCAGGGAACAGATTCTGGACATCG AAGACCGTCTGTGGCAGGGAGCTTTAGGCTTTGTCAAGGTGAATGACCGAGCATCTTGGGTAGAAGCCAT CGAGCAGGGATCTTATGATCGGCAGTGTAAGGAGATCTCCTGGGGGCCTGTCTGGGCACGTTCTATGTCA GATGATGGTGACTTTCTTAACCTGTCATTGTCTGATCTACCACTACCTGAGGAGAAACCCAAGACAAAGG ACAGATTGACCTCTCTCAAGAAGGGGGATGCCGGTCCTACAGGTTCCCCAGCCTCTACCCGATGTAACAC ACCAGACCTAGCTGATAATGTGGTGAGAGATCTAGCTTGTTCTCTACTGCAGGTATCCCAAGGTACAGAC ATCAAATACCTCAAGGCACCACTGGGAAACCCAGAAGAAAACAAACCAATGACAAGAACAAGGAAGAAGC AAGAGGAAGAGAAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAGAAGAAACCGAAGAAGACTTGTCGTGA GTGTTGGGAGGAATCATTGATGGCTTGTACCAGCCTGTCTCAGATCTTCCTTCATCTCTCAACCCTTGAA CGATCAGTCACATGGAATAAATCTATCTTGAAGGCTCGTTGCAGGATGTGCCGTCGTGGTGGCAACCCTG AAGCTATGTTGCTGTGTGATAGCTGCAACAGAGGCCACCACATGTTCTGCCTCAAACCCCCTCTCAAGAA AGTTCCAAAGGGGGAGTGGTTCTGCAAAGACTGCGCCCCTAAACAAATCAAGAGGAGCCCTCATAAACAG AGAGCTAAGAAGAAACCAGTCGTAGTGGAATCATCTAGTGAGGAGGAGGAAGAAGAAAGTGAAGATGACT CAGAGGAGGAAGAAGAAACCCAAGAAGAGGAGGAAGTGGAAAGTGAAGAAGAGGAGATGGAAGTTGATGT TTCTGAAGAAGAAGAGGAGGAGGATGAGGAAGAAGATGAAGAGGAGGAGGAAGATGAAGAGGAGGATGAA GAAGATAATGAGAGTGCTGACTCTGAGGAGGAAATGGGAAGCAATGATGGTGAGATAGAACATGAGGATG TTTGCTCTCGATGTCGTCATGGTGGTGAGCTGATATGTTGTGATACCTGTCCCAAGGCTTTCCATATGGA GTGCTGTAAGCCAGTCCTACGCAAGGTGCCTAAAGGACATTGGGAGTGTGAGAACTGCAAGAAGGGAACC AAGTCTGCTGCTATCAGAGTACCAACAGGTAACAAAGGCCCAGCTAAGAAGTTTAGCAGCAAACCTGCCA AGAAGGAAAGTCCTAAGACCCAGCCCAAGGCTCAGGCTCAGGCTCAGGAGAAGACTGGCTCAAGGAGCAG ATCTCAGAGTAGAGGAAGACAGTCAAGACAAAACACACCAGAACCTAACCAATCAAACAAGACTTCAAAG AAAGATGCTCAACCTATCTCAGGCTCTAGTGGCAAGAAGAGCCAACTAAGCTCTCAAGATAAGAAGGGAC AACAATCTTCATCGTCTCAGGAGAGCAGAGGCCGGTCAAAGGTACAGGAGAAGGGAGGTCGAGGGTCATC TCTAGACAGGAGGGGTCAGAAGAGGGGCATGAGTATGGAATCTACAGACTCTGAGTCATCACAGGAAGAA GTTCAGAAGAAAAAGAATTCTGGGAGAAGTCTCTTCAAAGTAGCTCTCAATGGAAGTCTGAATGCAGATG ATTCCGCTTCCGATTCTTCAGGACCATCAGCCAAGAACCGCAGGACATCCAGTGGGCGTGGTAGGGGTGA TTTGACTCAGCTTAATAAATGTGAAGCATTACTGAAGGAACTCATCAAACATCCAGATGTTCGTCCATTC CTCAATGCTGTCAGCAAGAAAGCGGCCCCTGACTACTACCGCATCATCAAGCGTCCCATGGACTTTGCAT CCATGCAGACCAAAGTCAATGACTACCAGTACTCTAGCGCAGCAGAGCTTATCGCTGACGCCAGACTCAT CTTCACCAACTGTCAGCAGTACAACCGGCGTTCTAGCTCTGAATACAAGGCTGGTCTTAAGATGTCTACC TTCCTTGAGAAGCGTATTAAGGAGTCAGACATTGAGGTTAGTCTTGAAGACGGTCCTACCGACCAGGATA CACCCACATCAAGGAAGAGCTCACGACAACGATAAATCTTCAATATCTCAGGATGCCGTGTGTTTTCTCT TTGTTGATGTTAATAAGATTGTGAGTTTGTTGTGTTGGGTTATTTATGATTGCCTTTTCAGTTGGTTTTG CAAGAGCAGATTCTATTTTCTTCTGCATGTTCCTGGTCTAGAGTGATGAGCTATAAAGGTATATGCGGTC GTCTTTTCCAGAAAAGACCTATGGCTTACCTGTGTTAAGGTCATGAAGTAAAGTTTGATTTTTGACATCA TTTCAACAAGTTAATGTGACTTTTGTAAAGTTATTCATTTGTTTTGCCCCACTTTTACCAGAATCACTAT AAGTGATTGTGGGATTTTCTTGGAGAGAAATCAGTCATTATAATTTTCTTATATTCAAGAGTGTAGTATG CTGTACCGTAGTCATTATTATAGTTTTCTTAGTTTTATCAGTTTTATATGGTGGTATGAATTTTCTACTA AATATTGAGAAAAAAAATTAACAAAAAACATGTAGTATAAGAAAATGAAATTTGCTGTAAATATAGTGTT GATGAGGTTACTAGCATGCTTACAGACAAAGGTGTTGCAGCATTTGAAAGTGAATGTATTTATTGGATAT TTGCTTTGAGAAGCCCTGTTCTGTGGAAAGTAATATAAATTAACCAAGATTGGTTATGTTACACATTTCT TTAAAAACTAATTTGTCCTGAGACCTTGAGTAATTTAAGTCATTTTAATATTTAATACAATTTAAGTTCA ATTGGAAAGGCCTTTACATAGGATGAAATTTGTTTCTACATGCTTGCATGCTTATGATATTGACATGTCG TAATAAGTTGTAATCTCTGTGTACTTTACGTGTTAAGAAGTTATCATTCTGATAATAGCATGTTGATGAA ACAAGGCTTGGTATCAATACACTTTGATAGAAGCAACATTGAAGATAGCTATATTGTCATTTTACCTCTT CTACATTAGATTGAGGGATGTATTCTTCATAGTAGTTCATGTGTACAATGGAAGGCTAATCTTATTTCAT GATTATATAGAAAGAGGTTATCCCAGATCAACTTTAAAACAAAATTAAAAAAATAAAAACGAAAATAAAG CATTAAAGAAAAGAAAATGTCTTCCTTTTTGTATACAAGAGGCACTGTAGGAACAACCTTTTTTTTTCTT TCTCTCTTTCTCCGTTATTTTGTTAATATTATAAATAGTTGAGTATAAAGTGCCCTCTATTGTTAATGCT TCTCAATATGGTGTGGTATCGCAGCACAAGAATGGTTGTAGATGTAGTTAGTGTAGTTTAGAGCTTTGCC TGTACTAGGTGTATTTTCTTTCTTTTAATTTCACCTCTATTTCATTTTGATGGTGACAAAAAAACAAACA TTGGATACAAATACTCATAATGTTGAATATTGCTCTCCATTGTTTTCAAGTTTGGGGAAGATTTGAAAAT TATTTAATATTTTCATAGACTGTAAAAAGATCTGTAAATAGTCAATTTTTTGTACTCCAGTACCAGTTGA GCTTCTCATCCCTCTTTATCTAAAGGTCCTTGCACTCCTGTTGTAAACACTATTTACCAAGATTTTTATT CCAGAAAATCTGTTGTATATGATTCAATTTTCAAGATTGGTAAGATAGTAATATGATTGCATTTCATGTA AATGTCCCTATGTGTTGCCGTCACTATAGATGTACCTTACATTTAATGGGAATAAGTCAGGTTCTTAAGG GGTATACCTCTGTTTCTATTAACTCCACAGACTGCTTGTATTTCCCATTACATTTTGAATGATTCAAAGT AAAATTGCAATTGTAAGCATTTATATGCATCTACATTTTGCAGATAATATAGAAGATCAAACAGATACAT GCAGTGTAGATAATTCTACCACGGTAAATACATGTAACTTATCCAGCCACAATAGTAGAAATGCTTAAAT AAAAATTGGTTGTCATTTTGGTTTGTTTTTGTTGCTGGAAATTGATAGGGCCTATGCGTAATGAAAACAA AAAAAAGGCAACGACTTGAAGAAAAAAAAAAAATCACATTATGACAGGTCTAGTTCAATAGGTAGGAAGT GAATATACATGTATAGTTACTTTCTTTCATATCAATGAAAACTTTATTTTGCAAAACAATGTAACATTAT AGATCTTGCATTTGTCCCTCTAAAATGTTCACTGAACTAAGATGAGCGGTTATTGCCGAACATGTACACC ATGCACGGACAGACACACACACACCACCATACAACCCTATTAACCCAACACAATCAAATATATGTTGTTA TCAAAACTCTGAAAATTATTCACTGTACATCTATTTTCTGAAATCCAGATGGTTTTTTAGGGTTACCAAA CATAGCACATGCATTCAATGGAAAGTCATTTGGCATGTTTTCTTCTTTTTTTTGGGGGGGGGGGGGGGGG GGGGCTTTGTTTGTTTGTTTTTATTTTTGGTTTCCAGAACTCGACCTGCCCTGTGTGGATTAATTCAAAT TCCCATTTGCTGTTTAGAATGTTGTGTGGGTCTAGGGCTATTTAAAACGTTGTGTGGGTCAGGGGCTATT TAACAGTCACATGTTGTTAGACATGACGAGAGGTTATTGAGATTGATCAGCAGAATCGCTGGACAATAAA GAATGGTTGAGGACCAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
