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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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L. variegatus
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>GAUR01078607.1 TSA: Lytechinus variegatus AMR9006.39519.2.8 transcribed RNA sequence AGGCCACCGCACACCTTACAACTGTTTGCGATCTGATTATGGAACAAATCACATTCTGAAAATGTGATGA AACATATTATTTTATTTGAGGTTAAAATTAATAGAAATAATATTATGGCAATTTTGAAAGATTGCAAGTC CTTATTTTGGAGTAAAGTCCAAATTAGTTTCAAATCGTAGCCCATCGTACGAATGCTATGACGTCATTAT GACTAGATATTACATTCGCTTTTATTCTGAGAAGGATGATATCATAGTCATAGATTTGAACATATGTATT CGTACGATGATTTCGAGCATTACACAGTGAGATATTCCAAGTCTCAATATTAGCATCAAATTCTACTACA TTTTATTCTGAAATCGGGTCGCAGACCAATCGTAAGGTGTGCGGTCGCCTTAATTCACACAGATTTCACA CAAATAATTCATCCAATTTGGATATATCTATGGAAAGAAGATATTACATTTGATCTAAATTCATCATTAA TACAATTAGTGTTATACCCTCTCTTGACAGAGATATTTGAGTACTTCTGTGATTACACACAATATCTTCA GAACCCCATATTCCAACAATGCAATTTGGTCTAAAAAGTAACAAAAAAAGACAAAAACCATGAAAAACTA TGTTGACTTTGGTAAAGCCTGTGGGAGGTCCTTGAAAGGCATTGCCTTCCAAAGCATCAAGGGTCAAGCA CAATGGAAATTCATGTTTTTTATCAAATAAGTACATCAATTCCTTTTTTAAGAAAAAAAAGATGAAATGA TTCAAAATTAGATAAAATGATAAAAACATCTAAAATTCATTTTGGTAATCCCCCTTCCCCCTAAAAATTA AAAATGTCAGAAATACTTTTCGGTGTCAAGTGGTACAATACTTAGACATTAAAAAAATCAATCAAATCAA TATTTTGATACTGATTAGTCCCATTTTTTCCTAGATAGATAAAAGTTAAATTGTAGAGTTATGCACATGA CATGTATTGGCCTGATAAAAGGATGCATTATATTGTATGTGGGTATTTCTTATTCTAATCAAATGATGGA CCAATATTTTCCCCCTAGTGGATTATAAGACAATGCTTGCAAACTAAAAACACTTTACAGAGTGTATGCA TTAGGATGGATCAGAAGAGTTCAAATAGAGTCAATTCTCATATCTTTTGCCTTCCCTAATGAAATGAATC AAGAATAATGTTTAGCCTTCATAGCTTTTCTTCCCCGACATGCAATGAAGGTCAATTTGACACATTTAAA TTAAGTTAAACAATACATATCTTTATTTTGTCAGGATAAATACTATGCCAATTGCCAAGTTCCAATACTA CACTAAATTTCATTCATTATGGAAGCCGGTAGTATAAAATTAGAATATTTCCAACATATTGTGTAACCAT TACCATAGATTACGGATCACACGTGTACATGCAGTATGCTATTTTTTCTGAAGTTTCATCCACACATTAC CACTGATGCCATGAATATAGTTCACACGATGGAACATCAAATTTGAGAATATGCAGCATAAATGTGATGA AAAAAGCCACGATAGATCCAAGAATTCATTACAAACTATGAGAACAGAGACCCTAAACCATAATGAAAAG CTTATGCCATTTAGCATGGCATCAAGGTTAAGGACCATATGACAGGACATTAACCTGTAAGTCAATCATC GACATCACATCCACTACCCAAAATATCCCTGATTTACATATCTGTCCAATAATAATATTATTAATTTCTA CTGTGTTGCACTCAACATACGTAAGAATATACGCGAGGTGAATGGGAACCCGGATAGAATCTATTACTTG AGACGCAGAGTATATAAAAGCTGTTCTGCTACAGCCTGGGTAATTATGCAACACTATAACAGACTGCTTT TAACAGTTATAAAATAAGAGGTTACATCTAAGAAGGTTACTAGAAATGAAAGTCCCTCAAGAGAATATAG AGGAAGTGTTGTACCCCATTCAATAATAAAGGTATGAATTTAGCTACCTACATGTCATATGCAGTTTTAC AACAAGTTCTAAAATTCAGTCTGCTCTTTGCCTTTTTCTCATCTTAAAAATCATGAAGGCCTTGTTCAAA TTCTCAGAAATTGTTCCATAGATTCAGGATCAAAGAAAGGAAAATGCCATGTAATTTGATTAATTGGAAA TGATTATTCAGAATGGATTGGGCTATATAATGGACATAGAGGCAACATAAACCATCTTATTTAACCCAGA ATCCTTTCGAAATTATAACTGCTCTACTGCTTCAACCACTGATTGATGCCTTTAGGGATACTTGCGAAAG TGAATCCACTGTTAGTTGGAAGGGCGAATCCTCCAGTGGTTTGTTTGATGAGCCACTTTTCCTGTAAGCC ATCTTGGTTGGTGTCCATCTTGGATTCTTGTGGCAAGTTTTCATTCTTTCCCTTCAGAAGCCAGGATGTG GAATCATGCGTGGGTACCTTCAGAGCAGGGCCATCAGAGGCAGGTGACCTCGGAAGCAACCATTCGGTCT TCAAAGGGGCATCCTCACAGATCTCTTTGTTGTCGACAACCATCGGCTCTGTTGGAGCTTCGGTTTTCTT GAAGAGCCACTGGCTGATAGAGGTTTGGTCTGACTTCTTTTGGGCAAAATCCCCTTTCTTCAACCAAGCC GGTTTCTCCTCAAGTTGCCACTTCAGGAAGGATGAAATTATCACCGACTCGTAGCCTTCTTCGGGGGCGG TCTTTTTGGCGAGCCATTCTTTGACAAAGTCCTCCTTGGGTAACTCTTCCTCTGGTCTTGCATCCTTGGC CTCCTGAGCTCGATTCTCCTCTCCAGCTTGTCCCTTAGAGAGCCATCGATTCTTGGAAGATTCTGGCAAG CCATCAAAGCCACCCTTTGCAGTATCAGCACAGTTCTCATCGCAGAGGCACTCGTCAAACGTCTTGCACT TCTCGTTACCTTTGCAGACGTCATCAATGTTGACATCAGTGGTCGTGGCCTGGACTGGTTTGGATGAGCA GCATGTGTTCTTCTGGTTGCGCTGGGTACGTTGTCTAGGTCTTGTCTTGGGGCCACATGGACTCGGAGCA CCAGATGGAGTGTCCTGTACACAGGCCATCTCTGCCAGATCCTCTATTTCAATGGGCTTCACTGGTACTT GACTTGGGTGACATGTCTCCTTCTTCAACCAACCCTTAGTTCCTCCTGATGGGCTATAGTAGGCAGGCTT GTTAAGTTGCTGGCAGCTTGCTCCACTGCCATCAGTCTTTGGGGTTCGGCGAATCCACTGGATGTTTGGT GAGTTTAGGATGCTAGCAAACTGAGACAAGATGGTACTACGTGAGCTCTGTTCATGCTCCTTGGGGATCA TGACGAAGGAATCTTGATCGTCGTCACTCTTCTCACTCTGGCATGTCTCCATCACTGGAATGTCATGGTC CTTGGCCAACCAGCCTTCTGCATCCTGGTTCTCTTGGAAGATGGGAAAGACTGTGTGTGTAGTACCATTC TTGATCCCACTGCTACCGTTTGGTGTCAACCAAACCTTGTCACATGCATACTTCTCAAATGGTGCCATAA TCTGTCTTGGTTCGCCTTGTACATCATCTTTGGAAGGGCAAAAGCGCTTTGGGTTGATGCTTCCATAGGT CAATATACATTTCTTGAGGCGTTTGGGATCACTCACAAACTCTAGAATTCCATTTTCCTCCGGTTCAAGG TGAAATTCTTGGAATCTCTTCATGATGTCTTCAATGTCCTGCAAGTCAACAGCTTTTTTGGCAGACCTGG TGTGTTCCTGCAGGGCCTGGAGAGCTCCAAGTTCCTTCTTCAAGCTATCGGCTTGGAGATGAAGGTGTTC TTGCTTGACCTGTAGCAGTGTGTCCACCTGATTTACAAGGTAAACCTCTCTGGTCCGCAGGTTCTCTAAC TGACGACTGAAGTTGGCTTGGATCTTGTTCTTGGACTCTGTGGCATTTTTCTGCAGTTCAGTTTGAATAT CAGTGAGCTCTGACAGGGCAGCACGGATGTGGGCCAACCTCAGCTCCAGGTTGTGAAGAACCGTCTTCTG ATGCGACATGTCCATACCGTGATGCTGGGATGGAGTTTGCATGAAGCAGATTGCTTTAAACTGGAATGAA GGCTGGTGGTCGATGGTCGATTCACTTCAACATAAAATCCAAATTTCCAGTCCGCATCACATCCACCCAG CAACTCACTTTTCGCCCGGCGCCCATCAGCGTGTACGCA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
