Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041612860.1 PREDICTED: Lytechinus variegatus 3'(2'),5'-bisphosphate nucleotidase 1-like (LOC121418763), transcript variant X1, mRNA AGTGCCATAGCTCTGGATGGATAGGTACACAATAAATTGCCGTAAGTACCAGCAAGCTTTGTGATAGTGT TCGTACACAGTCACTCAGACAGAGGAGTGTACATACCCGACCAGCACGAACCATCATTCTTCAAGGCGTG TTTGGGACAAGCAGTTTGGAAACGCTCATCCTTGTAGTGTGATCTTGGCTTCCTTTTGATAGTGTAGGTG TTGAAGGTAAAGATGTCCTCGACGGCAGCAGCATCAGGTGTGCCTCTGCTCATGCAGGTGATGTCAGCAT CCCATGCTATAGCCAGTAGGGCGGGGATGATCATTCGAGATATCATGAAGGCTGGAAACCTTGGAGTTGT ACTCAAGAACCAGCGAGAAGATGACCCACAGACAGAAGCAGATCGAAAGGCTCAGCGGTGTATTGTATCA TCCCTTCAGACCCGTTTCCCTGGGATCACTGTCATTGGTGAAGAGGATCTTACTGAGAGTGCAACAGACT TGATAGAGATGGGAGATTCAGAAGATGTACTCAGTAAAGCTTGTCCTGATAGTCTCAAGTCAGTCTCACT GGCAGATATTGTGGTATGGGTAGACCCTGTAGATGGAACCAAAGAATACACACAAGGATTCCTTGACCAT GTGACAGTACTGATCGGTGTGGCCGTGAATGGAGAGTCAGTAGGGGGCGTCATTCACCAGCCATACTACA ACTACCAGGTGCCTGATGCCAAGATGGGGCGCACCATGTGGGGCGTGGTTGGACTAGGATGCTTTGGCTT CACCCATAAAGAGTTACCAGAATCCCAGAGGGTGATCACCACGACAAGATCTCATGGCACACAAGCCGTG CAGGATACCATCGATGCTATGTGTCCTACACAGATCTTGAGAGTTGGTGGTGCAGGCCACAAGGTGTTGC TCTGTCTTGAAGGTACAGCCAGTGCGTATATCTTTGCTAGTCCTGGATGTAAGAAGTGGGACACCTGTGC ACCAGAGGCTCTCCTTAAAGCTGCAGGAGGTACATTGACCGATGTCCATGGCAACAAATACCGCTACGAA AAAGACATCAAGAGGATGAACACTGGGGGCGTCATCGCAGCATATCGATCTCACGACTTTTACCTCTCCA AAGTACCGCAGTCAATAAAAGACGCTCTGCCAGCATGACGAACGCTAACTGCTTTGAGAAGGGAGTGAGA GCGAGAGAGAAGGGCCAATGAAAACAACCAAATTACAGTTGAAATCAAGCTTTATTGACAGAGATAGTAG ATGTTCTTGGATAAGTATATAATGGATTTGGATAGAGGGCAAATGTGTGAGGTATCGGGAATTTCAAGGA CAGTGTTGGTGAAGAATTTGAATGTGAGAGCACATGAGCTTTTAAGTGGTCTTTTGCTCAGATTACTCCG CTTTTAACTCTTTCTAGCTTAAAATGTAGATCCAACATTAAGAGAAGACCATAACACAGCACTTGAAATT TCTTTCATGAAAAGGGCATGAGGAAAACAAAATAGATTTTAAAAATCACATTTTGTGTAAAATCGTTATT TTGATAGAAGTATATTATGACTTTGCAGTGCAAAACACCAAAACTAGAAATTCCCATTGCAGCTTGTTTT TCAAATTGATTATGAAATATACATGCTATTGCCAATGTAAGTTACTTGAAAAATTTAGAGATTTATAGCA TTGAAAAATGAGGAGATAGCTGTATAATTGAAAGTGTGTGTATGAGAGAGAGTAAAGCGGGATAAAGTAA GGGTCTAGATCAATATGGTTGAGATGGTAATGGTATGCTTATGTAATCTATACATTTTGTGGCTGTAAAT GAAGAGAAGTGAAGTAATATTGTCTCCACTCATTTCTAAAGCTGTTTAATATTTGATGGGGGAAAATTGA AATATAGATGTTGAAGGGAAACTCAAGTATGGAATGTCTAACTAGTACTGTAATCAAGCATATAAAAATT AATTTTTTTACTGTATGTACTTTCAAGAAAAAATGTATTTTAAGATTATATGATGTATAAATGATTAACG GCATTGACATATAAAAATGCTAATGAGCTATTTTTGTAGATGTGGTCATGTTACCATGGCAACCGCAACT TTAATTGTGAATGTCATGTGAAAAAAATTGAATATTTCATTGCAGTATTATTTGAGTAGCTTTCAAATTG AGCCTCCAACCGGAGATTCGTCATATATCGCTTTAAGATTTAAAAAAACAGTGCTTTTTAGCGCTAAAAC ATCAAGTTAGAGTAGTGTACTTTTGTAAACAATTTTTATGCAATTTAGAACAATGCTTTAATGTCTTGAT TTGACTGATGTATTAACATCGTTTTGTCGGAAACAAGAAACAAAATTAATGTTTGTGCAATGCTAGCATA CATGTGTACTGCATTTGTCATTTTGAGCTTATGGGTGCCATACAAAAGTTATTATGGTGCCTAGTTATAA CATGAAAACAAGGAGGGGAGATGCACTTAAAGTTTGCTGTGCATTGCATTTCTGTGATGCAATGCTTTGA AATTAAAGAATGATTAAATCACCTTGCACTATATTCATGAAAGAAAATATACAAATAATCGGTATGTTGT GTGATGTTTTAAAAACACTTGAGTGTTGTGGTTGAATGTAAGTCATAGTTTTTTATTTGAACAAATTTGA TTGTCAGATCAATATGTGTGTTACAAATAAGAGGTCAACACCTCATCTTTTCTTATATATACATGTTCTG TTGTTCCACCAAAACATTTTTGGGAGGGAGGAAACATGTAATATTAAAGCAGTATAACCACCGAGTAATA CATTTGCTGTTCAAATCTGTTTTAGCCTGTCTTTACTCTAAAAAGTATTACAGGACCAAAGAAAGTCTAG TCTTTAAGAAAGACAAAGCAATGTAAGGAACAATCTTCACTAATTACAAAAGGGCTTGTCGATATTGTAG AATTATTAAGATGTTGTCATTGAAACTTGAATAGTGATCAAGTTGTTTGGAAAATGTTTAACATTTGATA GAACAAAGGTATATTTGAAAGTAAAATTACTGAAAATTGAACTACACTTTAAATATTCCTCCTTTCATGT AATCACGATCTTGTTACATTGTCTCTTGCATGCAACCACATCACAATTTACATCCAAATCAAGGGGCATT GGAATAGGTCAGTTTTTTTTAGATTCTGAAATATGATACAAACAATAATTGCAAGGCCAGTCTATCGTAG TTGTAATGCATTTGTCATTAATTCATGAAAAATTCATTTGTTTAATGAATTCTGTGAAAAGGTAAGAAAT GAAAGTTGTGCACTTTGATCACTTCTAGAGTGTGTGAGTATAGTATATGTGACTTTGATTGTATGCCACA TGGGTTGACATTTATATCAACTATTTAGGATTTTTTCGTCATTCTGCTCATTGTTTTTTTACAAAATAAT CAAGAGGGAGACTTCTATTTTGCAAGGTCCAAATTTTCTTCTTAAGTGACAAGCACAGTGATTCATACTG CCCAATCGTAATGAGGAATTCTTCATATAAGTAGATATGTTGCTAAGCAAAAAATCATTTCATATGATCC AAATATGATCGTATGAGTAGTGAAATCGGGGTATGCACCCATTTGCATTCTTGTTTGTTTCATGTCAATG ATTGTGGATTATTTTGTTGAGGGAACAGATAATCATATAACACTTATTGAAATTTGTTGAACAGTGATTA CCAAAGGAAATAAGGACTGATGTTGATCGCCCAAGAGAGGAATAATCATGTAATTTGTTTTTGTCTGAAA CAAAGTCTTAAACTTTGAAGCATTGTGGATGCCTTGCCTGTAATTGAAGATTTATTTGGTATGGGACATG TCAGAATTTTGAAAGGAGTATGATTACAGAAAACATGAAATTGGCAACGTGAGAAGACCGAGGAGTAGGA CTTGAGTGATGAAATTCACTGTTGTTATTAAACCAAGGGTTCGTTTTTCACAAACATTCCAACAACTTCT TCCAATATAAACATGCACACTCATGGAATCCACTCAAGAACCGTAATGTGTATTAATTGTTCCATTGGTA GCAGAGTTCTTTGTGTGGTCCATTGTTCAACTACATCTGTGATCTGTGTGGTTTCTAGTGAATGATTCCT TGCTTGATTCAATGCAAACGAGGTCGTCTATAGAGCCACGCCTATTGTTATTATCATGCTGCAGGGGTGG ATCACAATGTTAACATTGAAGCCAAATAAAAATATCAAATCTATGTTTTTTGTGTCCGAATGCGATGTCA TAAAAAGGCCTTCATCAGTATGATTAATAAGAAAAAATTATGCTTGCCATCCTAATAATCTTATCTTCAA TCAAATTGTATTGTAATTTTTAAGAGTTGAAAACTCTTTTATTGTTCAATTTTCCAGGATTTATATTAAC CAGTCTTTGATTTCAGGCATCGTTGGTATAACAGATAATTACAGTATGTATGGGAAAACAAAAAGTGAAG GGGGAAAAATAGTTTGCAGAGCTAATGTTCAATCCACTCATCCCCGTTACATTGACTAGTTTATTATACG GCTTATTGATTTCTTCCACTCTCACCATTGCTTTACTTCTGATGGTTATATCTAATTGTTTTATTTTAGA TTCTTTTGGTTCTACGGAATTCAAGTCTACTCCTTGCTCCGCCTCGTGACGGAACACACAACATACAGTA CCTATTGAAATTCCTTGTGATCACTTACAACTTTATTGGCATAGTAATGTACTCGCTGTGTAAGTGATTG CAAAGACTTTCAGGAGCATCCTTTTTTTTGTCATTTCTGAGTGAAACACAGTTGTAAAAATAACATTGAC TATTGATGTATAGTAATTTGCAAAGTTTTAATATTTGTTTTACAATTTGTAATTTGAATTATACCACTGA AACAAAGAATATTTTGATGTTTACAAAAGAAAGACATGTATATTACTAGCTGTGCATACAGAGAATACTA ATAAAGTAAAGTATATCATACATAATTAATGAGGTATGTATCTTTTTTTAACTTATGTTGTACTGACAAC ACCGAACACTAAATGAAACAAAATCATTTACTCTACAAAAGTAGGAAAACACATTATGCAAATTTCAAAG TTTAATTCAATTTCAGTTTTAGTAAATTGGAAAAGAGGGTTTCGTCAAAGCCGTCAATGCTATCACTACA AACTCTGATTAACAGGGATGGCAAGGAAAAAAAAGCCACAAGGCAGTATGGAATAATTTTGAACTTCTAT CATGGTTCTAACTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds