Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT096830.1 TSA: Strongylocentrotus purpuratus WHL22.765051.1 mRNA sequence TTAGTGCAATGACTCAGAGGGTCCTCAGTTTGTCTGGGTCTACTTCATTCCACTCATCATTCTGGGTTCA TTCTTCATGCTCAATCTCGTTCTTGGAGTTCTCAGTGGAGAATTTGCGAAAGAAAGAGAGCGAGTGGAGA ACAGAAGAGCGTTCTTGAAACTGCGAAGACAACAGCAGATAGACAAAGAGCTGATGGGATACCTAGAGTG GATATGTAAAGCAGAGGAAGTTATGCTCAATGATAAATCAATATCTGAAGAAGAACGGGAAGCAATTGAA GATCGGCGGCGTGATGCCGCTACAAGAACAGAGGATCTGGGTAATGGCAAACCATCAGGTGCTGACGTAG CATCTAGTTATGACTTAGAAAAAAAGAAAAAGAAGCGGAAGAAGAAGTTTGTGCGGATCAGACGTGCAGA GAAACGGTTACGCTTCGCCATTCGTCATGCGGTCAAGACGCAGGCTTTCTATTGGCTAGTCATCGTCCTT GTATTTCTCAACACCATCTGTGTAGCTATAGAACACTACAACCAACCCCATTGGCTAGAACAATTCTTAT ACTATGCAGAAATAGTGTTCCTTTGTATCTTCATAATGGAAATGGTCATAAAGTTATATGGCCTGGGGCC TGGGGTCTACTTCCAATCAGCTTTCAACAAATTTGACTGCATTGTTATATGCGCGAGCATGTTCGAGGTA ATCTGGACTAAATATAAAGAAGAGTCATTTGGCCTTAGTGTACTTCGAGCTCTTAGACTCCTTAGGATAT TCAAAGTAACAAGATACTGGTCCTCCTTGCGGAACCTAGTGATATCCCTGTTAAGTAGTATGCGTTCCAT TGTTAGTCTCCTCTTCCTCCTCTTTCTCTTCATCCTCATCTTCGCCCTCCTAGGGATGCAGCTATTCGGT GGAAGCTTCAATTATGACGCGACACAGGCAAAACCTTCCAGTAATTTTGACACCTTCTGGATAGCTCTCA TAACAGTATTTCAGATCCTAACTGGGGAGGACTGGAACGTCGTGATGTATCAGGGCATCAAGTCCCAAGG CGGGGTACCAAACGGAATGTGGGCGAGTATCTACTTCGTCATTCTGGTGCTATTTGGCAACTACACACTG TTGAATGTCTTCCTTGCCATTGCCGTGGACAATCTGGCCAACGCCCAGGAGCTGACCAAGCTAGACCAGG AGGAAGATGAGGAGAACAGGCAGGCCGCTGCTAATGAGCTCCTGGAGCTTCAGGCCCAGCAGACACCTAA CATGAGCAGGAGAGGATCTCCCAACCCGGATAACCCATCAATTGAGGATGGCACTAACATACAGCTGAAT GACATGAAAGACCCACAGAGGATGAACGGAGATCACAACGGAGAGATGGTAGAGGAAGACGATCCCAGTG GCGACTCCAAGAGCTGGTATCGGAGGCTTTACCATCAGCTGAATGTTCACGGCGTACCTTGGCTGTGCCC ATCCTGCGATAATTGTCACTGTCCTTGTGTTTGTGAGTGTAGCTGTTCCTGCCAAATGAGAAAGAAAGCC AACAACAACAAAGAACAAGAAGCGGAAGACGAGAACGATGAATCGTTTCATCCCAAGCCGATGGTTCCTT ATAGCGCCCTCTTTATATTTAGCACCACCAACCCTGTACGCCGTTTCTGTCACTACATAGTCACACTACG CTACTTCGACACGATGATTATGGTTGTGATTGCCCTTAGTAGTATTGCCTTAGCTGCAGAAGACCCCATA GATCCCGACAACAAAAGAAACAAAGTTCTAGAATACTTTGACTACATCTTCACAGGAATCTTCACCATTG AGATGGTACTGAAGATCATGGACATGGGTCTCCTCCTTCACAAGGGCGCCTACATGCGAGACCTCTGGAA CATCCTGGATGCTATAGTGGTTGTTTGTGCCTTATTTGCTTACGCCTACCGGGGTGGTGGAACAAGTGGA GGACCTCAGCAACTGAACACCATCAAGTCACTTAGGGTACTGAGGGTGTTACGACCGCTCAAAACCATCA AGAGAGTTCCAAAACTAAAGGCCGTGTTTGACTGCGTGGTGAACTCGGTGAAGAACGTCACCAACATCGC TATCGTCTACCTCCTCTTCATGTTCATCTTCGCCGTCATCGGCGTCCAACTCTTCAAGGGAAAATTCTTC CACTGCTCCGACCTGTCTAAAGTCACCGAGGAAGAATGCCAGGGAAGATATTTCTTGTATGAAGGAGACC AAATTAAAGAAAGTGCTGACCGAGTGTGGGACAAGTATGAATTCAACTATGACAATGTCGCCTTAGCCAT TCTCACTCTCTTCACTGTGTCAACTGGGGAGGGATGGCCAGATGTTCTGAAGCATTCTATTGAAGCTACA GAGGAAGGAATGGGTCCCACTCCATACAATCGGATTGAGATGTCACTCTACTACGTGGTCTACTTCATTA TCTTCCCTTTCTTCTTTCTCAACATCTTCGTTGCCTTGATCATCATCACCTTCCAGGAACAGGGCGATCA GGACTTCTTCGACGGTGAAATCGATAAGAACCAGAAACAATGCATAGAATTTTGCATCACTGCCAAGCCT GTGGACAGGTTCATGCCAGAAAACAAGAATTCATTCCGTTTCAAGGTGTGGAAGTTGGTAGTGTCGTCAG CGTTTGAGTACTTCATCATGACTCTCATCACGCTAAACACCTTTACGTTAATGGTGAAGTATCATGGCCA GCCGGAGATTTACTCAGCCATTCTCAAAAACCTCAACATTGCATTCACTGTCCTCTTCACGATAGAAGCC ATGCTCAAGCTTACGGCATTTGGAATAAGGAATTACTTCAAGGAGGGATGGAACACGTTCGACTTTATCA CGGTGGTGGGGAGCGTGGCCGATGTCATCATTTCAGAAGTTGGGGACGGTTTCATCAACCTGAGCGTGTT GAGATTATTTCGGGCAGCCAGGTTAATCAAACTTCTAAGACAAGGTTCCTCAATTCGCATTCTTTTGTGG ACCTTCATTCAGTCATTCAAGGCCCTACCATGGGTTTGTCTGCTGATATGGATGCTGTTCTTCATCTATG CAATCATTGGAATGCAGATTTTTGGTAACATAGCACCAATAGACGGACAGCAAATTAATCGTCACAACAA CTTTGGCCAATTCTTCTCGTCGTTACTGTTGCTGTTCAGATGTGCTACAGGCGAAGCATGGCAATCCATC ATGATGAGCTGTCTACCAGGCGCTGCTTGCGCTGACCCGGACCCTAATAACCTATCTGGTATCAAAGAAT TTGATACTTGTGGCTCCTACTTCTCCTATGTCTACTTCGTGAGCTTCAGCTTTCTCTGCTCTTTCCTTAT GTTGAATTTGTTTGTTGCTGTCATCATGGACAACTTTGATTACCTGACTAGAGATGCATCTATTCTAGGA GCTCATCATTTAGATGAATATGTCAGGATCTGGGGCGACTTTGACCCCGTCGGAAGTGGGAGAGTGCTGT ACAAAGATATGTATGACATGTTGAAGAACATTGAGCCTCCAGTGGGTTTTGGTAGGAACTGTCCGTACAG AATTGCATATAAGCGCTTAATCCGGATGAACATGCCAGTAGATGAAAATAAAATGGTACAATTTACATCA ACGTTAATGGCCCTGATTAGAACAGCCCTAGATATCAAGATTGGATCAGTGGCTGATCGAGATCGTCACG ATGCTGAGCTGAGGGAAGCAGTCAAGTGTTTCTGGCCTCACCTCTCGGGTGACAAACTAGACCTTCTGGT GCCTCCAGACAGCGAATTGATTGGAGAGAAGCTGACCGTGGGGAAGATCTATGCAGCACTTCTGATCTAT GAGACCTGGAGAGAATACAAGGCCAAGATTCAAAGAGACGGACATGCTAGAACGGTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds