Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041613177.1 PREDICTED: Lytechinus variegatus microtubule-associated proteins 1A/1B light chain 3C-like (LOC121418945), mRNA CCGTATCATATTGAGCGAAACAGGGAGCTCGAGCTGGAGCGCGTTTGAGAATTTTGTTTACTTTAGCTTG CTGAAGAACTGTTCCACCGTCTGGCAGTCTGGATTTTATTGGAGCTAATATCTAAAAATTTCAAACTTAT CTTGCCAATCGCTGCTAACGTTCCCCGTGGATTTTTAGAGGTGAACTGCCACGATGGGAACAGACAAGAA GACAATCGAAGCTGAAGAGAAGGATGAAAAAGTATACAAATCTTTCAAGCAACGCAAAACGTTTACTCAA AGGAAGGAGGAGGTTGCAGGCATAAGAGCAAAGTTTCCAAACAAAGTACCAGTGATTGTTGAAAGGTACT ATAAAGAGGTTCAGCTTCCTTTGCTGGACAAGACAAAGTTTTTAGTACCACAAGAACTCACAATGAGCCA GTTTGTTACAATAATCAGAAATCGAATGCAACTCACTGCCACGCAGGCCTTCTATCTGATAGTTAACAAC AAGAGTCTTGCAAGCATGTCTACTACTCTAGCAGAGATCTATCGAGATGAGAAAGATGAGGATGGTTTCC TGTACATGGTATATGCTTCCCAGGAGATGTTTGGTTGCTGAAAGACCGCATCTGTGAGCTCATCTCTTTA TCACGTTGCTTTCTACTCGCCTTTATGTCTTATTCCAAATATTTATGTACTATTCTATTTTTCAGCATTG TTTTTTTTGTCCTTGAATTGTTTTGCCTGCCTGAAGATGAGCAAATGAAGAGAAAATCTTGCATGAACTC AGAATGCCAAAGCGCAAAGCATGAAGCAAGATGTGTGTGCATGAGTGGATGTACATGTATGTATGTACAT AGGTGTTTATGAAGTAAAGGGGTCTTGCCAGGCATCATGCACCGGTGCTGGAATGGAAAACATGTACGGA CTGAACAAGATGTCATTCAAGAATATCAGCAGGTCTCCAATTATGTAACAGAGTACATGTATGTGAAGAT GCTCCCAGTTGATGCAACATTGTTATTATGTTAAAACATATGTAAGTGAACTCGATTGAAGCTTCAATTT TGTACCTGTCCATTGTGTATGTTATCTTAATACTGAGCATTCAGTATGTTCATGCTTAAGATTCAAAGCA CACTTAAAGTTTTGAAGTAAGACAAAATTCGAAATTGCAGTCCACAAGAGTATCGCATGTACATGCTAAA GAAGTCAATTTGCTCGAGAGGGTGCTGTAATGTATGAAAAGCCTAATCAGCATTAATATTTTGAACTTGA AAGGTATACTGTAAGTTTATGATAGATTCTTATGTCATAGAAAGCCAAGGTGTCATTTGTCTAATATTCC TATCTTAAACTTGGGATTTTACCGAAGAAAATAGCTAGGAATGCATCAAAATGTTCCACTTGACTTTTCT AGAGGTCCTCCAAAAAGCATCATTTATGATTTAGTATATTTATGTCTACTGATGGGGGAAAATACATGTA TATACAAGAAAGTCTGTTTTTGTGTCCTAATGCAGGGTGCTACATAACGTTTTAGATTCACTTGTTGGGC AGGAAAATTTTTTAATAGTTTGAATATACTTGCCCAAAAATCTATTTCACTTGCCCGAAAAATCCTTGAA AAAAATGTTTTACCTCTTCAAAGAAATATAGTACGGTTTAAGAAACCATTGACCTTTTTTTCTCTCTTTT GACATGAACTGATGAACCTTGTTGCATTTCTTTTTACAAAGTAATTTTATCTTGCCCGCCATGACCATAT TTAGGGTGGGTATATCATATCAACCCTAATTTTGGTAATTCTTCTGTGAGAATTTTGCTTGCCCTATTCA GGGAAGTGCTTATGTAGCACCCTGCCTAATGCCAGCCATCAATTAATCTTTTGAACATCTCAAAATACCC TACTTATTCGTTATGGGAATCTTTGTAGTTAGAACTATCTTCTGTTTTGTGAAAGTACATTGGCCTGCTG ATTAAAAGATGAAGACAGACAGATTTGGCTTGGGTTGAATTCTTCATGGTACCAGGCTATTTTTGCATGC TGTCAAAAACATGGAGATCAGAATGGGCATGATACATACTTAGCATCATAAGCCCAAGCTGGTATATTCC ATGTGAATAGCCCCACTTCGGTTGATAAAAACAGGGTTTATTATCAAAACTTTTTCTAGAATGACTGATT GAGCTAGAATCTTGATGAACTTTTCAAACTTGGATTGATGGAAACACACATGTTGAATTGAATCAGATTA ACACTGGTGTTACATGTAGTATGTAGATAACCCTTTACAAGTAAAAATCCACCTTTAATATGCATTTATG GGTGAAGATACATGGTATGTGTTCATGAAAAAAAATACAAAAAATAAAAGTGCTTGCTTTTGTATTTTAT ATTTTTTCATATTCATATTTGATTGGTTGACATTTGTTTTCTTTTTGGGGTATTTTATAATTTCTTTTTC AATTGAGAGTAAAAAATTGCATAGTACAGTACATGTATGAATATGTATGCTTTGGTGTACGACATACCAT AGCTGTTATGTTTCATTTGGAAATTGTGATTTCTTCTTTTTCCTTTGATTAGAAAAGTTTGACAGTAATG GATCTAAATGTATACATTATATTTTCAGGGTACCGTACATCGCTACATGTATGCTTTTCCCAGCAATATA AGACATGTGCAATTTTCGCTACATGTAGGTTTTGCACTTCATTTTGAACATTGTTTTCATTGCCACCTAC ATAAAGAGAATACCATTAGCATTGTATGGAATTCCAATTTACAGAGTTGCTTGGTAAGATTGAGAAAGTC ATTTTGACTTCTCTATTGATTTGATATTAACCTGCGTGGATGGTTAAAGGATTTCCTTTTTTAGAGGACT TGAAAAACCACCTGCCTTGCTTTAATCACTTTATTCCTATCAATCCACCATGAAGTAAGGAAAATATTTC TCTGCCATTGACCTTTCTTTTCAGTCAGGTCAAATGATATCTTATCAGTTGTTTGTGAAAAACAGTCTAG CAACACCATTGTTATGGTGAGCTTGTTTGTTTTCAATACATTTGAATGTACATTTGATTGTCATTTGTAA GAAAGAACAATGAAAAAATGAATAATAAGCTTATATTGTTGTTGTGTTGTGTTGTAGTGTAGAGAACAAT TTAATTTGTTCATTGAAATTTGCTTCAGAGAAATGGTAAAGTTGAAGACATCATCAGCCTCCCACTCCCT CGAAACATAAATGTCACTTGTGAAGTGTGTCGGATTCAATGATTTGATTAAGTAAAACAATTTTCAATAG ATCTCTTTCCATGTAAATATGTTGGATAAGTAAAGAAAAAAAATCATGAAAACATCTTTGATATCACAGA ATATTGTATGTCACAGCATGAAAGAAAGAATCTTAAAATGATAATTAATTTGATGAATTTGAGTCAACCC CCCTGACTGTCTGAACTCAACTCCAAGACAAGGTGCTAAAACAACATGCCAGAAGTAATTTTGATGAAGG GCATATGTAAAAAGAATGTGTCAAATAAAGCATTGTGAATTTCAAAATATGTACACGGATGCCAAGTAAA GATGTTCTCCCAAGTCAATTAAAAAAGTGTTCTAAGGCCTGGTTACACTGGCTGATGCATGTAAAATGTA CTCCTAATGGATACAGCAGACAAGCAAAATTTCGGGGTTGCTCCATCCGTTTTCATTCGCTCCAGGCAAT GGATGTAATGGGCGAACAATGAAATCACAGCCGATGGATGCTCGATGGACATAGGGCGTATGAAACACGT ATGCAAAGTGTACACATCGGATACATAACGTTTTCCAACGGATTGCAAGATTCTTTTACATCTTCTCTGC ATCCGCAAGTGCAGTGGGACCAAGCCTTAAAACATGTTAAAAGGGATGATGGTATATGTATGATACAGTA CAAATCTGCGTATAGACCAGGCAGTCCTCAGCATATCTTGGACTGAGTAGCATGTGCAGCATTTATTAAT TTTTATGTGAATCAACATCCTCTTTTGGTCATTGTTTTCGATAAGTCTGTGATGTGATTAAATGTACATT CATATTGGTGTCCGGGGAAAGGCAAGAGTATCACTGTATCTCATTTTGAATATACATGTAATGCATGTGA ATTTTGTTTAGAACATGGAAAGAGAATGAATCAAAATTTTGTGAGGATTCTGTAGTTTTATCACTCTTAT GTAATCAACTCACTCATTGATTAATTTACATGTGTCAGCTTGGCTGAATTTGTAACTGGTTTTATGTTTG AATTGACTTTGAGTGTGATGACAATTTTCATTGTTTAATGTACAGTAGATTCACCCAGTCCCAGTTTACA TCATTAGTGATATTTCCTTAACTTGTGCATTGCAAACAGTAGTGTTGTGGGAGTACTGCACCAAGCATTT TACATGAGTGTTAAATTCAAAGTGCTAGTTCAACACCTACTGTAATATTGGTGTTATGATAACACATCAT CGGTGTTATATTAACATTATTCGGTGTTGATAATGGAAATTTCAAGCTAGCTTTGCTGCTGGCTTAGTTA GATGGTAACTGGCATGCATAGAATTAAGCAGTCTTTTAGCTAGCATTTACTGTTCACTACCTTAATTGCA ATTGCTTATTAAGTGAGCCACCGGCTAGTCGCTAGCACACTTAAATTTCTAAAAGGAATATATTCAACCT CCTTGGTGTACTTGTAAGTTGTAACATGTTAAGGTGCGCTCCTCTCACAACACCAACTGATTGCTATTCT TAATATAGAATTGACCGTATGATTATGCAGTACTACTACATAACGATATTAAAAGCAAAAATCTGAAAAT TGACATTTAAATGCTCTACAAGTTGATTTCCTATAGTTTTCTTCATAATTTTGTTCTATTTTCTTTTAGA AATTTACGTTGAGTTCTTAGTTCTTAAAATATATTTTCAACCAGAATCATCCACAATTTTGATTAGAATG GTTTTAGAGGTCTGTTATATTTTTTAATCGATATTATCAAGAACTGATAGAAAAGAAAGAAGAAGATGCT AATCATGTCTAGTCTGTTCATATTGCATTGCCTATTTACCTGTAGATCACTAATGATTAGTAGTTTTCTT CCAGAATGTATCGTACAGTACAATAGAATGTAAGATTTCATAGCTTTCAATGTACATTGCGTTTGGGTAT ATTTTTGACTGGATTATAAAGCATGATAATTTGAATGTTTACCATGTTGCATTTATTGGTGCTGGTAATT TTAATGTCTATTTACAAAGGCTTCCATGATCATAGTTGTATGCAGCCAGTAGGATCCACGATGCCGCTAT TGCATTGCAGTACATGTATGTATCAGACAATGACATTTGAAATATTATGCCAGTTCAGACGAAGAAACTT GATTTATTTAATGATGGAATGTGGCATTTGAGACTTTTTTTTCTGCTGTAAAATGCCTTTGGATGTTGTG TTATTTGATCTGGCCTGTGGAAACAAGTTAGACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds