Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT108244.1 TSA: Strongylocentrotus purpuratus WHL22.215060.0 mRNA sequence CGTACACAGTCACTCGAGCAAAAAGCGAGAAGACACGGAAAACTAATATCGAGCGTTTGCATTCGCCTCT CTGTGCATCCACCGTTCGACCATTCTGAGTTCATATCCCAGTAGAAATTCATTTCAGTAGGATTGTGAGA GACGGCTGAACGCTAGCGAGAGAAGAGGAGAGAGAGAGAGAGAGAAGGAGAGACTGAGGGAAATGTCACC CACAATGTCAATGGATGTTTATTGATCGCAACATAATTTGGATGTAATCAACTCGCATTGATCAGTGTTT CGTCCTCTTCTCCAATATCCACATGTAGAGAGAGGCTGGACGCATCGCGACTCTCGACAGAGGCATCATT CTGATTTTGTTCTCAGCTGGAAACAGCACCAGGAGATTTGATTCCTGTTTACTTCCTCTCTCGGAATAAA AATCATTGTCTTTTGTGATAACGAGGACTATAACAAACGCTTATGTGATGTGATATAATCGAGATCAAGT ATATTTATTTGGATCTTTATACTTTTTGTGATTAAGATATATTTATTGGATATTATTCACCCTCTCTGGT ATATCACAGCTCAAGTGATACAACATAATTTGGATTTACACAACATACTTTTTTGGATTTGGATTAAACA TAACTGAAGTAAGATGCAAATTGTAAGTCTTTGTCTAAGGAGGACGGAGCATAGTAAGATGGCTTTGTGG TGGTACGTGGTTAGTGTTTTTGTGATTATGGGATTTGGCAGCTGCCGGGGAGCCCGCTCTGGTAATAGTG GTATCAGCATGTTTGCGGCACAAGACTCCCGGAGAGACCCATGCTACGGAGAGAACAACGTCCCCAAGCG ATGCGAGCCGGACTTCGTCAACGCCGCTTTCCAGGCTCCCGTCGAGGCCTCCAGCACGTGTGGGGATCCT CCGAGTCGCTTCTGCGCCTTGTCCAGCGGCGCAGAAGGTGAGAGGCAGAGGAACTGTTTCATCTGCGACG AGAGCCACCCAAAACGCCGTCACCCGGCATCCTACCTGACCGATCTGCACAACCCCAACAACCTGACCTG CTGGCAATCAGAGCCTTTCACCCAAAGCCAGCACAACGTCACCCTGAAGCTGTCACTGACAAAGCGCTTC GAGATCACCTACATCTCCATGGAGTTTTGCTGGCTTCACCCAGACTCCATGGTCATCTTCAAGTCGCAGG ACTTCGGCAAGACATGGCAACCTTATCAGTACTACTCGAGCCAGTGCCGAAAGACCTACGGGATGCCTAA GAATGCTGTCATCACCAAGCAGAATGAGCAGGAGCCAGCCTGCACGGATATCCATAGTTCGGATCTTATC GCCGGTTCCCGGGTGGCCTTCAGCACCCTGGAAGGACGCCCCTCCGCATACGACTTCGACAACAGTCCCG TCCTGCAGGACTGGGTCACGGCCACCGACATCAAGATCGTCTTCAACAAGCTACCGGTCCTCGGTGAGAA CGAGGACGAGAACCCTCGGGAGAGTCTCTACTACGCTCTCTCGGACCTATCCGTGGGCGGACGTTGCAAA TGCAACGGACACGCGTCGAGCTGTGGCCCAGGACGGGACGGGGAGATGGAGTGCGACTGCAAGCATAATA CAGCTGGAAGAGAATGTGAGCTTTGTAAGACCTTCCATTACGACAGACCTTGGGCCAGAGCCACCTCAAA GGAAGCCAACGAATGCATACCATGCAACTGCAACCTGCACGCACGCAAATGCCGGTTTAACATGGAGCTG TACAAACTCTCGGGGAGAAAGAGCGGTGGGGTCTGCCTCAAGTGTCGCCACAACACGGACGGGAGGTACT GCCACTACTGCAAGGAGGGGTACTACCGGGATCAGTCTAAACCTATCACGCACAGGAAAGTTTGCAAAGC TATCTCCGATGCACCCGAAGACTTGACAACTTTCCCGAGTCTGCTCTCTGATGCTTCTCAAGCTTGCGAC TGCCACCCCATCGGGTCCCTGGGCAGCATCTGCAACCAGACCACCGGCCAGTGTCCTTGCAAGGATGGCG TGACCGGTCTGACATGCAACAGGTGTTCGTTGGGTTACCAGCAGAGCCGCTCTCCCGTTGCACCGTGTAT AAAACATCCTCGAATCACAAGCCAACCTCAAGAACAGCGAGATGAAGCTGCTGCAAGTTCACAAACCACA GATGGCGACTGTCCAAGAAATTGCGCGGGTTCAACGAGAAAAATTAGTCAAAACAAATACTGCAAAAAAG ATTACGTTCTCCACGCGCACGTGTTATCGCGAGAGATGGAGGACGAGTGGGTCAAATTTACGGTCAACAT CGTCACCGTATACAAGCGGGGCGAGCAACGCATCCGACGGGGAAACACCTTCCTCTACGTCCGGCAGCGG GACCTGACCTGCAAATGCCCCAAGATACGGCTCCGACATCGCTACCTGATCCTCGGGGACGAGGACGACT CGTCGTCGAAACGGGACGGCATCGTCGTCGACAACAAGAGCATCGTCCTAAAATGGAGGGACGAGTGGGA TATGAGGATGCGGAAATTTCAACGAGAACAGAGACGGGATGAGTGCTAGGTCAGGCATGGGTGTTGTACT CTTTTAAAAGATGAGGAAGCGACAGACTGAGACTCAAACCACAACTGGTTTTTAATGTTGTCTATAATTC AATCCAAGAGGAAAACGGAACGGATGACGTCATTGAAACGGTACTTGATTTTATGAGCCGTGATGGACAT GAAGACCGAATGGAGATGTGATGATTCGGGGCTCGATCCGAGTGACTATTGGAGATTCGGACAGATTCGG CCGATAAATGGTCATCAAAGGACAGGGTCTACGATCGTGGCTGTTCTTTTAAAGCCCGACAAGCCATCAG CAAATTGAACACACATCTGAGAAAGAAAGATTAAAGGGGTTATGTGACGGAGATGAATCACTTATCATGA CTTGCGTAACATATATTTTCGATCGGGACATATCAAAGCCAAAGTGTTTGTAATCAGTTAAATTACTACA TGTCATTGAACAAAAGTGAATGTTGTTGGTATTTGGATATTTAATGAGATTTCGTTGGTATCCCACTGCA CTTATTTAAAACTGCCCTACATGTATATCTCACTCGTCATTGGTGTCAATGTTTTATGGGCATTGTATTT TCGGCATGAAAAAAAGCTTCCATTGGTGTTTGCTAGTGCCAAGAAAAAGGCAGCATTGGACATCGTAAGG CATGTAATTGGTTCTTGGTATCGAAGGTGTTAATTTATTTAATTCTCTCAATTTACGAGAAACTTCTGAA GATGTATCGTATATTTGGTGCCAGTTTAAGAAAGGCACGTGTTCTAATGAAAGGTAACGATTCAGATATC ACTGTGTTTGGTTAGTGTTAACTTGATGGATGTAAATGACTCGAATTGCCAAGAAACTATTTCCAGGAAT TATAACACCTAAGTCATTTTGATTATCTGAAAATTACTACAATCATGCCTGGTTCTCACACTCGGAGCTT GACTTTTACGTTTCTTTACAACATCATTGCCAGATCAACTTCCAAATTATAAAACATGATTCAGAATATG CCGTGCTGTTGCCATGTCTTTAGAGATTTGGCGCCACTTTACGGTCGTGAAGAGTGGTGGATAGCCACAG ACGAAGAGACACTGCGTGCATTGTGTATGCGGTTAACGATGGTTAGCAAACCGATGAGAAGGGGTTGGGC ACCATTTCGTACCGATTCGCTGTATGTGTGAAGTCCCATCAAGATGTAAATGTAGTCACGTGATCTAAGG CTGAATATTTCGTGCCATATTATTGTGTATTATCCGTCTTCTGTTGTTATTTATATTTCACAATGTACAT AAACAAATAGGTATCTTTTCTTGTGGATGCTAACAACGTCATGATGTTTGATAGGCCTATCTATAGTCAT CTTAGTAAAACGCTCTTTTTTACGTTTAGTGATTATTTCAAGAGAAAAATACTATTTTTGTTATTTAAAT GTTTCTTAAGCGTAATTAATCAATAATTTATGTGCGTCGGAAAATAAACATGCACATATAAACCGTTATT GAGCGGTTGCATCTATTTTTTCCATAATTATTGTTTTTTAAACAGTTTCAACAGTTGTTGAATTAATGGT ACCTTTATTGATGTAAATTTCTTTCTATACTATTTGAATTTGTATTGAATGTTAGTAGTCTACAATCCCA CCCAACTTTATTTTTTCTCCCCAAACAACCTAAAATTTTATATTTCCAGCATCGCTTTGTGTTTAGGGTA TCGATATTACCTATATAGTTTGTGTTTTGCTTTAAATAATGATATTTTTGAGGGAAATGTCTCTCTTTTT ATTGTATTCTAATTGCTAAACGAATAATGATGTATTCTCTATGGTATATGTAAATATTTTATTTAATGAT ATGACATTAGGAGGCTAAATAATGAATTGTATAAAGTGCTTGTACTCACATTGATGCTATATATTGACAG TAATTACTATAAAATAACAAAATGGCGACACTTTTACGGCGTATGATTATGTGCACAGCAGTATGATATT GAAAAGAGATATTTGCACCAAATATATCAACTGAATTAGAAAACCCCTTACAATCAAATGCACATTTCAA TTATATCCCACAAATGATTAGAATATTTAGTATTGAATTGGAAGCCAAAGTTTAATGCTATCAAACTTAA CCTAAAGCTTATGTAACTAGTCATAGCCTATTGGAATAACTTAGAGTAGATCTTGCTTAGGACCACTAAA CGCTGAACGTGATGAAATATGTCTGTGGATAAGAAGACTAAAAGTCGTTTTTAGACATCGGAATTAAGCA AAGAATTTCTTGCAAAAAACAACAATTAGTTTTGGATAATAATCAAAATTTAGGGTAGTCATATCGACAT GCATTTGAATCATTGTAATCACAGTAAAAACGGGTAACCAAGAAGAAATGGAAATAATGTACCAGTTGTG CACAAGGCGTCACTCGCTAGCGTAGTACTGCGTCATTTGTTGACGTAGTATTGCGTCAGCGATTGCTGCG ATCTTTGATGTGCCATGTGCTCAACGTGAGAGATGAATCATACAAAGAGTGAATGCAAACGAACAGTGCA AACACATTGCATTGAATTGTTGACTTATGCACTTTTTGGCTTTATAGGCTTGATTAATTAGCGCGAGTAG TGGCGCAACTGAAATGACACATCGGGCGCAACGGGTATTATGGTTTCCAAATCAAGAAAAAGCATTGCGC CAACCATTTAAACGTGACTTAATTATGAATGTGATGAAATTACAAGGTGCAGAAAAAAGGCGTTACTCAA GCTTCAAAGGAAAACACGGTTGACCTACATGGGGGTATACCATTATGTATATGGCAGTATTTGGGGGTAA ATATCGTAAATTTATTGATTACGTCACAAAGCTTTAAATCATACTATCATGCTGTCGCCAGTGAGGTGAA TATATTTGTATAGCTGGAGATCGTTGCCATGTGAAACCGAAAGCATTCATGTATTCGTGAAATTAAAAAA ACAGAATGTGGCCAAATTTGCACTAAATTTGTGATGACTATCAATGTCTTGTGTAATATATATAAAAAAT TGACATCTTTTGTATAAAAAAGAAATCTGTTTGTAAGCGTTCCTCATTTGCATTCAGTCATGTGTCATTC TACTCACAATTTCTACCTATGAAATAACTAGTTTTAGAGAGCAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds