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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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L. variegatus
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030979299.1 PREDICTED: Strongylocentrotus purpuratus nuclear receptor coactivator 4 (LOC585371), mRNA ATCGTATTATCACGAAAGGAAATTCACCTGCACTGCACTGCGCATGCGTCGACGTAACTGGTACCGGTAC GGATGTGGGGCTGAAATACTGGACGTGCGTGGACTCGACTCGTAACTGGAAGTTACCGTTGCATCCATCA TCGGCCTGCGTTCCAGTTTGAGGGATTCTGCTGCAACCTTGGTCTCAGCATCACGGCATGGACTTCTCTC ATCAGAAGACAGTTCTACACAACGTGGAGCTGAGGTTGGCCCGCATCCGTGCAGCCCTGTCGGAACTCAC TGATATTCAGACGGAGCTGCAGAAAAATGCCACTGAGTCCAAGCACGACATCCAGGCCAACTTCAGTCGC CAGCTAGAGAGCCTACGCACCCGAGAGGTTTACCTGCTCAATCAGGTGGACACACTGCTTCAGGTCAAGC AAGAGCACCTTCATCTTCAGGCAGACAGCTTGAAGAAGGAACTCGGAGCTCTCCAGGCACTGCAGGAGCA CGCTAGGTCAGCCAGGAAAACCGTTGACTTGCAAGACATCGAAGACATCATGAAGAGATTCCAACAATTC CAACTTGAGCCCGAAGAAAGTGGATCCCTAGAGTTTGTGAGTGATCCCAAACGCCTCAAGCAGTCCATAC TGTCCTATGGAAGCATCAACCCAAAGCGTTTCTGCCCTGCCAAGGAAGATGTACATGTCAAACCTGGACA GATTATGACCACCTTTGAGGAGTTCACTGAGGGTAAGGTTTGGCTGACACCAAAGGCTAGCTGTGGGACT AAAGATGATACTCCACGCACAGTCTTTCCCATCTTCCAGGAGAAGCTGGATGCAGCAGGCTGGCTGTCCA AAGAACAAGACCTTCCAGCCATGGAGACGTGCCAGAGTGAAAAGAGCGATGATGATGACCAAGACTCCTT CATCATGGTTCCTCAAGAATCTGACCAGAGCCCACGTGCCATCTTGTCCCACTTTGCCAGTATCATCAAC TCACCGGACGTCCAGTGGATCCGCAGCACCTCCAAGACCGACAGCGTTGGAGTGAGCCGCCACCAGCAGA CCAAGCCTGCCTTCTACAGCCCATCAGGAACCAAGGGTTGGTTGAAGAAGGATCAAGCCCAAACTACCTG CCATCCTAGTCAGGTACCAGCCAAGCCCATTGAAATAGAGGATCTGGCAGAGATGTCTTGTGTTCAAGAA ACACCATCTGGAGCTCCAGGTCCCTGTGGCCCCAAGACAAGCCCTAGACCACGTACCCAGCGCAACCAGA AGAACACATGCTGTTCCTCCAAACAGACCCCAGCCAAGACCACTGATGTCAACATTGATGAGGTGTGCAA GGGAAATGAAAAGTGCAAGACCTTTGACGAGTGTCTCTGCGATGACAACTGTGCAGACACCGCTAGGGGT GGCTTCAAGGGCGTGCCAGAGTCTTCCAAGAACCAATGGCTCGCCAAGAAGCCAGCCGGAGAGGAGAACA TAGCCGTGGAGTCGAAGGATGTCCAACAAACCAGACCAGAAGAAGAGTTACCCAAAGAAGACTTTGTCAA AGAATGGCTCGCCTCAAAGACCACTCCTCAACAAGACTACGAGTCAGTGATGCTCGCAGCCTTCCTGAAA TGGCAGCTAGAGGAGAAACCAGCTTGGTTGAAGAAGGATTCTGCCCAACAGAAGTCAGACCAAACCTCTG TCAGCCAGTGGCTCTTCAAGAAAGCAGAAGGTCAAGCTGAGCCGATGGTTGTCGACAACAAGAATAGCTC TGAGGATGCGCCCATGAAGTCTGAGTGGTTGCTCCCAAGGTTATCTGGTTTCGCCACTACTGCTTTCAAG GTACCCACACACGATTCCACTTCCTGGCTCTTCAAGGGAAAGGATGATAGTGTGCCTCAAGAATCCAAGA TGGAGACCAAGGAAGATGACCTGCAGGAGAAGTGGCTCATTAAACAAACCTCCGGAGGATCTGCTCTTCC ACCCAAAGCAGGTGGATTCCCTTTCTTCAATATCCCCACAGGTATCAACCAGTGGCTGAAGCAGTAGAAC AAGAAAGAAATTTTATCCGAGTACTGGGGTAGATGCATCAGCTATGTCCCGTACATAAATTCATTATACC CTTATCCATTTTGAACAGCTATTTTCAATGTAATAGTCCATGGCATTGAAATTGTCCATGTATGACAACC CCTCCACCACCCTTGTTATTTCATAGATAAACATATGTGATATTGTTAGAAAAGGGCAAAAATAAGATTG AATTTGAGTGCTTATTGGCCTAATGTTATAGCTATATTGTTTGCTTGCATAGAACGCTGCATCCATATTG CACTATGGGACCATCGTTCCTTATAATCCTCTTAGTTGTAATGTCACCCACTGTATAATTGTCCTGTTTA CTACCCTGTATCACTTTGTAGTTTTCATTGTATTGGGCTTAACTGCACTGAAAAGATATGGGAGAACACC ACATACTACTGGAAAATCTGAAACATTTGGGACATTTTAACTTTTGCAAATTGTTACGGACCGCCATTTC AACAGCAAACAAAATCTGCAGAACTGACCCTCTTGTGAAGTTCATGAGCGTTTCATACTCACTTGGCGTC CTGGAAGAAGGCTGTTACTGCCATTGAATGACAATACATCTTACAGCCTTCTTGCGTGGAGTTGGTATGA CATGATCTCAGCTTTAGTTATTATGACCACTGGGGAAAGCAAGTAAACAACCAAGGGGACTTATAGCCTG ACGTCCTATCCAAGGGACCTTGTCATCAAAGATTGATGCCTTGCCAGGTTTTTCAGTCTGGTTTTGAGCA CAGGGCTTCACATTTACAAGACCACTGTTCTACCACTTAGCTATCATGCCATTTTTCATTACATTTATGC TGCATGCTTACTCGGTTTGTAAAGATTTGTAACAGCCATGTCAATGCTATTAGTGGTTATTTACATGAAT AGTTATTCTCGAAGTGACACCTGCGTTACCTATCACTGAAATACTCTTCATTGAAAATTTACCTTATTTT TAAATTGAAGAAGAAGAAAGAGGATGGAAATCACAATCTGTCAGTTTTATAAGTGATTTATAGAATTCAA AACACATGATGTATGCTGTCAAGAAGTGACTTTTTATTGTGATTTGTAGAATTATAGTTTTTTGAGGCCG CAGTAAATTTTCAGATTTCTGTCTGATCATTTTATTGCCGTGTTCATTTTTTAAAGTTAATTTATCGATA TAACCTTTTAACAAAGTAACATAACAACGTTTACTTTGTATCGAAACTATCGATGCTAAAAATAAGATAC TAATAGATTTGACAAATTTTATATTGAGGAGAAATGTTAATGATGTATTTAACTACAATAATGAATTCTA ATCTATTCTGATTTCCGTAGAATAGTTAAAATGAATTAATATGTTGGCAGTTTGTGTTAATTGTGATTGT GTGTCATCTCATATTTGAGCTATGAAATGAAATGGTGTAAGACCCATGTGTGATCAATGTTTTTGTTGGT GTTTATTTAAAGCCAGAATATTTTTATCTTCTGATCAAAGCATATTGCAGGTACTGGTACTTCATGTGCC CTCAGAATAAAAAAAAATTAAAAAAAGATATGTATATCATAAATATTTTTAGTGTCACAATTATGACAAG ATGCTGTGCATTTGTCATAAACATCTAGATATTTTAATTGATTTGGTAAGAATTGTCAAATATTAGATTC ATTTTCCATTGCTATTGTATCCTAGGTCCATGGTTTTTCATTAAGTTTATCACAACACGGAAAATAGTCA GTAATCCTTCATATATCACCATTCCTATGTTATTGCATCATCATCTTCGTAATAACCCAGCAAAAATATC TATTTTGCCGAAGAAGTCAAGCTAGATACAATTACACCTTATTGGGCTTTGCTTTTTTGTCATTAATTTC AAGCTTTATCTTATTAAAGTGCTCTTTATCTTTATATTTTCAATTTTTGTTTGGTATGAAGTGATTTCAT TGGTCATAACAACATTTTTTTTAACAAACGTTTATTTCTTTTTCAGTAATATATTTGGAACACTTTACCT TTATTGATAGAGAGCTTCTTTGGTTCTGTAACCTCGAAAGAATGCAATAATATATATTATTTTAAAAAAT AGACCATAGTCATATGTAGCTTAAACTCTAGTATAAATGTTATCATTGAGCTGCAAAACTTTAAAAAACA AAATTGAAGTGCGAATAAAGGTGTTTCATTTCATACCAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
