Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAWB01048772.1 TSA: Patiria miniata AMR9002.37226.0.2 transcribed RNA sequence AAAGATCAAGAGGACGAGCGACTCAAAATCATGGACGACGGTGGGAACTCTGGAAACTGCAGCGGACTTG AAGAGTTTCTGTACCCGACAAACCCCGACGTTCCCGACTATGGCTTTGATCTGTACGAGCGTGTCGCCAA GCTGGAGGGACAGGTTAAAGATCAAGAGGACGAGATTACGTGTCTCAAGGCAGCCCTCGCCGACGTCGTT AGAAGATTAGCTACGTTAGAATCTTGTAAAAATTCACAGAGAGGGTTTTTAAGCCACTCTCCCTTGCCAT CTAGACCTCCCATGTACAATGATGTCACCAAGTCCAGAACCAAAATCTTACTCTCGCCGGCGACGCCCGA GTCCCAAAGGCGGGGCAGAACAGGGTCCTTCGGGAGCAATTCCTCGGGTAGCGACGGGAAACTCCGCAAA TGGGGCTCCCAGGACAGCTATAGCTTCCCAACTTCCGGTTCACCTAGAAAAAGTGCCTCAATGACAAACA TCCACAAAGCAGGGGAAATTAATGGGGCACGTCCACGGCCGAGCAAGGAGGCACTATACAATCCAGATGA AGGATGGGTGCGCATTTACATGAGGGGGCGCCCGATCACCATGTTCATGCCCACGGAAGCGGGAGACTTC TCCGTCAAGGCAAAGCAAGAGCCCCCAGCTGAAAAGCTCAAGCTGGAATGGGTTTACGGTTACAGAGGGA AAGACTGCCGCACCAACCTGCACATATTGCCAACAGGTGATATCGTCTACTTCATGGCAGCCGTGGTCAT CCTGCACAACGTGCAAGAGAACACCCAGAGACACTACATGGGCCACAATGACGACGTCAAGTGTATTGCC ATTCATCCAAACACTGTGACCATAGCATCTGGACAGGTTGCTGGCCATGATAAGGACGAAGGCAAACCTC ATGTGCGTATCTGGGACTCCGTCAACCTGAACACGTTGCATGTCCTGGGACTTGGATTCTTTGACAGAGC TGTGTGCTGCGTAGGATTCTCCAAATGTGACAAAGGCGTCCAGCTGCTGGCTATTGATGACTCTAATGAC CATGTCTTGTCAGTCTGGAACTGGGAAAAGGAGAAGAAACTGGCTGATTGCAAGTCTTCAGGGGACCCGG TTGTGGCAGCTGAGTTCCACCCCCTGATAGAAAATCAAATGGTTAGCTGTGGTAAGGGCCATTTACTCTT CTGGACGCTAGATAACAACAAGGTGGTCAAGAAAGCTGGCATCTTTGAGAAACATGACAAGCCCAAGTTT GTGTTGTGCTTTACATTTGCTGGCAATGGCGATCTGCTCACCGGTGATTCCAACGGCAACATCTTCATTT GGGCCAAAGGCAGTAACCGCATCAGCCAGGCCATCAAGGCTCACGAGGGGCAAATCTTCTCCCTTGTCAT GCTTCAGGATGGAAGGTTCCTGTCTGGTGGGGGTAAGGACAGGAAAGTCCACATCTTTGATACTTCCTAC GATGTGACTGTCACGCTAGTGTTGCCCGAGTCGACTGGCCCGTGTCGCTGTCTGTGCCCAGGTAAAGACA AGGACATCTATGTAGGGACAACCCGTAATGCCATTCTGCACGGAGACATGGAGGGCGAAACCTTCACCCC TGACGTTGTGGCCCATACCGATGAGTGTTGGGGTCTGGCCGTGCACCCCAATCAGAGCTTGTTCCTGACT TGTGCCTATGACAAGCACGTTATCATGTGGGATGCAGAGCAGCATCGCCCACTCTGGATGAAGACCATGG AAGAGGATCCCTGCCAGTCGGCCTGCTTCCATCCCAACGGTGGAGTGGTCGCCCTTGGTATGAAGACAGG ACGTTGGATGGTGCTAGATGCCCAGAACCAGGATCTGGTGACCGTCCACACTGATGGTAACGAGCAGCAT GACATCGTCAGGTACTCACCAGATGGGAACTATCTGGCAGTTGCCTCCCATGACAACTACATCTACATCT ACGCAGTGACTGAGGAAGGACGCAAGTACAGCAAAGTTGGCAGATGCTCAGGTCACTCCAGCTTTGTAAC CCACATAGACTGGTCAGCCGACTCCAACTACCTGGTCTCCAACTCGGGCGATTATGAGATCCTGTACTGG AAGGCTGAGAACTGCCGTCAGATCCCCTCAGCTACCAGCATGCGGGACACCGAGTGGGCTACCTTCACCT GTGTCTTTGGTTTCCCTGTCTGTGGTATTTGGCAGGAGGGCAGTGATGGGACTGACATCAATTCTGCCTG TCGCTCTCATTCCGGTGCAATCCTAGCTACGGGTGATGACTTTGGCAAGATTAACCTCTTCAGCTACCCG GTCACCCAGCCCAAGGCTGGTCACAATAGTAACCGCGGTCACAGCAGCCACGTCACAGCAGTGGAATTCT CCAGTGACGACACACGTCTCTTCTCGACTGGTGGCCGTGACATGTCCTGCATGCAGTGGAAAGTGGTGTA AACTCAGCACAATCAATTTTGTTTTTCTTCCACGGAACTTTTCTCACCAAGTGGTTTAAGCACAGATAGC TTTTTCAATGTTCCAGGTTGTTTCTATAAAGTAAACAATTCTTCAGACCTGTATCATGTCTTGTGATTTC TTTCTATAAATGGACGTCTACAAGTTTACATGTGTATTCATAAAAAATATTGAAAAAAAAACCAAGTTTA GCATTTTGTGGCTCCTAATCATCCTTCGAAATGTCTTTTTTTTTTTACGTAAATGACTGTAAAATAGGCT GTTGGATAGACTCGTGTTTAGACTATACATCCTTATGTATGAGCAAGTTCAGGGAGGACCATTAGTCAAC TAGTGGTTGCTCTGTGACGTAACGTAGCTATACCTGCGCTCTTTAAGCATTGTGCGACAACCTGCAGTCA AATGATGGTCAAAATTTCATATCGAAAATCCTTATTAGTTGTGGTTCCCCCTGCATTGTGATGCGCATGG TTATTGGTAACTAGAGATAGAACCGTGCCCTGTGGTCCGGTTCCAAATAGTCAACTAGTGTAATCCAACC ACATCCTGCGTTCAAACTATGTCAAACTATGGTTAACTATAATTTGCAACCGAACTTGTTCTTAGCTGTC CGATCAGGTTACAATGAAAGAAACTTTCCCTTGTGAAATTAATCAGCATTTCAGACTTAGGTTGTTAGGA AATCCTGTCTTCAAGCCGGTAGGGGGAATTTTGAAGTGACCCCGTTTCCCGGGTATCTGCTTTGTATTGA ACAATTTTTGCACAATTCTGGGTATTCCCCTTTATTAAATGTACAATTAGGATGGAATAATGTGACTTCA GACCTAATTCACCTAGCTGCTTGATTATCAAGAATGATGTTTGGAACAAAAGAGATTTCATGTACGTGAC CAGTTTCCTAAGGATTTTTTACAATTTAAAAAAAAAAATCCCTTTGAAATCTGGAATTTTGAGAATTTTC CATAAAGGTCTCAATCTTTAAAGGTTTACATAGAATGGTTTACATACAAACGAAATGGGTATTTTGAGGA GTGTGTTTTAGGCAAATACAAACATATATCTTCATTTACCCTATGTTGTTTTGGGCCCTTGGCAGCCCCC AAATGCGATTATTTCGTGGGTTTTTCATTTTCCCCCAAATCTCACCCCTGAAGTGTCACATTGGACCTTT TTTTTTAGACAGGTTGACAGATTTTCACTGAACTGGTAGAGTTCACCTGTCTTAAGCTTTATCTTGTGAT GCTGTGTCATATGAAGCAGTAATGTCCAAAGAAATACCCAAAAACTGTTATGTTTTGACATTTATTGCTC ATATGTTGGCAGCTCAAGGCAATCAGAAGTTGTTTTTTTAATGGCAATTAGTCAAAAAATTCAAAAAATT GATTATGAATAATGCTTTTAAAGATGGATCACTAACGTATTTTATTTTTTGTTTACTGGATAGACAGCGT TTTCTTTGATTTCATCACATGTTGTTAAAACACCATAAGGAAGTTATTTATTTAAAAACTTCTTTCATTT TGTACCTTTTTTTTACCAGTTTCTTCAAAGCTGTTTAGCAAGTTTACGCTCATGTTTACTACAACGAATT CTAAGCCACGAGCGGATCAATTTTTTACATTCGTCTCTTGGTCTTTGCAATTTTTTTTGGAGCAGATGCA TTCAGTGGTGGTGGTGGTTAGTACAAGTCAAATTCAGTGTGATAGCATTTAAGGTCTTTTGATTGAAAGC AAACGACAATTTACAGAGGTGGCATATCGTGAAATATCACCAGGGAAACCTGTCAATAAACTAAAAATAG AAATATTCAACAAAATAAAAAAAAAAAAAAACTTAAAGTTTAATGAGTTTAAAGAAATACTGGATTCATA TGAACCGGCCATTATTTAATTTTTTTGCGATGTCAAATCTTGGTTATTAAAAAGGGATGTAGAATTTGTA GGCATCTTAATGCACATTTATCAGCAAAAATTATTGGTCTTTCAACTGACTTTTCTGTTGAGAGATGCAG AGAGGTTGCAGTTTGGATACGAAGGCAGCTTAAGTAGTGTGTAGGCATCGCCGGGAAATCCCCAGCAATT TTAGTAATTAAAGTCTCTTATGCCAGATCTGCTAGAAACAACACAAATGCAGTTGGTTAGGTTACAAGGA AGAAAACTTGCAAAGGACATTTAAAGATATTTCTTTTATGATTTCAACCTTTTTTTTTTACATTGTGATT GACACTGGTGCCATTGTGAAAGTTGTTGATATTTGAATGTGCACTGGTATTTGGGAAGGCACTGGCCTAA CACTTTTTGTTGTGGGTTAAGAATGGTTTGCAGTTTGGAATAATTTAATTGATTTTTGGATCTTTTTTTA ATTTTTGATTTGATTTAGTACCTAAGTTCATCATTCAATTACTTTTTTCTGTTCAAATTTTGTGACTTGA AAATGAAATTTCACATTTTCTGTTAATGTGAACTTGAACAAAATCAAATTCTACATAGAATCCTCCCTTT TTTTTGTTGTTTCAAATTCGATGTGGAAAAAACTGAATGGGAAGAGAACATGGAGGCTACAAGTAGTGTT AATGTAAGTTGATTTTGTTCCAGAGAGTGTCCTTTACTGTTCACACAAATAGTGGAGAATCTGCCTAAAA AGGCACATGAAGACTCAGCCATGGTTGCCATTGATTTATAACAGCATCTTTAGCAGATTAGTACGTGGTC ATTGCAATTGACTGCATTCTATTTTGCGTAGTTATGAGGAGCAATTTTTTGAGGTACAGTAAAGTAATCT TGAAAGCTGCTGGTGTAATTGTTTGTGTTCCCTTCTTTTCTCAGAAAAGACATTCTGTTTGATTTACCAT GCCTTTAAAAGGACATTTGATTTATCTTGTAAGGTCATTGGTGGCCATCTTTGTATGGTTCCAAAGGTCA AGGCAGACCAAGGCTTAGATCACCATATATTTGACAATGGCACCAGACTAATTAGGAAGTGTAGTTGAAT GTAGAATCTTCAGAAGAAAAAAAATAGCAAGTTGAGGTAAACCTGCTCATTTATCTGTGGTTTACTTTCA ACTGTAGTGTGAGACTAGGGCCTAAATTTGGTTTTGTGTTGGTGATTTTGGCAAATGGTGAGCTGCGATC AAGTTACTACCTTTTTGGTAAAACAAATCTTTGTCGAATGAATATGTAAAGCCATAAGACAAAAACATAC AAGACCCGGCCCGGAGATGATGAATAGATGTAAGAAGTAAGTAGTTGACACAATGTGACGTAAGCGTATA CTGTAAGATAATGACATATTGTTACACATTTAAGCTGTATTTTTCATGTGGAGTACCACTGTGGATCTGT ATTTCTCTATGGTCAAAATAAAATACATAATACAATGACCAATTCCTGGCTCCACTTTCTGTATTGAAGA CACATAGGATGATTTGCATTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds