Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_031000179.1 PREDICTED: Strongylocentrotus purpuratus unconventional myosin-Ia (LOC594811), transcript variant X2, mRNA GTTTATAAGTGGCGGGTGTCTCAGCAAGGGGCTGTATGTTGCCCTATTCAGTCTGTGGATTACAAGGGAA GCTTATCCCTGTTCAAGCGACAGTTATAAGTAGATTATTATTGATGACATTGACTTTTCTTGGACGATCT ACTTTTTATGGAATCTTTGGAGTGGAAGTCTTGACTCTAATTGACAGCGAACATAACAATAATAATACTG GACAGAACCAACTAGGAAAAACCTAGTGGCAGAAGCTACAACGAACAACCCCCTGAGGATTCCTGGTATA CAGTTCTTGTGGGAGAAACACACACACCAGGATGGCACTTGTCAATGGCACTGTCAACGGCAAGGTGAAC GGGGTGAATGGGATGAACGGTCTTGGAGGACAGACCAGGACTATTCTGGATGACATGGTCGGACTTGGAG ACTGCGTCTTGCTGGAGCCCCTGACAGAAGAGAACTTCATCGAGAACCTCATGTTGAGGTTCAAAGCTAA TGAAGTCTATACATACATTGGCAACGTGGTGGTCTCAGTTAATCCCTACACCAAGCTACCACTCTATACA ATGGAGAAGATTATGGAATACAGAGGCATGAATCTTTATGAACTACCTCCACACATCTATGCTATCACAG ACGATGCCTACAGGGACATGAGAGACAAGAATCGAGACCAGTGTGTCATCATCTCAGGCGAGAGTGGAGC AGGAAAAACAGAGGCCAGCAAAATTGTTATGCAGTATGTAGCAGCAGTGTGTGGTAAAGGAGGAGATGTA GACACGGTCAAAGAACAACTCTTACAAAGCAATCCAGTCCTAGAATCTTTTGGAAATGCAAAGACAAGCA GAAATGACAACTCATCAAGATTTGGAAAGTATATGGACATAGAGTTTGATTTCAAAGGTGATCCGGTTGG AGGTGTTATCACAAATTATTTATTGGAGAAATCTCGAGTGATATCCCAGCCTGAAGGAGAGAGAAACTTT CATATATTCTACCAGCTTTTATCAGGAGCACCAGAGCTTTTGATGCATGAACTGGAATTGAGTCGTAATC CTGAAGACTACCATTACCTCAGCCAAAATGGATCACATGACACCAGTAAAATCAATGATAGAGATAACTT TGCTATTACACAGAAAGCCATGCAGATCATTGGGTTTGCTGACGAGGAGATCTTAGGTGTCTACAAGCTC TTAGCGAGCATCCTCAAACTGGGTAACATCAAGTTCAAGAAGTATGTAACCCACAACGGAACAGAGGGAG TCAAGATCATGAACCAAGAAGAAATGGACAGTGTATGTGACCTGTTCCAGTGTGAACGTCACAGTGTAAT GGGGGCCCTTACCAAGCGGACGATGTATGGGGGCAAAGGTGACAAGGTCACGACCACCCTGAGCGCATCT CAGGCATTCTATGCTAGGGATGCCTTGTGTAAAGCCATCTATGATCGGCTATTCTCATGGATTGTCAGGA CCATTAATGAGAGTATCAGGGTGAGAAAAGGGGCTGCCAAGAAAGTCATGGGCGTACTGGACATCTACGG GTTTGAAATCTTCAAGAAAAACTACTTTGAGCAGTTTATCATCAACTACTGCAATGAGAAGCTTCAGCAG ATCTTCATAGAGCTGACGTTGAGAGAGGAGCAAGAAGAATATATCCAGGAAGGCATCGAATGGACACACG TTGATTACTTTGATAATATCTCTATATGTGATCTCATTGAGAAGAGCAATATTGGTATCCTGGCCATGTT GGATGAAGAGTGTCTAAGACCTGGTACCGTCTCAGATGAAACATTCCTCAACAAGCTCAACACCATCAAG TCCATTGTGAGCCATCCTCACTATGAGAGCAGAGGAAAGCTCAAGTCAGACAAGACCATCGATCATAACA GCTTCAGGTTACAGCACTATGCAGGAGCTGTGACGTATGATGTTGAAGGATTCATCGATCGTAACAATGA CCTCCTGTTCCATGATCTTTCTCAGCTCATGTTCAAATGCAAACATCTGCTCCTATCAGAACTCTTCCCA GAAGGAGATCCCAAGTTCATGTCCAAGAAACGCCCACCAACAGCTGGGAGTCAGTTCAAGTCATCCGTGA GTGAGCTTATGAAGAACCTGGTCTGCAAACATCCCAACTACATCAGATGTATCAAGCCAAATGACTTCAA GAGAAAAATGAGCTTCGACTATGACATCGTTCAACACCAGGTTAGATATCTTGGCTTGCTAGAGAACGTG AGAGTTAGACGAGCAGGATTTGCATTCCGACAACCCTATGAACTGTTCTTGACCCGCTACAAGATGTTGT GCCCTAAGACCTGGCCTAAGTGGGTTGGAGAGCCTAAGGACGGTACTCAAGAACTAGTCAGACATCTTCA TATCATGGATGATGAGATAGCATACGGGAGGAACAAGATCTTCATCAGGAACCCCAGAACATTGTTTGAC ATGGAGGAGAGAAGACATCATCACATGCATCACTTAGCAACCTTAGTACAGACCATGTATCGTGGATGGC ATGCCATGACACACTTCAAGAAGATGAAGAAGGGTGCTATACTCATCGCTTCACAATTCAGGGGCTACCA GGAGAGAACGTTGTACCAGAAGAAGAAGAAAGCTTCTACCACCATTGCAGCTCATTTCCATGGTCATCAA GCAAGAGAGGAGTTCAAGAAGATCAAATACAGGGCAAGATGTGTCTGGGCAGCTAGCATCATTCTCAAGT TCTATGTCGGATGGAAGGTGCGGAAGGAGTTCAGGAAGCACTTCAAAGCCAATGCAGGTCCAAAGGTCAA GGCCTTTATCATGAAATGTATCAATGTGAGGTACCTACAAAGGTTAAAGCAACACCTGCCCTCGATGTCA CCCATGGATGCATCATGGCCGCCATGCTCCCCGCTGCACACCACAGCTCACAAACAACTCCAAGAAATCT TCATCACGTGGAGAGCCAACCAGTTCAGGAAGAAGTTTGATGAAGCTACCAGGATTCGTCTGGGTGAGAA GGTCACAGCTAGTAGCTTGTTCAAGGACAAGAAGGCCCTCTATCCAAAGAGTGTGGCAATTCCATTCAAG GGAGATTATGTGCTACTAAGAAACAATGCCAAATACAAGAAGACCCATGCAGAGACCAGTGATCAGTTCA TTGTTTTTGCTGATATCGTCAAAAAGATCAACAGAAACAATGGCAAGGTCACTGATCAGCTTGTTGTCTT GACAACTGCATCCTTCATGGTGATGGATCAGAAGACATTAGCTCAGAAGAACAGAGTTCCTCTAGCTGCT ATCTCGGGCATGTCTGTAACACCATACAGTGACAATGTCCTCGTCATTCATGTCACAAAGGGTGAAGACA ACACTAAGAAAGGTGACTATGCGTTCCTGTGTGATAAACTGATTGAGATGGTAACTAAGTTCCATCGTAT CATCAGAACAGCTACCAACAAAGATGTCTCTGTCACAGTAGCTGACAGGTTCCCAATGAACTTCAATGGA TCAAGAATCGAAGCCGTCGTCAGTACGCAAGACCCTAAGGTCTCCAACCCAACACCCCTCATTAAACGTA AAGGCACAAGAATGGAAATTCAGGCATAGTAACAGCCTCCACTCAAACCCGAGTATAAAGGTCACCAAGT GGTATAAAGATGTAGAGTGGCCCTTCTAGACAGGTTACCTTGCAAGTCTAGCTCTTAGGAAGCAACATGA TTGTCCACTGTAACAGGTGATCTTTTTAAACAAGAAACCTCTATGACAAGTATTATACTTTATCACATGA GGGTGAGATGAGAGTTGGTCTAGTCATCAGCCCTCTGTCTTCATCTAGAAATCAACTCTGTCCGTGCCCT GGTTCAAAACTGAGTCGCATCTTTCGGAAGATGACATTAATTCTTTACCAGCTTTTGTCAACTAATGGAA CAAACAGGACTGCCATAGTCAACTCTTGTCACAAGTACAGTGTATATGTACTAGTATGCTAGTATGCTAC AAACAGTATGGCTGTCCTGGGTTTTGATTCATGGCAAATAATCAGTTGAAGGTCAGCCCTCCAGACATAA ATAACCACATCTGATTGATGCCTGTAAAAAAACAAATTACACCCATGCACAAATCCATGGAAGATGGAAT CATCCAAGATTGAGAACAAGTGAGTTTACAATAGAGTGTACTGTTTGCAACAACAATGTTGTACATGTAG TCTCAGTATTTCATAGATCATTGCATAATGATAAGCCATGTATGTTGTTTTAACTAGGAGTAAAGCGAAA CTCTTCAATATTCTCTTGGAAATGTATTCCTAATATAACTCCTTGAACCTTCATAATATCTGTCTCATGG GAAAACATTCCTCCAGTATGTTATGATGATTTAGAGTACATCCTGCACCAGTAGTTGACAACGTTGGTCA ATGATGGTATGATTAGATTTAACATTGTCTGTAGCAACCAAATAACAATTGAAGGAAATTAGTTGTCAAA GTATTGCAAACCAAAGATGATTTTATCGGAATCTTCAAACATGCCTTATAAGCATTCCTCTAGTCTTCTG TGTTAGTTGATAAAGTGATCTCAATATTGTGTAAGGGCGCACCTGTCACTAAAGTCGCTTTCATTCCTTT TAAAGAAGAAAATGCTGTTCAGCTTAAAAGTGATTTTATTCTGTATTAGAAGTGGAGTTTATTTGATGTG ATAACATCAATTTTCCACTGGCATCCATGTTTGATGCTTATTCTGATGAGGCATTTTATTCACAATATTT TTGCTTCTTTTAATGATTGTCAGTGTAGCATATAAAGGATAGAGCACAAAAGATTTACTGCCGGTGATAT TCACTGACAAATCACTTTCATGGGATGTACTTTGCCTTTAATTTTTGAAGATAATGGTTTGGTTTTAAAA CATATACTTTTTGTTTTGGCTTATAATTGATTTCATTATAGCCTTACTAACAGGTGGTAGGCCTATGGGG AGTAATAAACTCCAGTACTTTGTGACTCATTCCTTCAGATTTTCATAGCCTCTGAATATCAAATTTCATT CACTGAGAAAAACAAAATTTAAAACTAAATGCTTTATCTTGTGAATGAAGAAATTGTGCCTTCAGTATTT GTTCACATTTCATAATTGCAATCATTAAATATGCATATACCTAGTAAGCCAAAAACCTTTAGAAGTTTTG TGTGAATTGCATTCAAGTAGATGTTGTTAAATTCTTTGGAAGCCGTTATGCAGCAAATTGAAATATTTGA ACTATTTCTTACTGTCCAGTCTGTTGAAATATTTATCATAAATGACACTAGCAATGGGAGTGTATTATAT ATTTATATGGTGTACAATGCTGCCAAGACTTCATCAAATAGTACATATACAATTGTCCTGCCTGTTCTCT GTAAGTTGTTAAAAAACAATTGTATTTATTTGAAAAATCCCAAGAGAATCAAGGAAGATAATATACCTAA CGAAGATACCTGTTTGATATGTGTGCACATAGATTTATAATCTAATTGATATTAACAACTCAAATGTTCA TGAAAAACAAAACTCAGTTTCATTGCTGCAGCATTACATTAATTGATACATTATAATCATTCATTTTGAG TGAGTTTCTTTGTGTAGATGAATAGTGAGTGAACTTGTCATGTATCTTTAGGTAAAGATGTCAAGGTGAC TTTTCATTTCAGTTTCTCTGCTCATGCTCAAATTTTTCTTTTACATGTAATTATTAGCAAGCATTGCTAG TAGGAATAAATATTAATATGAAATATCACTAAATTTGAACCTGCTATGTGAAATTGTAATATACCATCAC CAAGTTGGCATTTTGGAACTCTTTTAGATAAAAAAATTAAGTACTGTTTTGTTTTGTCTCTTGTGTTTTT TTAGATACTTTGAGTGCCTTCAGTTGCGGGAAATAACATGCCTTTTTCTTTATCCTTTCTTTCTTTTTTA TTCTGATAGATGAAATCAGCATTTGTATTAACATATTGCCTTTTAGACCTGATCATGAACTTGTGATGAT ACAACCTCCAAAGATTTTGATATGTCCAATTGTGAACGCTCATTCATTGTGAAGATAGCATTGTATCATT GATAATAAAAAGTGTCAGAATTAAAATTGGGATTGAAAATTCATTTCTTAACTCAGAGGATAGTTTCTGC TACATGTACACGTATGTGAAAGGCAATGGAATAGCCTATATGTGGTTGAAGTGTGTTCAACCCTGCCAAA ACAGGTGCGGATGCCCCAAATACTTTATGAACATTATTGCACATTTTATAAGCTAATTGTTGAGATAGAA GACATTCCTACAATCCTATCTGCAGCTGTCAAATAATGATAATGAAACTTTTATGACGCTGTAGGAGATT TTTTCCGTGATGGAGATTAGTCACTGATAACTAATGATGAAAATAATGGTCATTTAAGTATTTCTAGCAA CAATGTTACTGATGAGTAATCTTTCTAGTACTGGTCATAGCAGCTCTTTTTATGAATGTAGTACAGGCCA AGTGAGGTATGGGTACTCTATTAAAGGCTTTATGCATTTTGTTATATTTGGTTGTGCCTAAAGTCAATGC CAAGGTGGCCTCTGTCTTTGTCCCAATCCAAGTTTTATTTTCAAATATGTTTTTGATATGTTAAAAGGAA CACAAAATAATGAGGTAGTTTTTTCTGATACCTATTATACTTGTTCAAGTTGTATTCTCATAAATCATAT ACTGCTTGGATTTATAGGCACCTACATGTACATGTATGGTTATTTAATAGGCAGGTATTTTATTATCATT ACACATACCAGTTTTACTAAGGTGTTTCTACTTCGTGAAGATTAGATGGAATCATTTGAAAAAAATGAAT GCATCTTTTGTTTCATGGTGCTGTATTATATTTTCCATTCTTATTGTCTTGGGTTTAATGCTTTTTCTTT CTTTCATCATTCAATAGTGCTTTTGGTGATGGTCAGTTTCTTTTAGGTTATTTTGAATCATGGTGACAGT CTATATATAGCGCAAGTATTATTATCACTCAAACATCATTAAGTATTACATAGCTAGCCATTCTTTTTTG TATTATTTACCTTTAAAAGAAAATGGGAATTGTTGAACCAAAATGTTCTTAATGGGGTCTATGTACAATA GTATGACCCTTCTGAATCATACTTTTGTTGATATTAGAATCTTGAATTTAGAGTAATATTAATTTCTTGA ACTAACTTCTCTGCTACATTCAGTGTTTGGCTTTCTTGTGGTTGCTTTATTTCTTCATCTCAGTTTGTAC CAAAATGCTGTCAGCAGAATTATGTGAATCAGCTTTAGGAATAATATGATAATGTTCCTCTTCATAAATG TATGATTCTATCTAAGTATAAGTTTTATCCCAAGTATTCATCGTTGCCAAGTGCAACACACAGTTTCCCT AGCCCACCCTAAGGTTAAAACACTGATGTTCTAAATATATATATTGCACCACCTTTTATCTATAACATGA TCGTAGAGATTTGAGAAATTAACTCAAAGGTAATTCAGAAACATATTGTAGAGTATATCCCATAGAAATC ATGTTTAGATTCCTTACTACGTCATTGTATTGTTTTCACATGCTAAATGGTGATAGATCAAGGTTATTGA AATTGTGTTAGTTTTTGTTTGTTTAAGGTTCTGATCATGCATGTTGCATGACTACTTTGGAGCATATTTC AACAGATTAACCTATTTATATGTAAATTTAACAGAGTAAAATGATGAAATTAATTCTGCAAGGTTTTGCA GTCCAGATCATGTGATCAGATACATGTTAGTGCTGTATCTGTTTCTGTATGTATTTTGTTTATATTAAGC AAGATTAAATTGTTTTGTTTATCAAATCCAATGGTGATTAGAACTATATTTGCATCACCAAATTAAGCAT TATTTTACAGACCGGTAATTGTTATTGGTCACTGCACGTCATAGTGGATTATAGTCTAGTATAATTTCTT TGCTGTGTCTCATTTTTGTTTTGCTAAGATATCATGTAAATCTTGTTTTGTCTTCCGATCAGAAGTGTCT TTAAATTGTTTGTTAAGGAACTATATGTGTCCATACATCTAGAACATGTAAGCTTAGAATGGTTAACATA TTTAATTGTCATTGGTGTAAGTTACCTAAATGCAACTTTATTTAGTGTTGCAGTTGCAGACTTGTTGAAA TGCATTGATTGGACCATTAACATGTATCTTAGGAAGTGATGAAATGACACCACTATTTTCCATTTTATGG GTAAAAAGGACCCCTTCTTTTTAAAGTATTCCCTATTTCACATTCCACTTTAAAGGACATTAAATAGATT GTGTATTTTCAGACGGGTTATCTAGCTTTTGTATACCTAGACCAAATATTGTAATCATTTATTAACATGT CTTCTTCGAGTACAAGCTGTACATATAGAAAAGAATTATGAAATTTGAATTATCTTTTGTAGACATTATT TCTATATTCACTTCTGTTGAAACAAATGTCACAGCTCTCTTTATATGATGTCTCCTGATATCTTCCTTTC TGATAATACCCAGAAATTCCATGCAGTGAGCCAAACGCATTCATGAATATTCCTTTACATAGAAACTTTT GATTTAAATCCATGGATCCGTATTTTACAAATTCACTTAAACCAGGCCTTTCGTTTACAATCACATTTAA ACTTAAGGACAACTTAGACCTCAGACTAATTTCCTTTGTTCACCCCGATTTTGAATGAAATTCTAAATCC AGCGGCAGGTTTAAATTTTAGTAGAATATATGCCTTTGTGTTTAGTATAGAAATACTTGGAGCAAAAACT CTTGATTTATTCTCAGCAACAAAATTTAAAAAAAGAATCTTTCCCTGGAGAATTACCAAACTGAAACTGC ATTAGAATACGAGGTGCTATCTGATTATACACATACCAGCATTTTAGCAAATCATTTTCCTTTGATACCC TATGGAAAGCCAAAATAAGAATTCATATATTCCCATCCATTAATTGAAAATGAAATTTCACTCTCATTTC TTTTTCCCTTTCCCACCAGCTATCATATATCCAAAATAGTTAGATTTGAATGTTCAACTGTTATCATGTA CCATATATTTTCTGCTTTGTCAGTACTATTCTTGGTGCAGAGATTGTAATTTCAAGTGTTGGAATTTGTA TGCGGGATATAAAAATACATACGTGTGCTTTTTGACAACGGGAATTTATTTATGATAATCATTTGTTTAT GATTGTATTAGAAGTATTGGAAAATCATGTAATGATTATACTAATTGATTTACAAATCTCAGACTATTCT AAAGCATTTCAAACTGTCAGGTTATCTTTGATTTTAATTGTTCATATAAAGTAGTAATGTCATAATTGTA TTGTCTACTTGAACCATGTAATAAATAATTGCAATATATAAATCCAGAGAAGAGAATGATATGTATGATT AAACAGTACACAAAGCATCCAAGAATCACTCCTAGATTTCTTGTGTATAGATGATTTTTAGGAGAGAGTT ATAATTATTTGTAATAACTTGTATAATATTGTGATTTATAATAATTTTCATGTGTTTTGTCCAATATGCA TATATTTGTGAAGAAAAAATATCAGTATATAACTGGAAAAATGACTTTTCAGAAAATAAATGTTTCAGAT GTTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds