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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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Blast program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030980730.1 PREDICTED: Strongylocentrotus purpuratus erythroid differentiation-related factor 1 (LOC100890727), transcript variant X3, mRNA CCCTCCATCCATATTCTTTCATTTCATACAATTTCTTTTCTATACATGTTTATCATTCCTCCATTCCACC TACTCATGTGTTGATAAATGATTGATATGGAGAAATGAATTTCTGAGATATCACTCCCCAGTTACCTTCT CAATCATATGTTAGCCTATACTACTTATTTTTACCCTGGTTTCACTTTGCCTTATAATATGAAACTAACA AAGTAGATACAGACTCACACAGATGCATTTCTTCTTCACATGAAATTCAATTTCTTTATTCAGAACATCA AAAAGTTGCTGAAGATCCCCTTTAGTAACGACCAGGTCAGCTTGGCGGTCCATCGTATCGGAAAAACTCT TCTTCTGGATAAACTCGATCTCTATAAGCACCTAAGGGATGCCTCACAGTCGGAGCAGAAATGGTTAAAG GATGTGTTCATGAGACTGGTTCAGAATGACGGCGAGAACAAGTTTCAGAGCCAGCATAAGACCTCAGAGA ATAGACAGACGTCAAATCTCCTCTCCAAGTTCCTTTATCACAGCTTGGGACCAGGGTACAACATTGAGGA GACGGAGGAAGGTCAGATCCCTGAGTTAGCCAAAGCACTGCAGCAGCTCCCAGCGCCACCAGAGGATGAT GTAAGTCAGTTTGCTCGTCAAGTCATCTGGCAGTTTGAAGACATACGGATGTTGATTGGTACCGATCTAC CCATCTTTGGTGGTACAACATACCCCGCAGTCAGTCTAAGATTAAGAGATACCCAGAGTCCGATAAACGT GCTGACTGGATTAGATTACTGGTTGGATAATCTCATGTGTAATGTGCCAGAGCTCGTCATGTGCTACCAT CTTGACGGATTCGTACAGAAATATGAACTCATCAAAACGGAAGAAATTCCCAAGCTGGAAAATGCCCAGT TCTCACAAAAGGTTGTGAAGGATATTGCTCAGAACATCCTCTCCTTCATCAATAGTAACTGCACCAAGGA GGGCCATACGTATTGGCTGTTTAAGGGCAAGAACGATGATGTGGTCAAGCTGTATGACCTGAGTAGCCTG ATGACCGAGCACCCAGAATGCCCGTGGGACAACCCCTTTGTTGTCCCGGTAGCCATGCTGCTTTATCGTG TTGCCCACAACATGGCCCAGGCTGACACGATATCTGCCAAGAACAAGCATATCATTGTGTACCTTCTGAA TAAGTGCCTTTATTTACTGGCTCAATGCAGAGATCAACATTTAGAGATTGTGGCCCAAGCCAACTTTATC CTCTGTCGGATGTTCATGGAAGAATCCAGGCAGAGTCGCCATGGCAACACGGGAGATGATGATGGTTCAG ACTCGGCTTGGAACGGGAGCTCGACAACCAGCAGCGACGTGGAGGACGAAACCAACGATGCAGTCGATGA CGACCAGGCAAAGAGGCCAGAGATTGTCCTCCCACCAATCAGCATCAAGAATCTTACGGTCCCTAGCAGC AAGACCTGGAAATGCAAAGACATTGACAATAAGAGGTCAAAGGTCAAATCATTGGATGCATCAAAGGCGG AGAAGGCCAGGCAGATTTTGGAATATGTTGCTGATGGTTTAAAAGCGATAAAGAGCAGCATCCCCGAGAC TGCAACCGGCGCACACCCAGCACCAGCATCACCACCTTCCCATGCCGCTATGTCACTGTCTTTACCCCCT TCGACACCCGACCGTAGCCCCCTGCCTACCAGCAAAGCCATCCCACTCCGGGACAAACCACGAGCAGCAG ATCCACGAAAAGCAGAACCACGAACAGCAGATCAACAATCGCCAAGTAGCATTTCAGGAAGGGAGAAAGG TGAACAAAGCTCTGCTCGTGGGGCAGATGGGACTATGAAGCAGGACTTGGGTCAGGGTAGCCTGTTCGTA GGAGGAGATGTTGCACATGATGTCAAGGATGTAGGTGGGTCAGTCCAAAGGTATGCGGATAGAAAGGACA CTGAGAGATCCTTGGAGACATTGGTTCAAGAGATGGATATTGGCAGAGGAGGAGATTCAAACCAAGTGTA TTCTCAGTCTGCAGATGAATCGAAAGCAAGGGATGAAGATAGTTGCGAGACATCATCAACAGGAATTCCA AGTGACCAACTGCAGCTGAAGGATGGACCCGCTGGAGTTGAACAGTGCAGTGACCTGGTGGAGTCTGACC GCTCACCAGGCAGCAGGAGCAAGGCAGTGGCCAAGGAGAAACCGTTCCCTCCAGGTTCCTGGCAGGAGAC ATCGGGTCTGCGTCTGCTGGAGAAGGCTTATCAGGCCTACTGCATACTGACTGCGTTGGCATGGGAGGAG CATAAACATGGCAGGGCGCTTCTTATGGCACAGCTGGCTATCAAATGCCACAATGCCAGCAGGTCGACCC ACGGTGGAGAGACTAACGTGTACAATGTTCTGATGATGTGCGGCGATTCCTATCTCCTTCTGACCCATGA CCCTAGCAACCAGCATCTTCATCACGAAGACTACCAGAACATCTCAGAGATGGATACCTTCATCCTAGAG ACGGCTATCATCCAGCAGACATCCCATGAGTATGAGTGGGCAACTGAATTTCAAACAGATACTGAAGACT GTTTGGAATGCAGCATCAAGTGTTATAAAGCTTGTCTGGGTGATGAGGTGAAGAAGGCCAAAGCATTCAA GAGGGGTGTCGGTCAAAAGCTCGGCAATGCTTGCAATGAGCTTGGTGTCTTCTTCATGAACACTGCTGCT AATCTGGCTTCCGTCAAAGAATCGATGCCCAGTACGTTTGAGCAGGAGCTGTGGAAGGGGAGTTACCGTT GTTTTGACACCGGTGTGAAGTCCTTTGAGGAGGTTTCCGATTCTACCAACGTGGCTCTTCTCAATTGCAA CATGGGTCGTCTGATGAGACTCTGCGCCCAGAGCTATGCTTCCGGGGGTAGCATGGGACCAGATGCAGAG TTCAGTACCAAGGAGAAACATTATTATCTGAAGGCGGCGGAGTGTTATGCCAGGGGTCTTCACATCCTGG GGAACAAGAGCGGCCATGTTGCATTGTGGGATTCCATCACGTGGGAGCTGTGCTCGACTTATTTCAACAT GGCGTGTCTGTTGCAGGATCAGCCTCCAGTATCCACCTCCAATCTTGCAGAGGTTGAGAAGGATGTGTTG GAATTCATGAGCAAAGCATTGACTCTGTGTGACACAGAGGAGACATCATCCAGCAGACAACCTCTCTACC AGTACAGGGCAGCTACTATCCATCATAGACTGGCATCCATGTACCACAACTCAATCAGAAATCAGTCCTC CCACATGAAGAAGAAGCACACTAAAACGCTGGCTGAGCTTCACTACACCAAGGCTGTTAAACTCTTCAAG GAAATGGATCGCCCTGTGGAACTACTGAGAGTGGAGCTGGAGAGGGTGGCATTGCTAGAACATCAGTTTG AAAATCAAACAGGAAAAGGACCCAAAGTGAAGACATTAGAAAGCGCGCTTGGCATCATTCTGGATTGCAG TTCTGTTATCCATCAGCTGGAAAAACTGAGCTACAAGATAGTAGCAAAGACTGCAGATACAGAAGACTTG AGTAAGAAGGATATTGTGGCTTCCAACGAAGGAGACGCAGGAGGACGCAGACATCAGAAAGCCATGAAAG GCGATAACAAACAAGATTTTCCTAGAACAGGGCAGAGGAAGCAAGATAGCGGAAGCTGTAGGGATGATGT AAAACAAAAACAACCTAAGGGGAGTGATGAATCTGTAGAAGATGTGAAGCTTGATGTCAGGCTGTCTACT GAGAGACACGGTGATGGTTCGTCCGATGTAAGGCGGCTCGATGTGGGTCAAGAACAGGCAACGACTGCTG AAGATGCGACCTCTGAGAAAGAGACGGACGGAAGTAAAACAATGGAAGAACAGGGCCATGGAGCTGATGG AGACCCTGCACGGGAGGGAGCTGGAGCTGATGGAGATCCTGCACGAGAGGGAGCCGGAGCTGAAGCACAA GGAGCAGTAGGAGGAGCCAGCGGTGGCAATGATGATGGAGCCGTTGAAGGGACGGTAGGGGAGGAGGACG TGGCAGCCGGTACCAAGTCAGAAGTGGATGAGGTCAAGAGACTGCTGACCATCTTTGAGAGTCGTCTCCA GTATGTCCTGCTTCATCTGGTCAAGTTCATGAGTGGTGGCAAGCAGAGTCCTCAAGACGAAGGCCGCTAC AAGAAGATGTATGTAGCATCTCTAGGCAGACATCAGATTCACAGCTCCGCTGACTCCGACAAAGCTAGCC TCAGCTCAAGACTTCAGGATATATGCAATATTTCATCTTCTCATAGATAACAGATGGAGGAATTAAAATG AGAAGTGGAGAGA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
