Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01045871.1 TSA: Lytechinus variegatus AMR9006.35718.1.1 transcribed RNA sequence GACGAAATAGACTAATTTAGTCAACATGCGCTGACAAGCCCATGCATGTGAGGAGCGCCGAGGTAAAGCA GCAAGAGAGCGCGGCGGAGCGAGCTGTGTACTTTGGCCAGAAGTTTAGGGTGTGATTGAGACGTGACGCC GATGAGCGCCAACACAGCATTCCTGCCCCTTCGCCCGCTCTCGAAAAGCCAAAGCGCGACTGATCCTGAC TGAATCGCAATTATCTCGCCAAGATACCAGCTACTGAAAATTCTGTGAACATTTGGTGCAAAAGTAAGAC GATGGCCGACACAAGTTCAAAAGATTTGCCTTTCAGGGTAGAGTATGCGAAAAGTAACCGTGCTTCATGC AAGTTATGTCGCAACAAAATCGACAAGGAGTCATTGAGATTGGCTAAAATGGTTCAGTCTCCAGTTTTTG ATGGGAAGATACCAAATTGGTTCCACTTCCATTGCTTCTTCAAGAGGAACAAACCAGAATCCCAAGCAGA CATTGGGGGCTTTCCCAGTTTGAGATGGGATGATCAACAAAGGATCAAGGAGACATTGTCTGGAAAGAAG CCTGGAGGATCGCTTAAAAGTGCAGATCCCGATGAAGGAGGAGAAAGTCACAAAACACTGACTCAGTTTA CTGTGGGTTACGCTAGTTCTGGACGAGCAAAATGTCTTCGTTGTGGAGAAAAGATTCCAGAGACGACAGT TCGAATCGCCTTTATGGAACCGGTAGAAGAGTATCAGCCAGTACCCCGCTGGCATCATGTGGATTGCTTC GTTGATGCAAAGTATATGGAGAATGATCTTAGTGAATGGCCTCCTAACGGTACAGCCAGTATGCTCACAA GCTTTGATCGCCTCAAGGCTAAAGACCAGAAGATGCTAGAAGAGAAGTTCAAGAAGGCAATGCCAAAGAC TAAAGGCAAAGGAAAAGGAAAGACAGGTCCTCCTCCAGCGAAGAAAGCTGCTCCAAAGCTCAGTAAACTA GATCAAGATCTCAAGACCCAGAACGACCATCTTTGGGCGATCCGTGACCAGCTTTACCGATGGGTTAAGA ATAATGGACTGAAAGACATGCTTGAAGCTAATGATCAGGAAGTCCCTCCAGGAGAAAGTAGGCTTCTTGA CAGTGTGGCTGATGGCATGATGTTTGGTGCCCTTGAGAGTTGTCCCGAATGCAAGAATGGCCAGCTGGTT GTGAGCTCGTCTGGTCTGACCTTCAAGTGTACTGGTAACCTGACATCTTGGACCAAGTGTCAATACAGAA GCAAGGATGTCCAAAGGAGCAAGACGTGGCACATTCCGGAATATCTCAAGGAAGATACTGATTATTTGAA AAGCTTCAAATTTGTTGCCTACAACAAGGGTAAGAGATTATTTCCTGAAGAGGAGGAAGAGGCATCTGGA AGCCAAGATGGTGCAGGAGATGGAAAGAGGAAGTTAGCCAAGAAACCAGAAGAGAAAGCCCTTCACAACT GTACTATTGTACTTCATGGTAAATTATCCAAGAGCAATAAAGATCTGAGGACAGTCATCCAGGGTCTTGG AGGTGATGTCGCAACTAAGATCACACCGGAAACAGCGTGTGTTATTAGCACTGAAGCTGAAGTAAAGAAG ATGAACAAGAAGATGAAGGAAGCCAAAAGCAATGATGTCCATGTTGTTTCAGAAGATTTCCTAGATGCTG TTAAGAATGGAGGAGCAGCTCTGATGATCACTCAACATAGTATCTGTAATTGGGGATCAGATCCTACCAC CAGAATTGCTGATACAGTTGCTAGTCAATTACCAACTAAGAGTATTGGACAACTTCAGAGGGAAAGAGAT GAGTCAAAGTTCACTGCAGTTTTGCCGAAGACCTCGAAGATGCAGCTGAAAGGAGGAGCTGTGGTGGAGG ATCAAAGTCTAGGTCTTTCAACGCATGTGTACAAGGAACGTGGCATGTTATACAGCGCAACATTGGGTCT TGTTGACATCAGCCGAGGAACTAATTCTTTCTACAAACTGCAGCTTATCAAACATGATACACAATCCCGC CACTGGGTTTATCGAGCATGGGGACGTGTTGGTACTACAATTGGAGGAAATAAGACGGAAGACTATGGAT CTAACTTGGACGGTGCAAAGGAGATGTTCAAATCTCTATACCTAGAGAAGACTGGTAACAGGTTTGGTGC CAAGAACCCTGTCAAACATCCTATGAAGTTCTTTCCTCTGGACATCAGCTATGAAGAGGAAGAGGAGCGA ATTGCATCGAGTAAAGAACGTGCAGGAAAGACATCTAAGCTACCCAAACCGATCCAGGATTTGATGAAGA TGATCTTTGATTTAGAGGAGCTCAAGAAAACTATGCTGGAGTTTGAGATTGATCTTGAGAAGATGCCTCT CGGAAAGCTGTCTAAGAAACAAATTGAGGATGCTTACAAAGTTCTTACAGACCTTCAGAAGTTGGTGACT GATAAAGCCACTCGATCGGCCATCTTGGATGCGTCTAATCAGTTTTACACACTCATTCCACATAACTTTG GCTTGAAATCTATTCCACTTCTTGATACACTTGACATCATCCAGGCCAAGACTCAGATGCTGGATAATCT GCTAGACATTGAGATCGCATACAATATGCTGAAAGAAACAGGAGAAGCTGGTACAGACCCTATCGATGTT CACTATCAAAATCTCAAATGCGCCATGGAGGTGGTTGATAAGAAGAGCGATGAGTTCAAGTTGATCAAAG ACTACACTGAAAACACCCATGCAGCTACCCACAACTGGTACCGTCTGTCTGTTGAAGAGGTCTTCAGGAT CGATAGAGAGGGTGAAGGTCCAAGGTTCAAACCTTTCAAGAAGCTTCATAACAGGCAGCTACTATGGCAT GGATCCCGCAAAACCAACTTTGGAGGAATCCTCTCCCAGGGACTTAGGATTGCCCCTCCTGAAGCCCCAG CAACTGGTTACATGTTTGGCAAGGGTATCTACTTTGCTGACATGGTAACAAAGAGCGCCAACTACTGTTA CGCAAATGCCAGCAGTAACATCGGTCTCATGCTTCTCTCGGATGTTGCACTTGGTGACATGTATGAGCTT CGAGGGGCAAAGGGCATGTCAAAGCCACCTGCCGGAAAGCACAGTACTAAAGGTCTTGGACGTACCTGTC CCGATCCCTCGGGCTTGGTCACCATTGAGGATAATCTTCAAGTTCCTATGGGGAAGGGTACTGATAGTAA TATCAACAATACCAGTCTTCTTTACAATGAATACATTGTATACGATGTTGCACAGGTCCAGATGCGCTAC CTTATCAAGATGAAGTTCAACTACAATTGTTGATATGCATGGAAAATTCAACATGGAGAGAGATTTACCA GCCAAAGCCAAAAAAAAACAAGACGGAGGTTTTCGTTGCTTACAGTGTATTCAGTTGGGAGAGTGGAATA CAAGGCAGAGATATCTGAACTATAATAAATCTAAAATAGAACTAAAGTAGATATATGATTATTGAAGAGT GCTTTATTTCGCTGGATGGGACACAAATGGAGCAGATATTGAAATGCCTGAAGCAGTAGCTGTTTCACAA TAGTAGCTAAAATCAGAAAAGTTAATTTGGACTCGAGAATTGTGTGTGAATTGTTGTTTTCTGCCTTATT TAGAATTATTCATCAGCCAGTGCATCATTTTCGGTACCAAGCCATCGAGAGGTTTATAACATGCTTTTAT GGATGAAGTGCTCATCTATGTAATTCAACATTATGATTCAGGTTAAATCAGAGTATGTGATAATAATCAG GATTGTTTTTTAGGGGGAGGGGGACAGCAGAGCATGTTTTTTAGACATGTTTTTCCCTTCATTTTTTATC TAAATATATTGTCTAGGCACTTTCTTTAGACAAAGTATTGCTTGTAACTTCCTAAAAAGGCTGTTGGTGG ATAAGTATACATTGTTTCTATATATTTCAGTTGAATCAGCTGCTTACTGGTACTCAACAGTAACAAATTT TAGCTTACGAACACAAGGATTTTGTATGGGTCTCGCCTACATATCTGAGCAATTCCTATGTGACCTGGTT TTTGTTAGAGTTTTGTATGTGATACACTTCTTTTCTGTAATTTCAGCATTCAAGTGCGAGGTAAAATTAA GCTGCGGTTGAGTTCTTTGCCTTGATTTTCTTATTGATATCATTAAACTTCTGAGCTACTGCAGAAATTC TGACAGAACAAAAACTAATTTCTGTGTCCATTTGGAATAAAATGGCAGTATGATAAAGAAAACTATGAGA GTAAAATTTGTAAAACAAATTACTGAGGCATGTCATCGAAGTTTTGTTGCTGTAGTTAAGGAAAAGCAGT AGGCTGTCTATTCTTCACATACATGGTATCCAACATGCCTTTTACTTTAGAATTAAAAATACGCTGTAAT GATTATGCTTGAAAAAAAATTTCACATTCATTTCATGATTATTACATTACTTTATCTTGATGTACCAAGG TGAGTTTAATAGTGATGAATCCTTGATGTTTTGTTTCAATGCAAACATACCCATGATTTCCTCTCAGATG TTTTCTATGAAATTAAGTTATTGTGCCGAGAAATGCCAATAAATACAAGGATGTGTATTGCAAAAATGCA AAGGCTGCTGGAACTGTATGAAATAATTTGTTGATCCTTTTTACATTATTGTTATCACATAGTCTTTTGT TCTTGTTGCCGTAAATCTTGCTTCTTTTTTTTTTTACCTTCATAATCATACATGTCCAACCTCTTTTTGT CTTCTGTGTTTTTCATCTTGATACCAATTTGTTTGTATACAGATATTAAGAACAAGAAAAATAACCGTAC TATCTAGGCATTGTAGATATCCACAATGCAATTTTTTTTTTCTTTACACTTTTTACTTTTACATGTATTT GATGTCATACTCTACTTTTCATGTCTTTCACTTGTAAAATTCCTCTTTGTATTACTATTCTATGAAAAAG ATTGCCATGTTTTTGTATGCATTCCCCTTTGAAAATTTTTGTCAAATTGATATAAGACAGGATTGTATGT TATCAAATTGATATTCAAAGAGTAATACCCAAATCAGCTTGCTCTTGTGATACACTGTAGTAAACCCATA GAATACAAGGGCATAAATCAATGTGCTACGATTTCTAACATTAAGATTTTTTTTTCTAACATGCTTAGAA ATAATTCAGGCATTTCAGACTACAGACAAAGATTTGTGATTTGAATTATAGAGTACCTATAGGTATATTT ACATTATACCTAGTGTAGAGTAAGGCAAATAATATCGTAGACAAAGTTTGTTGCTATTATAATTCATATA CATATTTAGGTTCATATCTTACATAAAGAATTATGCATGTCCACAATTCAAAAATAAGAAAAAAAACATT TGAAACATTGATTTGGGCATATTTTTTCCTAGAACTGTGTAGTAAAATACAGATGTGCCATAGTTATTAA AAATAATTTAGTTCTAAATAAAGTAGAAAATATTTTATACAGAAAATGCTTATTCACAGCAGTGTTCACT TTACAATAGCGACTGGAGAAGTTTTATTACTGTCTTTAATATGTGTAGTAAGTCATACATACATTGTAGA AGTTGTATCATTAAGTACATGATTTATGTGCCTCACGTGTGTTAAAAGTGATGAAATTTTATATCTTTCC TGAAAATACTTCTTTATTCTGTCAAAATCATGAGGACCCATCAGACCTTGTAAACCATAACAGCTGATTA CTTTATAAATGTGTCTACTATGAAGTGTAGGTGCATCATCTAGTTTGTAGATGACATTTGTTCTTGTTCC AAAGGCAGATGGAATAGATTTCTATATTGTGCAGAAATTTGAATAAACTCATCAAATTTAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds