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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_038211801.1 PREDICTED: Patiria miniata DNA excision repair protein ERCC-6-like (LOC119737443), mRNA TGAAACTACCTTTGCTATGTCACAATCGAATGCAATCGTCGACGGTCATGTAACACTTTAAGCACCGTGT TTTCAGCTTTTTCAGAACTCGTGGTGAAAGCGAGATCACGAGCATCATGAAAATAAGACACTGATGAAAG ATATTGAGACTTGGTTCGTGGTTCCCATAGCTGATAACATTTCTTGTTGTCTACATCGGCAAGTATGGCT TCATCATCTCCAGTAGCAGCTGAAGAAAGCGGCAGCACGTGTACCAATAAGACATCACACGTTGCTTCCA GTAGTGCAGAGATGGACCAGTCCTGCAGCAGGCAAGATATTGGTCTACCAGCACATGTACGAAATGGTTT TGACCAAAGGGAACAAGAAGAGGAACCTGTGCAGAAAATGGACACCGTTGACCAGCCCGGTGTTCCAGAT GTTTTGACCCCAACTGCAAGCTCAACGATCCTAGCGCCAACTACAAGTGCCTCAAGTACAATGGTTTCTG CTGAAAAAATGCAGACACCCAAGACTGCCACTAATGATAGACTGTCAACTTCTGATCACGAGACGCCAAC TGCAAGCTCGTTAATCCGAGTACCAACTACAAGCCCCTCAAGTAAAACCCCATCCGGTGAGAAAGCACGG GCAGTCAAAACAGTCAGTGACAAACTATCAACTTCTGAACACGCAAGGCCAACTGCAAGCTCGTGGACAA AACACCCCGCTGGTGAAAGCAGTCGCGTGATTGCATCTGGAAGCCGCGACATGCCGTCGACAAGCAAGAA GGACATCTTCAGCGTGGACACCAGCCTGATCCCGTCGGTGCCCGGCCAGCTGCAAGCCACGGAGCTTCAG GGTCTGGAGGGGGTCAGCGTCTTCAACCAGGAGGAGTTTGAGAGAGGGGTCATGGAGCAAGTGGACCAGG CCATCACGGTCCGACAGAAGGCCGTGGACCGGGAGAGGGCTGAGAAGGATCTGGACAGGGTGCTGACCGA TATACGTTCATGCAAGAAGGAACTGGGCCACCTGGATAGGGCAATTGCCCTTGCAAACGCTAAGTCCTTG ACGTCTCCAGTAACGTTTGCTCAGAAGGAGGTACAGAGGAACATCATATCCATGCGCACAAAGAGAGACA ACAAGGCAAAGCAGCTGAAGACACTGCGTGCTCGTCAGCGATCACTGCTTGCCAAGCTGAGCGGTTCAGA CGTTGCTCCGCAGGTCTCAGAAGATGACGGAGATGATGAAGAAAGGAATGTAGAAACATACCAGCATTTT CTGTGCAGCAGTCCATCCTCTGACGGTATTCCATCCATTGCGCCGGAGGAGACGGAGCAAGAACGTCTGA TCCGACTCGGCGAGATGACCCCCTTCGGATCAACGGTCCAATCAAAGGCCTCGACAAGCAAGGCGACCAC ATCAACGGCGAAACCCGCCCCAAGGCCTATGACTGACTTTGAGAAGTTTATGGTGCAGAAAACCGAGGAG GACATGACAAGACGCAAGAAGGTCGTGGTGCGGAAAAAGACGCCCATCAAATCCAAACCGGAATCCGTCG TGCCGACGAGCTCAGAGAAGAAAACTCAAGCAGGGCAATCAAGTGGAAAGATGTTTTCATCCAAGACCAA AGCGTCCAGCAAAACTGAAGGGAAAAAAGTTAAGGAAAAATCTAGGAAGCACAAACCGGAAGTCGCCAAG AAGAAATCCGTGAAGGACTCCAGCCAGAGGAAGGAGGGAGCCGCAAGTGACTCGTCGGACGATGGTACGT ATTTCGTCTACAAGCCCGTCCGAAGCGAGTCCTCAAGCTACCCGAAGGCTCACAAGAGACGGAGAAAGGC CAGGGACCTGCGTCCTCACTGGGGGAGCGACGAAGAAATGAGCGACTACTGCGAGGACAGCGCGGGAAGT GACGAGGATTACACGCCGGGGTTTGACGACTTCTCACAGCCATCGGACGAAGATGATGAATACAGCTCCC CACTCCAGAAGAAGGCCAATAACCGCGGCCGTAAGCCCAAGGTATCTACGGAGGATTTTGAGGACGGCAC TATTGCCTGTCTGGATGATCTGAAGAGAGCATACGGTGTCAATGTCAAACGCTCCAGCAGCCACCGCAAG TCCAAGTGCAAGGATGACGCCACTCAGGATATGTACTACCGCAGGCTGAAGGAGCATCGCCGTTCTGAGT TGCTCAAGAAGCAGCGTCGTATTGAGCAAGGGGTAGTGGACAGCGACTCTGAACCAGAAGACATGCAGTT TGATGGAGGGTTTACCGTCCCTGGAAAAATGTGGTCTAATCTCTACAAGTACCAGAAAGTCGGAGTGAAG TGGTTATGGGAGTTACATCAGCAGCAGGCTGGAGGCATCGTGGGAGATGAGATGGGCCTGGGCAAGACTA TCCAGATGATTGTCTTCTTTGCCGGACTGAAGGCCAGTAAAGTACGCAACCCTGGGTCCAGGTACATTGG TGTTGGTCCGGTCTTGATCGTCTGTCCAGCCACCGTCATGCATCAGTGGGTCAAGGAGTACCACAAATGG ATGCCAGAGATGAGGGTAGCTGTCCTACACGACTCGGGGTCTCACACTGGAACAAAGAGGGCCTTGATCC ATGATATAGCCCTGAGCCACGGGACTCTAGTGACTTCCTACTCAGGAGTGCGTATACAGGAAGAACTGCT GCTGAAGCATGACTGGCATTACATCGTACTGGACGAGGGACACAAGATACGTAATCCTGACGCTGCAGTC ACGCAGTCATGCAAACAGTTTCGTACCTGTCATCGGATCATCCTGTCCGGTTCCCCCATGCAGAACAATC TCCGTGAGCTCTGGTCTCTCATCGACTTTGTCTTCCCTGGCAAGCTGGGCACCCTGCCCGTTTTCATGGA GCAGTTCTCTGTGCCCATCACCATCGGAGGCTACTCAAATGCCACACAAGTGCAGGTGCAGACAGCATAC AAGTGTGCCACCGTGCTTCGGGACACCATCAACCCGTACCTACTAAGACGAATGAAGGCCGACGTCAAGC AGAGCCTTCAGCTACCTGACAAGAATGAGCAGGTCTTATTCTGCAGGCTGAGTGAGGAGCAAACCGAGCT GTACAAGGAGTATCTGAACTCCAAGGAGTGCCAGCTCATATTGAACAGGGAGTACCAGGTCTTTGCAGGG CTTATTACTCTACGCAAGATATGCAACCACCCCGACTTAGTCAGCGGCGGCCCCAAGATCATCAAGGGTG ACCAGAGTGCCGAGGCCGTCCTGGCCGCCAACGATCCCAAAATGCAGTACGGCTACTGGGAGCGATGTGG GAAGATGATCGTGGTCAACTCGCTACTGAAACTCTGGCACAAGCAGGGCCACAGGGTCTTGCTGTTCTCA CAAAGCAAACAGATGCTGGATATCATGGAGGACTTTGTTAAGCACACATACTCCTACATGCGCATGGATG GCTCAACCTCCATCTCATCCCGACAACCTCTCATCCAGCAGTACAACAGTGACCCATCCATCTTTGTGTT CCTGCTGACCACTCGTGTGGGGGGCCTAGGGGTCAATCTGACCGGGGCCAATCGAGTGGTCATCTTTGAC CCGGACTGGAACCCCAGCACAGACACCCAGGCCAGGGAGAGGGCGTGGCGCATCGGCCAGAACCGCCAAG TGACCATCTACCGACTGATCACCAACGGGACCATTGAAGAGAAGATCTACCACAGGCAAATCTTCAAGCA GTTCCTGACCAACCGTGTCCTGAAGGATCCTCGCCAGCGACGCTTCTTCAAGTCCAACGACCTCTTTGAG CTCTTCACCTTAGGCTCGGACAGCAGCAATCACGGCACGGAGACTAGCGCCATCTTTGCTGGGGTCGGCT CGGACGTGAAGGTCAGGACAGCCGCCCGTCCCAGCCCGCCGAGGAAGAAGTCTGTCGAGAAGACTAGAGG CGAGAGAAGAGAGGATGGGGAATCTAGAAAGAGACCCTCAAATAAGAAAACCGAAGATGATGCGGAGAAG AAGACTACACTTGAGGATGCAGCTGGCTGCAGCCAGTCCCTGTCAAACGCATCCCAGGACAGCCCGGGAC CAAGCAGAATAAACAGAGGCGCAGAATCACCAGAAGTTGCCAAGGAAAGACCGTCGGAATCGACGGAGCC GCCAAAACCCAATGCCACATCCTCACCATCGAAAAATGGCTCACTCCACAAAGTAGAGAAGAAAAGGAAG AAAAGGAAAGATGCCAGACTTGATGGTCACCGCATAGCCCATTTGGCCAAGCATGCAGCGTATCGCCCCA AGACAGACAAGGAGGAGAAACCAGCACAGACTGATGCTCAGCAAGACGACTACGTGCTCACTAAACTCCT CAAGAAATCAGGCGTGCACAGTGCCCTCCAGCACGACAGCATCATGCAGGCTGGACACCCAGACTATCTT CTAGTGGAAGGCGAGGCGGACCGTGTGGCCAGGGATGCAGTCCAGGCCCTGCGACAGTCCAGACGACACT GCCACCGAGCGTCATCCGGCGTGCCGACGTGGACGGGATCGCGGAACCAGGGAGGCAGCACGCCACCACC TAAAAAACCCAGATTTGGACAGAAATCCAACAATAAGGTTGCTGGTCTTCTCGGTGGTAGCAAGATACCA AAGGACAAAGACAAACAGCAGAAGCAAGCATCTGCTACTCCTACCCCTAAGCCTCAGCACTTCTCGGGGA CCGAGCTGATCGAGACTGCTGCATCTAAGACAAGCACCAAGACAGCCACCCTGCCGTCCTCCCAATCCCT CCTCTCCCAGATGAGGAAGCGCAACTCCCTCACCACCGCCTCAGACCCAGACTCCGTCGCCGGTTCCTCC ACGGACCAACCCCAACGTGAGCTGCTGTCCGATATTAGGGATTTTGTGGCCTTCCAGGCGGGCACCCCGG GCCAGGCCAGCACGGCCGAGATCCTGGGGAAGTTCCAGGCCAAGCTGCCGCCCAACGACTCGGCCCTCTT CAAGTCCATGCTGAAGGAGATCTGCCAGTTCCAGCGGGTGGACGGCGGGGGAGTCTGGAGACTCAAGGAG GACTTCCGCTGAAAGAAGTAGATCTTGTTGCCGTTATGCCTCCTCCACTTTGGTGGATGGTTGAGAAGAT AGAAAACTCAACAAGGACAAATGCTGAAAGAAGTGAATTGGATCACTGTCACACCGCATGCTACAGGGAG TGAAATCCGGGAAAAAACAAGAAGTTCTACCAAAAAAGGAGATCCCTTTGATGATATGTCGTGTAAAAAT CTGCAAAGAGAGACCCAACTGAACACCTTTCTTATCCAGTAGGAACTGAACTTCTCTCGGCAGGGAACAT TTAGAGAAGACATTGCTTCTCAAAGATGTAGTCCCATAACTGTCTTTAGTTGAAATTTTGATCAAGTCTT ATGTTTGATTGACACCGAATTTAGTTTGAGTCTGCCTGAGAGAATGGAGCTTCATTTTTGAAAATGTAGA AAAGAGAAGTTGTCTCCTTGGTAGAGGTTTTGTGTTTGGTATTTAAAAAATGATGTCTTTTAATCTTCCT GCTCTTAAGCATTTCTTTGACAGGAAGAGATGGATTTAAGTGAGGTAGACATTAGTCTGGTAGCCTTGCA TGCACTCTGATCATGGAGGTTGATTGTGTGCATTGATCAAAGTGAGAAATTATGAGGCCAGGTCTATCTT AGTATCAGTTTTTCGTTTCATGATGTTTGTTTTCATATTGGTCAGTTTATGGTTTTGTCAAATTTGTTTA GAGCTGTCAATTGTTTTGGTCAAAGTCAAAGTATTTGATGGTGTGTGAAAATGTTTGATGCTTAGTCAAA TGTTTGATGGTTTGTCAAATTGTTTGATGGTTTGTCAAATTGTTTGATGGTTTGTCAAATTATTTGATGG TTTGTCAAATTTTTGATGGTTTGTTAAATGTTTTATGGTTGGTCAAATTGTTTGATGGTTTGTCAAATTG TTTGATGGTTTGTCAAATTTGGTGATCTTGCCGAAAACCATCTAACACTCTGGCAGCACCATCAAACACT CTGGCAATGCCATCAGATACTCTGACAACGCCATCTATTACTCTGGCAACAGCATCTAATACTCTGCCAA CAGCATCTAATACTCTGGCAACAGCATCTAATACTCTGGCAACACCATCAAACACTCTGGCAACGCCATC AAACACTCTGGCAACGCCATCAAATACTCTGACAACGCCACCAAACACTCTGGCAACGCCATCAAACACT CTGGCAACACCATCAAATACTCTGACAACGCCACCAAACACTCTGGCAACGCCATCAAACACTCTGGCAA CACCATTAAATACTCTGACAACGGCATCAAATACTCTGGCAACGCCATCAAACACTCTGGCAACACCATT AAATACTCTGACAACGGCATCAAATACTCTGACAACACCATCAAATACTCTGACAACAGCATCTAATACT CTGGCAACGCCATCAAATACTCTGGCAACGCCATTAAATACTCAGACAACGGCATCAAATACTCTGACAA CACCATCAAATACTCTGGCAACAGCATCAAATACTCTGACAACGCCACCAAACACTCTGAC
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
