Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038212374.1 PREDICTED: Patiria miniata ATP-dependent RNA helicase DDX1-like (LOC119737778), mRNA GGACACGTGTACGCATAAATTATCAGAAGTGACAGTTTTGGGTTGTGATTCTGCCGCCGCTCAGCGTCAC CATCGCGCATCGTCTGCTCATCAGCTGCTTTTCGAGCGAGGGGGTTTACTTGACTTGAGAACCTCAAAAT AAACCTCACAATGACGGCATTTGCTGAGTTTGGGTGCATCGAGTCACTTGTGCAGGCTGTTGAAGATATG GACTGGCTGCTGCCTACCGATGTGCAGGCTGAGGCTGTTCCATTAATCCTCGGAGGGGGTGATGTCTTGA TGGCCGCAGAGACAGGCAGCGGAAAGACAGGGGCCTTCTGTCTACCAGTGATTCAGATTGTCCATGAGAC ACTGCGAGACGGCACAAGTGGCAAACTGGAAGGAAAAATCAGGGCAAAAGCAGACACATCCAAATGGCAG ATGAATGTGTTTGATAGAGGCGAGGCAATGGCCATTGATGCAACCGGTCTTTTGTGCCAGAGTAGAGAGG CTTCATGGCACGGTACTCGCTCCAACCGAGGAGTTATTAATAGAGGCAAATACTACTACGAAGCAACTGT CACTGACGAGGGATTGTGCCGTGTTGGCTGGTCCACGTCCGATGCAAACCTGGATCTCGGAACTGATAAA AACGGCTTTGGGTTTGGAGGCACAGGAAAGAAGTCATTAGGTCGACAGTTTGATACCTATGGAGAGCCAT TTGGCAAAGATGACGTCATCGGTTGCTACTTAGACTTGGACAATGGCACCATTGAATTTTCTAAAAACGG CGTGTACCTTGGTCATGCATTTGATATCGCCCAGCACCTTCTCAAAAAACCGATCTTTGCTGCTGTTGTG CTGAAGAATGCAGAAATGAAGTTCAACTTTGGAGCGACACAATTCAAGTATAAACTAGAGGGAGGGTACA AGGCCCTATGCAAGGCTACAGATGACTGCGTGATGAAATCGCCATGTTCAGGAGCCCAGCAGGCCACAGC TGGTAAGCCCCAGCCCAATGCACCCAAGGCTATCATTCTAGAGCCATCAAGAGAATTAGCTGAACAGACC CTGAATCAAATCCAGCTGTTTAAGAAACATCTGAAAGAGCATTGCCCCAGGGAGTTGTTGATTATGGGAG GCATGCCAGCTAAGGAACAGATTGAGGCTTTGCAGGAAGGGGTTGATATAGTAGTAGCGACCCCTGGTAG AATTGATGACCTCATCAGCACTGGCAAACTCTCTCTGAATCAGGTTCAGTTTTTCATTCTTGATGAAGCG GATGGTTTGCTGTCAGCAGGCTATGGCCAACAGATCGCACGCATGCACAACCAGATTCCCAAGGTTACCA TGGACGGGAAACGACTACAGATGATAGTTTGCTCAGCGACACTGCATTCATTTGAAGTGAAGAAGCTTGC TGAGAAGTTGATGCATTTCCCGACCTGGGTTGACCTCAAAGGTCAGGACAGCGTACCGGAGACCGTTCAC CACGTGGTTGTCAAGGTGGACGCCATCAGTGACACCTCCTGGCAACGGAAAGGAAACAAAGTACAGACCG ATGGAGTTCACAGCAATGACAAAATGCAGTATGGCAGTCAGAGCAGAGAGACTCTTTCGGAGGCAGTCAA AATCTTGAAGATTGACTACCTGCTGAGGGCCATCAACGAACACGAGATGGATCGTGGGATCATCTTCTGC CGTACCAAGATCGACTGCGACAATGCTGAGAAGTACATGAAGCATCTAGGCGGAGGTCCCTATGCCACTG CCAATCATCAGTATTCCTGCGTCTGTCTCCATAGTGATCGCAAGCCCCCAGAACGCCGTGACAACCTCCA GAAATTCAAGGATGGTAAGGTACGTTTCTTGATCTGCACTGATGTAGCCGCAAGAGGCATAGACGTCAGG GGAGTCCCATATGTTATGAACGTTACTCTACCGGATGAGAAGGAGAATTATGTCCATCGGATCGGCCGCG TGGGAAGAGCTGAAAGGATGGGTCTTGCTATATCTTTTGTGTCAACGGTACCTGAAAAGGTGTGGTACCA CTCGTGTCCTAGTCGTGGGCGTGGCTGCTACAACACCAACCTCAAGGAACATGGAGGATGCTGTATATGG TACCAAGAAATGCAATACTTGGCAGACATTGAAGAGCATCTTGGTGTCGTGATCGACCAAGCTGAACCCG ACATTAAAGTGGCCGCCAATGAGTTTGACGGCAAAGTAGTCTACGGACAGAAGAAAATCAATACAGGGAG TAACTACAAAGGCCATGTTGCTATCTTGGCTCCATCTGTCAAGGAACTGGCTCAGCTTGAACAGCAGGCA CAGACGTCATTCCTGGGGTTCTCAGGGGTGCAAAACACGTTGTTTGCCGCATGAGGGGGGCGGGGCTAAA GGTCCAGGAAGAAGGAGGCGGCATGCTGGAAGGACCACTGTTGTCAGTCCTACTTCATAGTTTTTTGTTG AAGCTAGACAGTCTTTTATTGAAGAAATCCTTGGTCGCTTAGCACACCTTCATTCTTGCATCCAGCATAT CCCAGAACCAAATGTGAAGCGTTCTTGCAAAATGACACACAACTGGGCAGACGTCAAAATGAGTGTTTGT GAGTCTTAAGAAAGATAACAAAATTCTCTTTAGAATGCTGTTTGTTGCACTTTAATCGGATATTCCGTTG ACAAGTTATGGCTATTTAAACTTCGCATTTTTCGACATGTCAAAAAAATAAAATACTGAGAAAAAGGCCT TCAAAGTTTCGACTGTTTTGTAGTCGTGAATATGAAAGATACCAATTGTTTTTCCTCAAAACACTTTTAT TCCATGATTTGTATAGTATTTCTTTCAAATAAAATGTGAAGCAGACATATCAAAGACTAAATCTGAAAAT TGAAAACAAAATCACCACCATTTTTTTTTTTTTTTTTGTGCATTTTTCTCCACTGCGGCCTGTGCCCAGT TTCGTCTCATTTTGCCATTGCGCTTCACAAGTGTTATGGAGCCACCAAGCTGAAGAAGTGTTCAACACAC TGTATGTAATAAGCAAAAATACACGCAGAATGCGGAGAACCAGTTAAAAGTAATGTGCTTCAAGCTACAT TTTGGCTGGTAAGCCATGTTTTGCTTAGGCAAATATATTGTGTGCTTAGCAGATTCCCATGCTTAGCGGC TCATGAAATGGGCCTCAGATCTTCTGATAAGTTTAGTTTACTGTCATAGTCTCATTTGTCTGCAACTGTC AAAAGTTGAGGTCGGAGAAACTGTGTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds