Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT112110.1 TSA: Strongylocentrotus purpuratus WHL22.170369.0 mRNA sequence GTCGAATCTATTGGGTCTTTAAATTCTACATATTGGAATTAATGCACACAAAATTCGACCACTCAGCGTG CACCACGCGATAAATTTATGCATTTTTATGCAGGCAATGTGAGAATTCTGTGCGGCGTCGAAGTATTTGC ATGTGACTGGCGTAAATGGTAATATCAAGATGAAACTGAAATTCATACTCCTGACTATCCTCCTCTTGGG GACTCTCACATTCATCCGTTGCCAAGACGATGAAGATGAAGATGATTTTGATAGTGAGGACCTGGATGTT CAAGTAGAGGAGGAGGAAGACGTTGAACCGATTGAACAGGTGGAGTATTCACCTCCGGAACCAACAGGTC CACATAACCTTGCTGAACCGTTTGACAGTGCAGATGTTCTTGGCACAAGATGGATTCCATCCAAGGCTAA GAAGGACGGTGTCGATGAAGACATCTCAAAGTATGACGGAAAGTGGGCCATTGAAGAAGCAGAGACTTCC CCTCTTGCCGGAGACTTGGGACTTGTATTGAAGTCCAAGGCCAAACATCATGCCATATCTGCCAAGTTGA ACAAGCCTTTTGTTTTTGAAAATGAACCATTCATTGTCCAATATGAGGTTAAGTTCCAGAACTCCCATGA TTGTGGTGGTGCATACGTGAAGCTCCTGACTGATACGCCAGATCTGTCTTTGGATTCTGTATTTGACAAA ACACCATACACCATCATGTTCGGACCTGACAAATGTGGTGCAGATTCTAAGCTTCACTTCATCTTCAGAC ATAAAAATCCCAGTACCGGTGAATTTCAGGAGAAGCATGCTAAGAAGCCAACTGGTGCATTCAGCCATGT CTTCACCGACAAGAAGGCCCATCTCTTCACTTTAGTGATCAACACCGACAACACCTTCCAAGTTCTCGTG GATCAGAAGGTCGTCAACTCCGGCAGTCTGCTTTCAGATATGAGTCCCCCTGTAAACCCACCTGCTGAGG TTGAGGATCCTGATGACAAGAAGCCAGCTGACTGGGATGACAAGAAGAAGATCCCTGAGCCTGGTGCAGA GAAGCCCGAGGATTGGGATGAAGATGAACCCAAGGAGATCGTTGATGAGTCTGCTGTACAGCCCGATGGA TGGCTGGAGGATGAACCCGAGCTCATGGACGACCCCGATGCAGAGAAACCCGACGACTGGGATGATGAAA TGGATGGAGAATGGGAACCACCAAAGATCAACAACGCGCTGTGTGAAGACGTCGGATGTGGCGAATGGAA GGCTCCCATGGTGCCCAACCCAGAATACAAGGGCAAGTGGAAGGCACCTTACATTGATAACCCTAACTAC CAAGGGGAATGGAAGCCCAGAGTGATCCCTAATCCAGACTTCTTTGAGGATCTAGAACCATTCAAAATGT CTCCTATCGGAGCTGCTGCCCTGGAGCTATGGTCAATGAGTGATAAGATCTTGTTTGATAACTTCATCAT CACCACCGATCGAGAGGTAGCTGACCAGTATGCTGCTGATAGCTTTGGTCTCAAGCGCAAGGAAGGAGTC GTTGCATCAGCTGAGTCCTTCGTATCAGGTCTAATCGATGCTGCCACTGAGAGGCCGTGGCTGTGGGCTG TGTTTGCTCTCGTCGTTGTCATCCCTCTCTTCTTCTGTATAAGATTCTGCTTAAAATCGAATCCAGAGGA GTATGAAGTTAAGAAGAGGGATGGAGCAACTCCAGACGATGAGAGGGAAGGAGAAGATGAGGATGAAGAA GGAGAGAAGGCTGAAGAGGAGGATGTATCAGCGGAAGGAGATGCCGTAGTGAGACAACGAAAGAAGACCA CCAAGGCAGACCTAGAAGGTCCCACAGAACAGGCTGAGGAGGAGGCGACACCAGAAGAAGCACCAGCACC AAAAGAAAAAGCCACCACACCCAAGAAGCCTAAGACGCGCTCAAGAAAGGAATGATGACGTCCTGTTGCC TAGCAACCCGTCAGTTTGCTGAGGATAGCATCTTCTCTTCTAGCAACAGGTGTCTAGTCAGTCAGCCTTC ATGATGTCAACATAAACAAAGGCAATACACAAGTTTGTTTGTAAACTCGGTCGAGTGAGTCACATAATAA TAGTATTCTGGATTTATATAGCGCCTAATGCACCTACAATACCTCTAAGCGCTTTACAGATATTACTATT AACCCAGTCATCAGATAGACGCTTGCCTGCACACACTGTCCAAGGTCTAAACTGTCTCAGTGATGGTTTA GATGTTTTTCTTTTGCAGGCAATTCTAGTTATCTCTTTAGTGCACAAAAAATCATTAGATTTTAATGAAA AGTTTATCCAAATTAGTTACTTAACTAGTCATTTGGTGCCATTACTTTGTTTTAAAGCACAACTGCTACA TAGTTGTTGATTATTCAGTTGTGTGGTGGCATTACAAATTAGGGAAACCCCCAAAATACAGAACATCTTG TTGTAATCACCCTGACAGTAAAAAAAACGACATCAACAAAAGATGATATGTTTGACATCATGAAGGCTGG CTACTGTTGGACTTTCATTGTAGTGTAGGGCTAGAGATAGTTAGCCAGTGGATTGTTTATATTCTGTTTT GTAGTAGCAAATATTTTCTATCAACTTTTTGTTATTTCTTTAAATTTGAGTTCGATTCCATGAATACTCG ATTGTTTCTAGCGCATTTCCATCCACACGTGGTCACGTTTATTTTGCAATATGAGCTTCGAGTTCATTCT TTCTTTATTCATTTATTCATTTTTTGTTTGTTAAAAGGACTGTTGGTCTATTTATTAACAAACAATTCAA TAGTGTATAGACTCACAACGAATCACAGGACACATGAACCAATGATTAGTTTAATTCTGGACTATTTGCT CTTTGGTCATTAATTGCAACATTATTTTTTTTTAAAGTAGGTTCTTTGATCTACAGTAAATGAGAAACGT AAATCTGCTAGAGAACATTTACAGAGTTAATGAATTGAATATTGAAAATGTAAGGGAACTGTATAGAAAA TAGTTTAGTTTCATCCCCATGACATTCGTCTCTTGTGTATAAGAGTTTCAAATTCATATGATAGATAATT AGCAATCGTATTGTATTTGTACCAATTTTTGAAAATGTCAAAATTCTGTGGTGATGAATTTATTTCAAAG TTAGATAATGGATTGTTGGATGATGGATTGAATGAGAGATTTTTAAAAATATATATGTTGGGGATACACT GGCTTGTATTTGATTCCACTTGATTTTTATCTTCTTTCATTTTTTTTCGTTGATATTTCTCCTTTTGTTT GGCGTTTCTTACAACAGATATATACAGATGATACTAGTGGTTTTAGACATATACTAGAATAAACATGTAG GTAATTACAAATCTGTTTCATTATTATTGTTATAACTTTTTAAAATATTGTCAAGGATATGAATGTTTGA CTTTTAAGGTCTTATGATTTCAAGTTCTATCATTGTTGTTGTTACAGGAAATACATGCATACATCGAAAA GATGCCGATACTGCCCTATTATGTCAAGAGTTTTGGTTGTGTGACTTTTAAAGATGAAGAGAAAACAAGA TCTGCTCGACATTCATGTTTTGTATGTCAAGATGAATTGCTTGTAACCAAGGAATAACCTCCTTGTTGTA ACTAGACTATAGATATTCAACTCATGTAGCTCCCGTTGTTAGATCATTGAAACCATCCAAGTGAGGAATG GTTGTTTTTTTAGGTAGAAGTTTTGATCTTTTGAAATAGATGAAATGGTGCATGAAGTTGATACATGAAA TGGATACATGAATATGTGATACATGAATGTACTCATCAGTTGTGCTAAGGTGCTTACTTGCGGTTGCGGA TGTTGCAGTTAGTAGGATAGATGGATATATTCTTTAATATCATGTCTAAGAACATATTCATATTGGCAAG ATTATCCCCTTACCTCTATATGCCTACATATTGAAAATGAATTTGAGATTTTCGTTTAAATGCTTTGTTT TGTAAAATCACAAATGATGGGGTTAGTTTGATCAAGATTGATTTAAAGTGCTATTGATGCGGTGATTGAA GTTCTAGTGTAACATTGGCTCTCATCTTGGAAAAATATGTTTAACAATGCGTAATGATCTCTTAAGCTGT AACATTGTTGGTATTTGTAATGATTTACTTTCTTGGACACGTTTCAATTTCGGGTTGGTCTCAAATGAGG TAGCATGTTTGCTTTCGGGTGTCAGTCTCTCAAGCCAAATTTTTGTGGTTTGTTACCTAAAACTCAAAAC TGCTAAAAAAATTGGGTGTATGTTTGTTAGTTTTTAAGATGTTGACAGGAGTAGAACTTGGGTAGATTCC CTTCAAAGTTGTAGATTCCATATCGGGTTGTCCAATCGTATGAGTAATTTGTGGTGTCTTTGCATTCTTG GTTGGTGATGGTGATATTGTATTCGTTCACGTGGAGCATAAAGACTCTTTTTCTCCTTGATGCTGCATGT CGAAGAGTGTTGTTTGGAAAAGACATGGGGAAACAGAAAATGGTGATAAAGTGTTTGAGAATGGTTCAAA GTATTATGATTCGACAAAGCGCACAATATATTTTCAGAGCTATAATTGCATTGGTGTATTGTGTTTCTTT CTGGACCACTGAGCATGTTGCTCCAATACAAATCAAGAGGTCTGAGAATCATCAACCTGAACTATACATG TCTTAACAATTATAGGCGTAGGAAATAAAATGTTACTGTTGACAAGTAATTATATAATAGGTGTAATATT TGATATTTCATTGGTTCATTCATGAGAATTTCTTGTTCTGACATAATATCAGCTGTTGAGAGCCAGAAGG GCATTAATTCTGTATTAGAAGAGACGTGTTAAAGCCCTTCTACCTCCAATCACACCTGATATTATAGTTC GTTTCATCGTAAAGTGTTATTTGCATCTATGAAAACCTTTTCAAAGCCAAAATGAATGTCGATATTTATA TATATGTTGGTTGTTGGATTTCATCCCAGAAGTGGAAGGGAAAAAATAATTCCTGTTTACTATGCACTTG TTGAGCTTAAAATCAATAATTAGATTCCATGGTGGGTGAATATTGTTATCCATGAAAGAAAATGTACATG TGATTAAATATTCAATTGAGGTTGAATCTTTTCCCCTTAAGCATACTGTCCACATTGTAATATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds