Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT121354.1 TSA: Strongylocentrotus purpuratus WHL22.634326.1 mRNA sequence GAATTAGGAAGGACAGGAGAGGTCGACCCCATAGTCCTCGGTGCTATTAACAAACCAGACTACATATCTC CAATGGACGACTTGGCATTTGATATGTATCAAGACCCAGAAGTGGCGAATATCATCAGGAAACTAGACAA CAGAAAGAACGAAGCTGTTATACAGGAGGAGTTTGATTTAGCCAAGAGATTGAAGCAGGCTGTATCTGAC CTTCAAAAGGTTGGAGAGCGATTGGGTCGTTACGAGGTGGAGAAGCGACGAGCGATAGAGACGGAGGATT ATGACCTTGCCAAAGTCAAGAAACTTCAGATGGAGGAATATCGACTACAGATCTACAAGCAATTAGAGCT TTATGATCTACTGGACATCAGTAAGAATCTTGTGTGGCCACTTAAAGATTGGTCCATGCAAAATAAGGAT GTACATGTACATCCTGAGTCACACCAAAAGCCTCAAAAGATTGCCCCACCCAAGGAAGCCGCCCCAAGGA GAGAGGAGAGAAGGGAGGAGCCAAGGAGAGAGGAGAGGAGGGAGGAGCCACCCCCAAGGGATCCTGATAC CCCACCTCACAACCAGGAGCACAAACCCCCCGGTGTAAGCCCAAGAGACCCGTTCATCTACAATGCTGAT GATAGGCCGCTTCCTACACTCAAAAATTCCCCTCGTCATCCGCCTCCAGAGTTGCCCCCGGTGGAGGAGC CTGAGACAGCGAGGACAGAGGATGAGACCGGAGGGGTGACTCCCGGGAGAGGACAGCTTGGTGCCATGTC TGACAACAACATCAGGGAACTAGATGCTGCATCAGAGGTCTTTGGAAAGGACAAGGTGATGAAGATCTAC TCTAGGAGTTGGGCCTTGAGAGAGGAGGGTTTAGGAGACGTCAGATCTCTCGTAGAATCATTGGAGGAAG GGAAAGAAAAGGAGGAAGTTCGTGCTTTCCTACGAGCGGCCATCTTTCTGGCTACAAAGGGCCTAAAGGA CAAAGTCTTCTCAGTGTTCAACAATGCGGTCGACTTAACCCGGTTCCTCTTCACAGAGTTCATCCCAACT CATAAGAAACTTGGTAAGGGAGAGACGTCACAGGGAGTGGATAGGATCCTACCAGAACTCATGGCAAGGA TCGGTGATACGAATGCCAAGTTGAAAGTAACGGACATTGACTTCATCGTGGAGATGGCAAGCTTTCCTGA CGTGCGCCCTCTTCATACCATCCCTGCCCATTGCCAAACACCGTTCAAGAACAATGCTCAACCCAAGATG GCTGTCACCAGGGTGGAGATCATTGAAAAGCTTATCAAGGAACTAGGGGTAGACAAAAACAGTGGGATGT CGACCTCCAGTGTAATGAAGTTTGCGAACCGTGGCTTGGAGCACCCAGCTGGTATCGTGCGAGATGCATC CATTAACCTCATCTTTGAACTCTACAAACTCAAGGGGTCAGAGGTCATGTCGCACCTGCCGTCGTCTGAG CAACCCTCCATCATGAAGAACCCCCTCTATGGCAGGATATACGATGGCTTTGATAAGATCGATGGCAAAC CAACCAGAGCTGAGCTCAAGGCTCAGGCGAAGGCTGCCAAGGACCATGATAAGAAGGCCAAGAAAGCAGA GATAGATGATCTTCAGAACCAGCTAGCTGAGCTCAAAGCAGCAACAGCAAAGAATGTGGAGAAGAGCAAG GAGAAGAAGGAAAAGAGTCCTGATAAGAGTGTGGATATAAAGAATGCTGCCAAAAAGGCTCCTGCTGAAG ACAAGAACAAATTAAAAGCCCCTCAGAACAAGAAGATTCCTCCCAGAGCCCCTAGCATCGCTGATGCCTC TGAGTATGGTGAAGACATTGATCAGCAGTGTATCTTCTGCGCAGAGAAAGATCCCAAGTTTAAAGAAGAG GGACTTGATGTACACTACTGGAAGTATTGCCCCATTCTCACCAAGTGTCATAACTGTAAACAGGTGGTGG AGATCTCCACATTGACTGAGCATATCCTGACTGAATGTGACAAGAGGGCTGACTTTGCACAGTGCCCTCG TTGTTCCGAGACGCACAGTAAAGCTGACATTGATCGATATGTATCAGAGAAACTCTGCCAGCCATCGAAG CCTGGGACAGCCAGGTGTCCAACCTGTCATCTTAACATCCCAGAAGGTGAGGAAAGTTGGAAGAAACATC TGCTGGGTAAGGATGGATGCAAGGCCAGCAAGAGAAGGGAAAATTACTTAAAGAGAGGTAAAGCAACTCC CAGTTCAGTGAGAGACTCCAACAAGGGCTCGGTCAAGAGTAAACCCGGGGGTAAGAAAGACAAAGAAATC AAACCAAGAGGAGGAGGAAAAACACCAAGGGTGAAATGAAACTCATCAAGAAAGGGGTCGTTTCTTAAAG TAGTGAGGGGATATGAGATACACTCATACTCCAACCATTGACAAGGATGCCAATTCAGTTAAGGAAACTC ATCAGGAAAGGTTCTGTTGAATGGTATTGAGGGGTAAGAAATTCCTCAAACATCAACAAGGAAAGATGCC AAATCAGTTAAGGAAATTCATCAGGAAAGGTTTTGTTGCATGGTATTAAGGGGTAAAGAGTACCTCATTG CAAGAAAATGAAAGACTCATTAACAGGCATCGGCTAGCTGAACTTTGTCTGTTTTGAAATCAATGATCTT CAAATTAACTGCCAAATTAGAAGAAAATAATAAGGAGGAAATTGAGTTTCTAAAAATGAAAAATTGCATG CTTCTTTGCAATTGCAAACTGTTTGGAGCTGTCACAAGAATAAAGACCTTTTTCATATTGATGTCAAATT CAAGATAAAATTTTCATGAAAAAATCTTTTCATTGTCGCAAGAATAAAAATGGATAGACTTGTTTCATAC TGATGTCAAGCTTGAGATACAATTCGATTTTTCAATTTGCAAGGGGAAAAAAATTACTATATTTTTTATA TGACAAATGACTAATTGATTGATTGATTAAACCTTTTAAATGCATTATAGGACATGTTCTCATATATTTG TTTTTATACTGAACGACTTTTGTATTAGATGCTGCTTGTAAGTATCGGCTTGCATGGTGATGTAGATATA CAGTAGGCTTGCGGTTGCACCATGTGAGAGAGATGGAGGATTAGGGAGTCCTGAAAAGGACTCTCGGTAA TCTTTCTTGAGGGTGTGTAGTCCTGAAAAGGACCGTTGGCCACTCCCACCACCCATCCTCTCCAACCGGC GCTATAGTTCTCCTTAGAACTATAAGCTAAAAAAGATAACCAACAGTCTTTTTCAAGACTACACCAACAG TCCTTTTCAGGACTACACACCCTCAAGAAAGATTACCGAGAGTCCTTTTCAGGACTCCTCAATCCTCTCT CTCTCTCACATGGTGCAACCGCAAGCCTTCTGTATAACTTTTGTATTTTACTGACGAATATCAGTACTTT TGTTAAGCATGTGGCAGCTAAAAGTAATATCGTTATTTTTGTGCATGACCAATCAATTTTGAATTGAATC AAATTGATGAAGTTCACCTTGAGGTCATGTTGATTTCAATGAATGCAGGAAAATTATCCAGAAACTTGAG AAAACTTGATGAATAATAAGGAATTTTTTTCATGTGTAGTAATCTTCACGGCTTGAACACAAAATAATCA GAACTGTGTTGTTCTTTCCACCCACCCCTTTTGCTTGATATTCTGTCTGAGTGAAACGAAGAAGAAGTTC AGAATATCATGAATTGTTTTTCCTTGAACAAACTGGTGTATTAGTACAAGTAGTTAATTTCACCTTGAGT CGTTTATTTTTGGGAAAGAGTTATCAAACCTAAAGATAGTAAAGTCTTTCAATTTCATTGGTGCTCAGAG GACTGACTGAATATATGGAGAGCTTGGTTCCAAAAGATACTACATCCATTTTTTATCAAAATTGCTTCTT CTTTTTTTTGCATTAATGTACACATTTCCAGTAGGGTCACTTGACACTTCCAAAAAACTGAATTTCCAAA AAAGGAAAAACAGGTTTTAAAAATCAGTTCAGTGCCAAAAGGTACTATATCCATTCAAGTCATGCATTGT AACTTGCATACAGCATAAAAGATTTTTGGTTGAAAACAGTACATCAAATTTCTGTTCCAGAAGGCCCTAC ATCCTCTCATGACAATATTTGTGCCGACTTAGATTTTGTTTAAAGAGTGGTTTTATACTTGTATCATACA TTAGTATAATCAGCCAAATTATCATTCCAAACTGACATTGCTAACTATAATCATTAAAAAATTGTGTTTT TTCTCAGAACTTGGATTTATGGATGTAGTACCCTTTAGAACCAAGCTCTTCATATGATGATAAACGAAAC GCGTTTCAGTGGGGTGTCAGCAAACTTAGACTTCTGATGGTCTCTTGCATATGTCATATATGCACAAATG GTGTTTTAGACAATGATGTACTCTAAGTGCATTTTGTAAACATACTTGGTCAATGAGACACCACATGTGA TTCTATTATTAAACCATTTCTGACAGTAAGTCCATGACTAATACCCGAGATTGTTGTCTCAAATGCCGAC TATTACTTGCAAATTATAACCTCAAAAGGGTTTTATGAAGATTAGTGTTTGTACCTAATAGCGAACACTC TTTCTTTTTAATTTTAAATTCGGGCTGATATAGAGTACATGTACTTATGAAATGGTAATCAACATTGACA TGTCTAAATTATTCTGTTTGTATATATGTGTAAATATATTTAATGTTATGTAAATAACATGTATTATAAT GTGTGTCTGTAATTAGAAGTGAGTTTTCAAATATTGTTAGCATATATGTATATTTACGTGTACAGTGAAT GTAGATGATAATTTATTAAGATTAGATATGATCTTTAAAAACGATG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds