Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038211706.1 PREDICTED: Patiria miniata junctophilin-1-like (LOC119737383), transcript variant X2, mRNA CTGCGACGTAATGGACCCGTCCATGTATCATTTGACAATCTTGGAAATGCCGCAGACAGATCATGATCGG ATGATGTTGGACAGCCGCAACTTGCATCCGTCGTCAATGGGCTGATCACTTGGACCAATCACAACACCCG ATGGTGTAACGGCACGACCCCCGGGCTGACCGCGGCAAAGGAGCGCGTAACGGCGCCCTCGGGGCCCACA ACAACTGGTACCCAATGAACGGCGGGCGTTTTGATTTTGACGATGGGGGTTCCTACTGCGGCGGTTGGGA AGAAGGCAAGGCCCACGGCCACGGGGTCTGCACGGGGCCGAAGGGTAAAGGGGAGTATAACGGATCCTGG CACTACGGCTTCGAGGTGACAGGAGTCTACACGTGGCCGAGCGGGAACACCTACGAGGGGCATTGGGAGC ACGGCCGACGTCATGGGTTAGGGGTGGAGAACAAAGGTCGCTGGGTGTACCGCGGGGAGTGGACGCAGGG ATACAAGGGGAAATATGGCGTGATACAGAGCCTGGCTAGTGGGGCCCGGTATGAAGGCACGTGGAGTAGC GGGCTACAAGACGGATACGGACAGGAAACGTACGCCGATGGAGGTATCTATCAGGGTCAGTGGGTCGGTG GAATGCGTCACGGCTGTGGGATCCGCAACAGTGTGCCTTATGGAATGGCGTCCATCGTACGCCCGTCACT CCGTACATCCCTTACATCCCTGCGTAGCGAACACGAGAATGGATCCATCGCGTCCGTCCCGGATAACTTC GGTCAGCGAGGAGGCTTCGTCCTGGATGTCTCGGACGATGGCACGACGGACACAGAGAGCAGAAGTGGGA CGATGAAACGTGGGGATGCCACCCGTGTGAGCAAAGCCCTTATTGGGCTCAGAACCAAACGGGGGAAACG GGACAAAAACGGGTCAGGGGGTCACAGGGAAAGCTCCGACAGTACCGGAGGTAGTGTAGCCTCCTTCCGG CCGAAGCTGAACCACCAAGACTCCTTGAAGAGCACTGAAAGCGAGAGTCGTATGAGTTCAAGCTCCTTGC AATCCTCGGTCATGGACAGTGACTTCAGTCACCCGAGTCACTTGATGGACGATGAGGCGACCGGGGACAT CACCGAAGTTTTCCTCGGAGAATGGAAACAGGATAAGCGATCCGGTGTCGGAATCAGCCAACGTTCGGAC AGCTTCCAGTACGCCGGGGAGTGGCATCAGAACAAACGCCATGGCTACGGATGTCTGACCTACCCGGATG GGCACAAAGAGGAAGGCAAGTGGAAGAACAATATACTCGTGGCCTCGGGAAAGAAGAAACTGTTTGTGAT TGGATCCAAACGGATCAGCGATCGAGTGGAACGAGCTGTGGAAGCCGCTAATCAAGCTGCCAATATCGCC AGACAGAAGGCAGATCTTGCTATATCTAGGGCATCTTATGCCAGAGAGAAAGCCGAGATGGCGGAGACGG CAGCTTCAGAATCTAGAGAGGAAGCGTCCAAAGCACGACAACGCTCCAAGGAGCTTACTGCCTCTTTGCC TCCTAGAGGTAATGTGTCACGGCTTGCTGGCTATGGGTGCAGGACTGCCAACGTTCGTTTTGCCAACTCC CTGTCGCCTGAGGGTATATATGGTGGAACTGGGGATATAAAGCTTGATCGTAAGAAGAGTTTCTTCGGGC GACATCTCGGAGGCTTTGACCGCAAGAGTCACATGCGAGGCACCATCATTGAAGTCAAACAGGACCCCAG CTTTCAGACGCCAACTCACTCCCCAGATAGTAAGAACCACCCTAGTAGACTAGCTAACGAATGGGATGGG AGGGGGTCCAATCCGTCGTATGAGTCATCGGCAGTTAGAGAGGCTCGCTCGACGGGGAACCTGTTTGAAG GGAGTCCCGCGCCAAGACGTCGAGCCCAATCCTCTGAACATCCAAACAATGACAGTCAAGCCTCCTTCCA TCCTAGGAACCATCATGGTGAGGTCGGGGTCCGGTTTAATGGGTACCAGGACAGTGAATACAGTGATGGT TACTATGAGGACCGTCACCACCGCACGTTACCCGACAGACGTTATGGCGGTGAACGAGGATCTGCCGAAC TCACTCCAGATTCTGGTATCAGTACGACGTCGGATTCAGATCGGCTACGACGAGCGGTATCGGACAGAAA ACGTACCCTTGCAAAGCGCCAGTTTTCCCGTCAAGAGGGAGTAGAGGAGGACAGTTACGATCGTCAACAC AGCTCGAGTCATGGTCGCGGTCACGGTCAGTACGATGAGTACGATAGCTTTAACGTAGATGAATTAGAAG AAGAGTTATTGTCACAAGCTGCCTACGCACGGTTCGATGAGGAGGACGAACAGGAAAAACTCAAGCAACA GAGACAGAAACAGAAGAGTAAATTTGACAAGGAAGTGACTCTGTTATCGGACATGCCGCCGGGGCATGTA CGTACATTTGACGGCAAGTTTCCTTCTCGCTGTAAAATCCGATACCTCCCAAAGTCCAACAGTCGCGACG AGGACTGGGCTGACCCTGATCTAGATGCTGAGGGCGCTCTTGCTATTCAAGCTGGAAAAGTGAGCTGGTC TGCGAGTCGAAGCCTTGTCCTTCTGGTGCTAATTCTCAACATTGGTTTCGCCGTACTCTTCACTAATTTA TTTCTCCAAATGGAGGAAGAAGAGGACAGCTGGGAAGGCTGGCCTTGACGGAAACAACCGAGCCCTCTGA TTGGATGTTGTCAATGGCGACGCCAAGATCGAGAGACGCGATTGGTTGCTGACGAACCAAGCTGGAATCT GGTGGTTATGATTGGATGAAAGCTGAATGACATCATCAGCGTCTGTTCTGTGACTGGACACCACCATCTA GTGTCTTGCATCGTCGTTCATTTTATTTTGAAAAAAAAAAAATTAAAAAAAAGGTTGCTGTGTGAGTTTA AGGAGTTGTAGAATTGTTGGCATCTTGGGATGTGGTCTCAAGATGTCGACAGTTGAGTGTGTGATAAGGG TTTGGTGTAACGTCCATACAAACACCAAAACTATCCACAAATTAAACCAAGTTGGGGTTTACCAAGTACA GTGAGTGCCTAGACATGTAGAGTGTGACCACATTGTAGTGAGGGAACTTGGAATATAATATTTATTAATC CAATGAATTATTCATGAAGGTTCTTCATTCATGAATATTCATCATTCATCAATATTCATAAAGTCGAGGT CTGAGGTGCGTCAAATTGACTAACATATAAATAACGCAGACCTGAACTTGCTCTTAAAGTCCTTCTTAAC TTCTGATCGACAGTATGCAATTATTTTGTCTTCTACAGATAATTGTGTGCACTTTGGTCGAGAAAGTTAC TGAAAATAATCTTCATCCTGTCAATGATTTTTCAACAAAAGTGCTGAAAAAAAAGTAACAAAAAACTTAG AAGCCCAAAATATGCTTGAACGATTTTACTACTCGGCTGTTATGACATCTTTTCATTGACTTCTCACTCA AAATCTTCACATATTTGCATTAAATTATCTTTGAAAAAAATATTTAGTGAACTTCACTTGGTAGTAAGGT ATGTGCCGAATGTGCTACACTTTTTGTTAGGTGCTTGTGTGGAAATGGTATGTTACATTAAATTTCTAAT TTCTTTGGCTAGGGGCGATATTTATTTATCTAGTTTTAAGCAAACTTTTGTATAAGTTAAGAGTTATTTT ACCTTTTTCTCTGAAATTGTATGTTTTTTTCCGTCCCACATTTCATTGCTAAGCTTTGCAACAGCCAATC ACAGCGCAAAATTTTGATGGTTCTTTTTTTGCCAGTATGCTATTTGTCGAAAAATCTTTATTAAATAAAG TTAAACTACCCGGTGTGAATAAAACAAATCCTGCCATTCATTTTATCACAAATTATTTATTTTATTGAAA AATCAACTCATTTTAATTTGTCTAAGTCATTTTTGGCTTTATCTGTATTCATGAGATGTATTTAAATTTG CAATTTCTAAAAGTGCAATGTATGTTCTAGAACAAATGTCAATTACATACTTGTTGTCATAGTTACTTGC CAGCCATCGTTTTGTAGTCTGGTTCCGGATGGAAGACATGGTCATTGCAGAAGTGACTTTTCAGGTAAAC GAAAAACACGAACACATTTCTTGTTTTCATCCAGGGAAACTTTTAAACCACATTTTCAGAGAAGGGAATC GAATTGAATAGTATGACCCCAGCTGAATTTGTATGTGACTGATTTAGTGATGATTGTGGGGAAATACTAC CCTTTTTGATTAAAACAACCGATTTATCAATCAAAACACAAAAGAAAATCAATCAATCAAAACACAAAAG AAAATCATGAAATGTTCTATTTCAGTTGAAGATGTTTTTCATATTTTGTTTGTATTCTTAGTCGTATTTT AAAGTGGCCAGTGCAATATGTTTTACAATGCACAAATAAGCTTTAAAAATGTTAACATTTGTGTTATATA TTAGCTAGGTCTTTGACAACCGGGGTACTTTAATAGAAAAGCCAGATTTCAACCAGTTTTGTGACCTTTG AACTGGCTTACATTGCTAACTACAGGCGTTTTTGAAATCCTGGCATTGTCTCCGGCTGTGGCTTTATCTC TGTCTGGCTTCATGATCATTTAAAAGCAAAAGAATAGAGAAATGTTCTAAACTCTGGCCTCGTATAATTG CAATTTTGGTTTCCCTGATTCAGGCAGAAAATGGACTCATTTTGTTCAGCCAGAGACGTACAAGTCAGGA GCCTCAAATCACCTTATGCTGAAGCCGCAACAAAACCGAGGTTTCGAAATCGCCTACAAGGCCGAGTAAA AAAAAAAAATGGTTTCTCATTCATTCATTCTGAAAAAAATGAAGGAGGCTGGCGCTTCACCCCCCTACTT TTTCCCCCAAGATAGCGGATGGATTCTTCAATTTTCTCGACTCTTTTACTGATATAAAGTTGTGTCTAAA GGAGCCATGACCCTTTCTGCATTGCTAAAATTTTGTTGGGAACAAATAAAAGAGACACTTATATTCACAA TATATTTGCAAATTGTATTGCAAATTTATGATTTTTTTTTTAAAGGAGGTGGTCGGGAAAAAGGAAGCGG TGGAGGAGGGGGGAAGAGAGACCGAGAAACTGTTTTATTTTTTTTACCTGGCCTTAATGTAATGAGTGTG TAGGCCTACGGGTTTATTTCGGCTTGGTGTAATGTTTTGCACGGTCAACAGAAGGGTGTGTTTTGAGCAT GATGCGAGTGCACATTTGAAGCACAAATTATTCGCTATTACACTCTCTTTAAAATTGTCATCGTTCTCTT CGCCAACATACTAACCACACAAGAATATTGTTAGCTTTAGTAACTTACCTTCACACCTGAAAAGTGTAAC AACGTTTCTATGATCCGAGATCACAGGAATCTGAAAAGAGCACCTTATACTAAATAGTTTTATATTACTA ATTATTAGAAGTCAGCTTCTTTACTAATACCGAACAAATTTCAGCGCTCTCCATTGAAAAAAATATATCC GGATGCGTTTGAAATTTCGAGATATTGCGGAATCACACAGTGTGGAACCAAAAAAAAAAGTGGAAAGAAA TTTGGATTTTTCAACGAGACTAGAATTGCATTAAAACGAATGGAAATCTTTGTTGCAAGGAAAACATGGG AAATAGCACCTAAGCCAGTTGCATGTGCATGTAAATGTCCACACCTTAAGTTTGAGTTGGTTGTCTGTCT CATACTTACATCATATTCTTTCTCGGATGTCATCCAAAGTTGCGAAATTACAAACCTGTTGGATTCACCC ATAGTAATACCCACTACTCCACCATATCTTCGTATTTTCATTTACCATTTACCTGAAAAAAAGTCGTGCT ACTGCAGTACCAAAAATCCATCCCTTCAGTGTTGTGTTTGTTCATTATTTATTCCATCTTAGCTTTAATT CAAGTCGGTATTTTTATTTGCCAACATTATTCGTCTGTTGCACACAATAATGGTGAAGGATACTTGATTT TTGTTAAGACTTGAATCAAGGCTAAATCCATCCCATTGGATGGTCATTACTAAACTTTCAGCCAATAGGA ATGTTTCATAGCGTGACGTAACGTGTTGTGCAGGCTGGTGGTGGTACGCGTGTTTTGTCTCGAGAAAAGC CATTGGAAAGTCCAGGTTCCACACCTGAAGTTATGATTGTCGATTTATTTTGTTTTGCAGTAAACAAAAA GAGGTATATTTTTAATAGAAAGCAAAGCAAGTTGAATTTTTAATGGCTTCACAGAGTTACGTTTCATCCT TGTACCAAACTGTTTTAACCTAGGGTGCAATGAAAATGTATTTCCGACTTATGGTACATAATATTTATTT GGGTGGTTTTATTTTTCAGTAATAAATGAGAAAAATGAAATTCACTCACAAAACGAATATAAAATTTAAT TGGTTGATTGGGAAATGCCATTTCTTGGTTAGCACGGTCCTTTGAACGTGGGTCATGACAGTGAGTATAT ATAATCTAATAAAATCGGCTTTTCAAACAACTTTTTCCAAAAGCATTTTAAAACACAACTCGTACAAAAA AGGTACATGAAAATATCGTATTGTTATTGTATGTGTTGTCTGTCGTTGTTTATAAATAACTGTACATAAA AGTAAGACTATTTATAGCGCATCGGTAAAGCTTTTACACTGATGTATTTATACACCTTGTATTTTATGAC GAATTATTTATTATTAAAAAGGGTACCGTACTGGCACACTTCAAACCCGCCACGATGAGTGTTAGAAAAG TAGCTTTAACTTCGCGTTGCTAAACTTTACTTCGTCGACAGGATTGGGCGATGGAGGAAAAACCCAAACT CTACATGTATGTATCAAGTTTAATTTTCAAAAAAACCTGCCCCAATTCTTAAATTGCTTTTTATTTTAAA CAACATTGAAATACTTTCTCTTATGTTACAAAGCTGCTTGGCCCTCACATTCTTTGCTTTTTTCCTCATG ACAGTTTCATCCTTGTGTCATTATAGACACCAAAACGACCCTTGGAATGTTTTTTTTGGGGGGGGGATGT TTGCAAACAGTGGTGCGTGTCCGCCATTTTAATTGGTGCGTTTCCCAAGATGCATAGCGTTATAGTCAGA TACCGTTGTTTGAAATGTAACAATGTTTAAGAGTTCAGATGCTCGCGGAACCAGACTTGAGTAGTTTCAG CCATTATATGTTATTATTATTCTTTTTGCGTGTGCTTTTTTACTGCGATGAAGAATAATTTGAAGACATC TATAAATGATTGTTCAGAGCTCATCCCAAAGTTTACTTTCGTATAAAGAAGGTAACGATTTACTGTTAAA TTCGAGCCAAAAGAGAGATTGTACATGTATTTGTACTAAATTAACATTTTTTGTTTGTACAGTTGTCTCA AATGCTATTAGTGGTGTTAATAACATTATGGCTTGAATTTAATCATTGATAACAATAATGCTGGTCATGA ATGTGCCTTTCACCAATGAACCAAAAATGTGAAAATTAAAATGGTTGCAAAAATAAGTCAATTTTATTTT CTATCATTGGGGTCGAGGTGTGCAAAGTCACTTACATTGAGGCGTAATCATTGGCTGTATGGTGAACGAT AATGAACGACACAGGGGCTCGCTGTGTTTAACAAATTATTTTTACCCCCGACCGCTATGCCAATAAGTGT TTAGGGTTTTTCCTCAACTCTTTGTGAATATATTTGTACACTTCTTTGTAACATTTTGCCACCGTTCATA GCTGTTCCATTAGCTGGTACAAATACAAGTGAGGAATTATTACAGTCGAGTCGCCTGCCCAGGGACATAC GCCACAATCTCCTTCCTTTCTACATCCACACTCACGAGCACGTCTAGTCTCCATTTCAAGCCGTTGATTG TAGTAACACAGTAGGCCTACATAATGGAACATTTTGTGTATTAAAGTACCCTTTCTATCCTGGCCTTAAT AGTTTGTATGAAAACCACATTTTCGGCGGAAAAACCCTAAATTATTAGGTCTGCCATCGAAATGAAACGG CCCTAACCCGGCCAGTAAAAACCTAAGCGGGCTGTCAATATTTCACACTGCATTTTAATGCGAGATTGTT ATAATGAAATAATAATGTTCACATTACATGGATTGTTTACTATAGAGATAACACGCTTCGCTTGTTCGAT CATTAAAACTTTTTGTGTCGGATTTCGAATGAAAGAGATTGAATCATTTTCATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds