Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030982542.1 PREDICTED: Strongylocentrotus purpuratus multidrug resistance-associated protein 5 (LOC591705), mRNA TACATCACGGGACGATGCATCGATAATATAAGCTGCTTTGTAAGGTGAATAGAATAGGTGAAATGAATAC TTTTCTGAGTATTTTGACCAAGAAGAGGGAGAATAGATTTATTCACTGAGGCTTAACTTGTTAACCCGTC TTAACTACATACATGCAGGCTATTACACTTTCTTTAAGAGATAGCTGTGTACATCGAGGAAAAAACAGAA AAAAGTTCAATAATGCCTGACACGCATTTAGAAGAGAGTGATGTATCAGGTGATGCCATGATGCCAGAAA CAGAAGATGCAATGACGTCAGATGGTGGGGTCGAAATGACAGCGGTTACCTTGACCCCAATGGACGAGAC GATTACGACGACGACGACGACGACGACGACGAACCAGGTTGAGGCGACCAAGCAGGATGAGAACGTCGAT CATAAAGAAAGTATTCAAATGGATGATAGTGGGAGAGATGGATTTAAATACAGGAAAAGCGTCCAGCTAC TTATACCCATTAGACTCAAGCCTACAAATGAACAATATTCACCGTTGGATCATTGTGGACTTCTTTCATT CGTATGGCTGTCATGGATGACGTCCTTGTTCTTCAAGGCTTATAAAAAGACGCTTGAGTATGCCGATCTT GGAACGATGTCGGAGTATGACAGAGGCGATTATAACGGAGATAGACTGGAGAGACTGTGGATGGAAGAAG TGGCTCTGAGTGGTAGTGAGGAGGAAGCTTCTATCGGGAGAGTAGCCATTCGATTTGTAAGGACCAGGCA GATCGTATCAGCTGCTGTGCTTGTCGTCGCGCTGATGGCGTCTTTCGTCACATCTGCTGTCCTTGTACAG AGGTTACTGGAGTATACTGAGGAGGAGGAGGTCGACCTCTGGTCCGGCATCGTACTCGTTGTCTCTATCT TCATCCTCCAAATCGTTCGTATAACGGGCGACGTCTTCTCTCGCTCATTCAACTGTCGAACAGCCACACG TCTACGGAGCGGTATGCTGACTGTGGCGTTTCGCAAGCTAGCTAACCTTAGGAGTCTACAGCAGCACAGC GTCGGGGAGATTGTGAACATATGTGCCAACGACAGTCAACGTCTCTTCAACGTATGCGTGGTAGGAAACT TCCTGATCTCCTCCCCAGCCTTGCTTCTAGCAACCCTCATTACGACACAGTTCATAGTCGGAAGTGGGGC GTTGATCGGGACACTCGCAACATTCATCTTGTTCGTCCCTATGCAGGTCATGGCTGGAAAGACCATATCG AAGATAAGAATACAATGTATCGAGATCATCGATGTCCGTGTCCAGAAGATGCATGAGCTTGTGACTTACA TAAAACTGATCAAGATGTATGCCTGGGAGCTACCATTCGCCAAGTCAATAAAAGCTTTACGCCGCCAAGA AAAGTCGCATTTGGAAAAGGCGGGAATGTTGCAGAGTTTCAGTCTATCCAATGTTCCCATCATTCCAAGT CTTGCTTCAGTCCTATCCATCATCATCCACATCTATATGGGAAACTCACTCACTGCAGCTGAGGCGTTCA CTCTCGTGTCACTTCTGAACGTTTGTAGAGCTGTTATTGGACCTGCTCCCTTTGCCGTCCGCATGCTGGC TGAATCTAACGTTGCACTGGATCGACTGAAGTCAATCATGATCATGGACAAAGCGAAAGCGAATGAGAAG CTTGAAGATAGTAGTGAGAACATGGTTGAAATCAGAGGAGGAGAGTTCGGATGGGATGACATCTCATACA ACGAAGATGCGATCCAAGATGACATCACCATGGAAACTACGTCCGAAGATACGAACAAAAATGAAGTTAT CGACACGAATGGTAGCGGTGACCCAGAAGTGATGATAAAGAACGGATCACACAATGCTACCGATTCAAAT GGAATTAAAGAACAGACATCTGACGTAAAACAACACGAGTGTAATAGTGTGACCGATGAATTCTCGAATA ATATTGTATCAGTACTTTTCGATGTCAACTTTGACCTCCCAAATGGACATTTGGTTGGTGTATGCGGATC TGTCGGCAGCGGGAAGTCTTCGCTGGTCAATGCCATCTTAGGTCAGATGGAGAAGGTCAAAGGCACTTGC AAGGTCAGGGGAAAGTTCGCTTACGTTGCGCAGGAAGCCTGGATATTCAACGCCACAGTGCGAGAGAACA TTCTCTTTGGAAAACCGATGGACGAGAAGCGTTATGCTATGGTCCTAGAGGCCTGTAGCCTCAAACAAGA TCTGACGATCTTAACCAATGGAGATGAAACAGAGATCGCTGAGCGAGGAATCAATTTGAGTGGTGGTCAG AAGCAAAGGGTCAGTCTTGCGCGTGCTGTGTATGCTGATCATGATGTGTATTTCCTAGATGATCCGTTGA GTGCAGTAGACGCACACGTTGGAGAACACATCTTCACGAGGTGCATCAATGGAATCTTAAACGAGAAAAC CATTCTTTTCGTCACACACCAGCTTCAGTACTTACAAGACTGTGACTCTGTAGCAGTGATGATGAATGGC CGGATCAAGGAACAAGGAAGTCACAGTGAACTCATGTCAGAGAAAGGAGAATATGCTCGACTTATCACCA CACACTGCACGCAAACTCGAAGATATACAAGAAGGTGTCAGCTAATGACATCAGAAATACGGTGTAGTGG ACCACCGACCTGGGAGGACTACCGGGGTTACATACAAGCAATGGGAGGCTACATCGCTGCCTCCTCAATC ATCTTCACCTACATCGTGGTGATTGGGATGCTAACATTTAACAACTGGTGGCTGGCTTACTGGATAGGAG AGAGTAGCAACCGACCGTACAACGAGACATTGGATGAGGAAGCGCCATCGCTAGTAAACGACCCTAATCT CTGGTTTTACATGCTGGTGTATGGAGGTTCCCTACTTCTCATCTTCATTGTGGCTGCCATTAAGAGTGTC ATCTATATGAAGCTTGATGGATATGGAGGTGTACACGAATACCATGACTGCGAGCGGCAAGACAAACTGC AGGAACGCGCCGCCGACAGCGAAACCATTCCGTCCCTCAATCTAACGTTAATGACGCAGAAGTATTATTG CGCCATCGTCTTCGCCCTTCATTACCACAGTCGGGCCAAGTCAGCAAGGTTCATCTGGCTTGTCGCTCTA CCCTGGTTGTCTGGATTCGCCTATCATCAATATCTCGCATGGTTTATCAGGCTTACACTGAAAGCATCGT CCACCTTACACAATAATCTATTCCGAGCAGTTATACGTAGTCCAGTGAGCTTCTTTGATACCACACCTAT TGGACGAGTGCTCAACAGATTCTCTAAAGATATAGATGAGCTGGATGTGATGCTGCCAATCAACATGGAA ATGAGTCTTAATTATGTCCTGACGATCGTTGCATCGTTGATCACCATCTGCATAGTATTCCCGTATTCCC TATGCGCCGTCATCCCAGTCATCGTCGTCTTCTTCTTCATCATGTTCTTCTATCGTAAGGGCGTCAACGA CCTTAAGCAGTTGGAAAACATGAGCCGATCTCCATGGTTTTCTCACATTGGTTCGACTGCAATGGGACTG GCCACCATCCATGCCTATGACAAGACCGATGATGTTATCACAAATTCGACCATGCAGCTCATCTATACTT GTTCCAAACAAGACATTAAACCAGAGGCTCCTGAAAGCATCAAGTCGAGAATGCCTGAGAAAGGCTGGCC AAGTCGAGGGGAGATCCGACTACATGATGTCGGGATGAGATACAGAGAAAACCTTCCGCTGGTTCTCAAG AATGTAACGTGCACTATCAAGGCAGGAGAGAGGATTGGCATCGTGGGGAGGACCGGATCAGGGAAGTCTT CTTTGAGCGTTGCCTTGTTTCGTCTAGTGGAGGCTGTTAAAGGAACAATAACTATCGATGATGTCGATAT ATCGGAACTTGGTCTATTTGATCTGAGATCTAAGATGTCCATTATTCCTCAAGATCCTGTCCTATTCATC GGTACCGTAAGATATAATTTGGACCCATTCGGTGAAAATAATGATGCTGATCTGTGGCAAGCAGTAGAAA AGGCCTACCTGAAGGAGAAGATTAGTTCTCTAGATGGCGGTCTCGATGCTCTTGTTGCAGAAGGAGGAGA TAACTTCTCTGTTGGTGAGAGGCAGTTGATGTGTATGGCGAGGGCACTGCTTCGGAATAGCAAGATCCTA TTCTTAGATGAGGCGACTGCAGCCATTGACACAGAAACAGATAGCTTGATACAGCAGACAATACGAACAG CTTTCAATGACTGTACCACACTCACCATAGCACATCGACTTATTACAGTACTAGACTCAGATAAGATTCT AGTCATGGATGATGGAAAGGTTGCTGAGTTCGACTCGCCCATAGCTCTACGGGCTAACCCAAAGTCTATC TTCAGGGGGATGTTAGCCGCAGCTGAATCTCAGAGCACCTAGCTCAAGAGTCTATCCAGGACAGATGACG TCGGAGCCGGTCCTACTCCGCCAAGGCAGAAACCAGCGTATTAGTTTAACTGTTTGTACCTCCGAAATCT TGTATTTCTGCCATAGTTTTATATTTACCTCACATATTTTAACGTTCATTGAACAATTGTGCAACACGGT AGCCATTCAGGAAGACAGTATCATGGCTGAATGTGAGAACAGCTAGCTAAAGTCAATTTATTTCTAAGAT ATAAGATGGCGTAATTGGCAGTAGTTGAATCATAGAGGTATTAAAAAATGGAGTCCCAGCTCACTAAAAT GAATGCTTACAGTTGACAGAGTTGAAAGGATGCACAAATGAATCACTGAATTGCTTTGATTCTTCGATGT CGGAGGTTTCACGTCGCCGAGGTAGACAACAGCGATTGAAAAAGATGTTTATATTTTAAAGTATTATTAT GCTCAATTAGTATGATGAATCAAAAAGCACAATAAGTAAACATGCAGTTGCATTTAATACAATCATTTAT AGTAACAAAGCCTCAAAGTTTAGAACTTCTTGATATATAAAGCCTCGAAAGTGTCACCAACATACGCTTT ATGTGCAGAGTTTAAGTCCCTTTCTTATTCATTCCAAGCACTGTAATTCGTTATTTCTATCATGAAAGCT TATTTTGTCAAATAAAGCATTTACTATTAATGTCCTCACATGCCCACTCGAGATATTTCATTTAGTCTGG GATGTTAATAGGGCAATATAGGGGCAGTTTGATGCATCTTCTAAAAACCCAATATTCTGCCGATAGTGTC TCTTCGTTGTGCAATATAAGGTTATCTGAATGTTTTCATCACCTGCATGGGAAGTACATTTACATATTTT GCATGCCTGGTGTGGCGACACAGAAGCTTCCTTTTCCTTCAAAGACAAGCACCTACAGTAACTCCAGCTG TAATACCTCTTTGGTTGTATTAAACCTTTCGTGCTTACTGCCAGTACAAGTATACGAGTACATGCCATTT TTACCTCTGACATTTTCACCTCTAGAGTTTTTACCTTTGACATGTTTACCTCTGCCATTTGTTTACCCCT GGCATTTTGTTAACTCTGGCATTTTTACATCTGACATTTTTACATCTGACATTTTTACACCGTACCTTAT ACATAACACACGCACCTGATGTAAGAATTGTTTTGTTTTTCGCACTTTGAGTCAGTTCATCAATTTCTTA TTGTTTGAGGTAGCGTATGGAATTGTTAGGCTCAAACTTCAATAAACAGGGTATCCATGGCAATAAGATC TCGAGTATGTTCAGATGTGTGGAATGTAGACTTTTGTTTAATACATGTAGGACATAACTAATAGATATCC AAAATTCTAGCAAACTCAAAACTTCTGGACGATAATTTTGAAAATGCGAGCAAGCATTATGAAGTGGTGT AGCAAATACAACGCCAAGGCTGTTGTTTCCCTCCCCCGAGAACCCAACAGGCTAATTATGATGGGTTTTT TTGTTCTTGTTGTAATCAAATGTAATGTGTGTGTTTTTGTTATGTGCCTCGTTACGAACTACTATTTTTT CATTTATCTGTTACGAAAACGAAATTGTATTTCGATATTAAGCATGCTAGGATAAGCTATAATGTTTGTC CAACCTAACAACAACTAATTATAATCGGTCTAACTATGAGCCAGTTCGTAGTCGCTAACTTTGCATGGAC AGATAATGGTCATTTGTACAAAATGTTAAAACCCACTGAGTAATGAAACACACTCAGACCTAAAGTTGGA TACGTGCTCATTTAACTTAGTTGTGTGATCATATTATGCACTGACAGCACGTTATGTGGTACACAGGTGG GAGTATACTTATCATGATGGCAAACAAAAGGTATTCATGAAGTACATCCATGATTTTGGCGACGGTGGTT ATTTTAAAATGCACAATTTGGGACTTCTCCAAGTTTAAAATATCTGTGGATAATCCGGGTCAATTGAACC GTGTCTTATAACGAACTGGTATATTGAGAGACAGTATCATATCAAATATTTGTGGATAATCCGGGTCAAG TGAACCGTGTCTTATAACGAACCGGTATATTGAGAGACAGTATCATATCAAATATCTGTGGATAATCCGG GTCAATTGAACCGTGTCTTATAACGAACCGGTATATTGAGAGACAGTATCATATCACAGGTTAGTGTAAT CATTCTTTGCTAGGTAAACTTATACTTGAATTATATTGTATTTTGTATAACAAATAAAGAAGGTCTTACT ATGCAACCATTTTTGGGAGATAATGCCATCCACTAAAAAAAAAAGTACTAGTGACTGAGAGATATTATAT CGTAAATACAGTACTTTTTCTTATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
