Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041607827.1 PREDICTED: Lytechinus variegatus ankyrin repeat domain-containing protein 50-like (LOC121414764), mRNA CATAGGCCTTGCAGGGAATTCGAGCGAAAATACAAGCCGCATGCATTTTGCATTGCTGATTACCGACACA CTCAGCAGACGACATCCACTGCTGCTGTCGTACCGTGAACCCATTGTATACCCACCACGCACAAAATTTA TATGGATTTACAGGATATTTTATACGGAATATTATCAATTTTGATTTCATTGCATTAGCATCGGACCTCT ATTACAGGAGTTCACATTCAGACTTATCATCTCCACTTGAATCATACTGACTGGTTCCATGACTTTCAAG TTGTGCAAAGTGGAAATGGATATCTACTGGGATTGGAGCTCAGAGGTGAAAGTTAGATAAACTGTTCGAC ACAGAGGATTCTAAAATAGGAGCGTGTCAAAAGTTCGGGATCAAACAAATCATTTTTCCATGATGACGAC CTGCATGCTTCAAGGGAAGCGGTTCTACTGCCGTGAATGGGCCTTCCAGAAGCTTGTCCATGGCTTGGAC AACAGACAGGCTTCAAGAACATGTGGAACTCTAATTATGGGAGGGCCAGGAAGTGGAAAGACGGCGGTCT GCTCCGAAATTGTCTGGCCGACTAGTTCGGGGAAGCAACGTAGCCTTACAAAGAGGATGCTGGCATATCA TTTCTGTGAGGCTCACAATCGAGAGTCCCTGTCCGTGTCAAAGTTCATTCTAGGACTGGTCAACATGATC ACACGCTCCACTCTCATCCATGGCTATGACGAGAAGCTGAGGGACCCAAGTGTGCAAGCTGTCCTGGAGC CTGCTGCCTGTGAGCGTAATCCAGATGAAGCATTCAAGAATGGAGTCTTGGTGCCTCTTTGTTCTCTAAA TCCACCATCTCGTAACTGCTTCATTCTTGTGGATTCTTTGGATGAGGCTTATCCTGCGATGGAAGGAGAT AGTCCTGCAGGAAGCAGAACCATTGCAGAGCTTCTTGCAAATCACCATGAACTTTTTCCACCTTGGCTCT GCCTCCTGTGCAGTGCTCGCCGTCAAAGTAAGACTGTTACGCGTATGTTCACAGGTTTTCGTAAGCTCAG CCTGGACGATCTTCGCAAGTCCCATGTAGTGAGGGATGTACAGCAGTACATATTGAGGAGACTAGATCAT GAGGAGGCAATACGTACGCAACTGAGTAAAGACACTGCAGAAATGCTGAATCAGTTGCACATCAAGAGCA ATGGGTGCATCATGTATCTGGAGAAAGTGCTGGATGGAGTGGCAGATGGCTTCATTTCACTTCAAGACAT CACTGAAATTCCAGGAACTCTAAATGGATTGTACCTATGGTTGTGCCAGCGTCTGTTCCTGAAGAAACAG TTTGCGAAAATCAGACCAGTTCTTGGAGTAATGCTTGCTGCTCAGTGCCCTCTTACTGAGCTTGAACTTT ATGCATGTGCTAAGACTCGTAATTTTGCCCTGACAAGAGAGGAATTCCAGGACAGGCTGAAGATGATGTG CAAAATTCTGGTGAGAAGTAAGGACAACCGGATTCTAATCTTTCATTATAGCTTTTCTGAATGGCTGCTT GATGTCAAGTATTGCACACAGAAATACATGTGCAGTCTCACTGAAGGCCACACCATGCTTGCATTGAGGT ATACATGTAGTGCTCCAGACTTGACTCCTTCGCAGGTGCAGGACTTTGCAAGAAATCTGATCCAAGCAGG GATTTCACCACCTCTAGATAGTAGCCATCTAGCACTGTGGCTAATTTGGGCTGGTACACCACTCTATGAT TGCCTAGCTTCTCAGTCCCCAAAGGATAAGCAAGTCACACAATTATTGGTCAGTGCTGGTGCCCGAGTTG TAGATATGGACAGGAATTCTTTGATTCTCCAAGATGCTCTTGAGAAACAGGAATCTCTACATTCACTCAT CAGTAGTGGTGCATCAATAAACCAAGTTGATAGCAATGGTCGTTCACTTCTTGCCAATGCTGCCTACAGC GGAAATCTTGAAGTCGTTCAATCGTTACTCATCTATGGTGCAGATGTTGGAGTGACTGATAGGACAGGCC AAACAGCTCTTGGGTTGGCAGCTCGACATGGACATGTGGAAGTTGTTGCTTTGCTGTTGAGCCATGATGC TGAGGTTGATCATGTGGATCATGATGGATGGACACCTTTGCGCTCTGCAGCCTGGGCTGGCCATACAGAT GTTGTTACAACACTTCTCAACAAAGGAGCAGTAGTGGATTGTAGTGATCACAATGAAAAGAGAACTGCAT TGAGAGCAGCAGCATGGGGCGGTCATGCAGATATTGTGAAAACTCTTGTTGATCATGGTGCCAATGTCAA TCAAGCTGATCATGAAGGAAGGACTGCACTTATAGCTGCAGCATACATGGGACATAGTGCTATTGTGGAA TATCTTGTAAACAATGGGGCAGAAATAAACCATGAGGACTTTGATGGTCGTACTGCATTGTCTGTTGCTG CAATGTCCATAGCTGTTAATCAGGGACATACTGATGTTGTTACACTTCTGATTGAGAAAGGTGCTGCTGT TGATCATAGGGACCATGAGGGAATGTCACCACTGTTGGTTGCTGCCTACGAAGGCCACCAAACTGTCGTT GAACTGCTGTTAGAAGGTGGAGCTGATGTTGATCATACTGACAACAACAACAGGACAGCATTGATTGTAG CTGCTTCTATGGGACACCCCACAATTGTTAGGACACTTCTCTATTGGGGTGCAGCTGTGGATACAATCGA TGGAGAAGGAAGGACGGTATTATCAATTGCCGCATCTCAAGGTAATTGTGAGATTGTCCGCATGTTGCTA GAGAGGGGATTAGATGAGATGCACAAAGATAACCATGGATGGACACCATTACATATGTGTGCTTATGAGG GTCACCAAGATGTCTGCCTTGCAATCCTTGAGCAGGGTCCTCATGTCACTGTGGACATTGCTGATCGGGA TGGACGTACCCCTCTTGTACTTGCTGCTCAAGAGGGGCATATGGAAGGTGTGAAGGTATTGCTGGTGCAT GGTGCCAACGTTAGTCATTGCTCCCATGATGGTCGTACAGCTCTTAGGGCAGCTGCATCAGAGGGACATC AGGGACTTGTGTGCTTATTCTTGGAGCATGGCGCAGACATCAATTACAGAGATGCTGAAGGAAGATCAAC TATGTATATGCTTGCCTTGGAGAACAAACTCCCTATGGCTCAGTTCTTTTTGGCAAATGGTGCCGATACC GAACTTTGCGACACAGAAGGTAGAACTGCTCTACATGTAGCATCATGGCAAGGCCACTCTGATATGGTCT CTCTCATCCTCCAAAGTAATGCGAATCCCAATGCAGTTGATAAGGAACGCAGGTCTGTGCTGCAGTCAGC AGCATGGCAAGGCCATGTCTCTGTGGCAAAGGTATTATTGGAAAGAGGAGCTGATATAAACCACACATGT AATCAAGGTGCATCTGCACTTTGTATTGCTGCACAAGAAGGCCATGTCGATGTTGTCAAAGCCCTTCTCC AGTATGGCGCTAATCCAAATCATGCTGATGAGCACGGACGTACACCAATGAAAGTTGCCTTGAAGGGTGG CCACGAGGAAGTCAGCAAGTTATTGGAAGATTATGGTGTTCAAAATCCCTTGTCACCTCCATCAAGCAGA GCATCTTCAAAGAGAAGTGGTAGTTCTTTGTCATCAAGCAACAGTGACAATAAGCCATCAGTGTTAACTA ATGGTGCCTTACTCCAAGGTAGTTCTCCCTCAAACTCTCCGGACTCTACCTATGACAAGAGGAAATCTTG CACTTCAAATCCTTCAACAAAGTCGTCATCAAATCTAACAAACTCTACCAACAACTCATGCTTGCATCTA AGTGCAATGAGGGAAAATCGAACAACAACGTCTTTCACAGAGCAGCTACAACAACATATGGTGTCTCACA AGAGAGCCCCTTCCCCACGAACATGCTCTCCAGACCCCAATCTGATGAGAAATGGCACTCCAACAAAAAT TACACCAACAAGTTCTTTTCAGACAATACCTGAAAACATCACTACAGCTCATAGTTCAGAGCAGCTGCAA GGAACCCCAAAACATGGTAGTAGAAGACATCAATCTGGACCATCCAGTGCTGCATCCCGTAGAACACAAT CACCTGCTCATACGTCTCGTTCATCATCTCCTTCAATGCATCAACAGCGGGAACAGCTATCAGCAACCCC GAGTGAAGGATCCTCCCAACCATCTCCACGGCACTCCCCTAGACGCCAGAGCTCTTCAAGCGCCCCAAGC TCCCCAACTAATTCTGATGAGCGGAAGCCACCACCAACACCTCAGAGAGTGCGGAAGTCTTCAAATCCCC TTCCGAATGGATCCTCACAGCATGTGATGGTACACAATGTGAAGTCTGCTTCACCATCACCAACAAGACG TGCTGTACCCCGGACAAGCAGTCAGCAGATGCCTCCGAAGATGGGCAATGGGCACTATCAAAATCACCAA GATGTTCCATCTCCTTGGCATAAACAGCAGAGTCACATGCACCTGATCCAACAGCACCAAGAATGCCAGC AATCTCTGTACAGGGCCAGCTCCCTTGGAAGCATCAACAGCCAGGAATTGAACACTTCCTTCCAGAACCC TTCCAACGGTTCTCATTACCCTCCTCAGGATTACTCCCCACGCCTATCCCGTAAGCAGATGAACGAGAGC AACAGTTCCTGCCATTACTGTGGACAACTCCAACCATCTCCCACACATGGTGCTAAGCACTCATTTCAAC AATCTGTAATCATGCAACAGAATGAAATGAAGATGGGATCATCCCATCAACGCTCAAACTCTCAACCTGT GAACCTGACACCTGATCAGGTCCAGGCCTATACCCGCAAGGCCTCGCTTCCTGGCTCTTTCAACCAGATC AACATCCAACGCTTGATGGGTGCCCAAAACAACCGTGTTCCAGGATCACCTGAACCACGTACCAGACGCA ATGGCATCTGTACCAACCCTAAGTTTCAACGAAAGGCAAACTTACCCCAAGGAAATACTGGATTAAACAC TAGCCAAGGAATGCTTAACCAATCTGGGATTATTACAAATGGAAATGGATTATCAGCTCTGGAGATTAAG CAAGCTGCTAAGATTGGATTTGAAGGGCCTTCCAGGAATGGCTACAAGAAGGAGACACCCTTATAATGGT GAGTTAGTTTGTTATTTTTTGTTATTTTCTGCATATTTCCCTCATTAACAAAATTGGTGTCCAAAATGCA GACATAGATTTATGTCCACCAAACCAACAACATCTCCCTGAACCAGTGTTATCTGTTGGTAAATACATTT TTAACCTAGTTTAATTGTTGGTATATGTATTGCCTGAATCAGAATTGTTCCTCTCAGATTGTCCTGACCC AATTTGACCTACAGAGCATTAAATGAAACTCAATAGTCAGAGATTTTCACTGACAATGAAAGCAACTGAA ATCCTTGCATCTAATTGGTTTAGTACAAAGTATTCAGTGAAAATCACTGGCAAGATGCCCCAACACGAAA CGAAACGCTCCCCTCCACAACTAATGGTCCCATGACCAGCTGCATGGTGGTAACAAGGACCTTGACTCCT TTGTAATCCCTCAAGAACGCCCTGTCTGCTCTTTGAGATCAGTTACATCTTATAAGGTCAAGTTATTGGT CACGTTTATGTCCTTACCACCTGTATAAGGCTGCTGCTGACCTGATAGGGTGTGGTATGCCCATCTGCCA CAACCAATCATACTGCTGTAGTCCATTCAGACTAAAGGAAATGTAGTGGAAACTGTTTGAGCCAAAAGAC CATCAAACTGAGTAACATTGTATACAGAAGGAAGTTACCAGAAATCTATTAGGAAACATTGTTCATACAT GTATGTGATAAGTTTCTTTATTGCAAAATTGGTTTGCTTGTTGGCTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds