Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990957.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115926321 (LOC115926321), transcript variant X1, mRNA CACATCCCCAGGTTAAACTGTTTGAGTTTCGTCTCCTGATTGTGCTATCAAAGACAAAGGGGTGTAACTT TACCCCCCTCATCAAGAGCGGAGGGTTAAATAGAGAAAGACTGGTCGAAGACAGGTCATAATATTGCTAA TTTTTGAGACGATGATGAGGTTAAATATTTTGCTGTTCGCGGTTTTGGCCGTGGCGCGGTCCATGCCCAC AGAGTTGCAATGTGACATCGATGAGGCCCATACGAATGTTGGAACACCACGAGTAGCCGACGATGACTCT AACTCACTCATGATCTCCAACTTTGAGCTTTCACTCGACGAGGTCGACGAGGGCTTCCTACCCGAGATCG AATATGCAGTCAGTCTCAAAAGCAACAGCGACCTCTTTCAAGAGTTCCTGGTCACTGCACACAACATCGA TCCCCATTGCGATCACGGAACGATGATTGATAAGTACGATATCGGAACGCCAGATGAAGACTGCCCTCAT GTGATCAGGCAGGCAATAGTTTCGGACATGCGCAGAATATCGTTCAGCTGGAAGGCGCCTCAGTGTGGTT GCGTTTCTTTTAGAGCTACTGTCAAGACTGTTGAACACGTGTACTCTGAGTCTTCATCGGAGAAGGGCTC CCTCTTCAAAGAAGTGTGTTTAATTGGCATGAACAAGTCAGATGAAGAAGAGGAGATGGAAGCGATGGAA GAGGAAGAGGTTTTGGAAGAAGTGCCGTTCTATGATGAGGAGCTCTATGGGAACATTGAACGACTATGCG AGGAAGGAAACTTTAGAGGAACCATTCTACCTGCAATCGTCAAGGAATGCTGCCTACTTCCAGTTCAACA ACGCAGAATGTGTCTGGTGCGAGTCATCCCAGGTGAAGAAGATGATATCCACAGGTTGGATACCTTCTGC TCCAAGATTGCAGGAAACTTCTTCAACGGTCACCCCGTCCTATCCGACGCAGAGGGCGTGCGACGATGCT GTGAGCTGACTAGCGATTCGGATCGTATGGTTTGCCTGAGCGAGGAGAAAAGAATGCACTATGACGAAAT CTGCAGTTTGAGTGGGGCTAGCGTGAACAGCACCGTGGAAGATCGTTTGCCCGGTCGCAACTGTTGCAGC CTCCAGGGTGATCTCAGGTACAACTGCATGGAAAAGAAGGCACTGAGGGAGAATCAAAAGAAACGTCTGG AGGAGAGGCGCAACATGAGGCGCAAGGTGGAAAAGGTGAAGCGTCTTTGCAACGCTGTTGACCAAACACC AGAAGGTGATAGGGACAGTGAGGATTACCAAACGTGCTGCATGGTTGAGGACGTGGACGATGCATTGGCG TGTTTCAGGGAAGTCGAGAGGGACAACTTTGATGGGTTGTGCAAAAAGCAAGCCTTGCGATACAGCAACG GTAAAAAGGAAAGAGTTCATCCATGCTGCAGATTGGAGAGTGAAGAAAGGTATGAATGTTTCTTGGTAAA ACGTTCGAACAACCAACAATCAAGAATTAACTCAACAAGAGCACCAGTACCGAATACTCAAGGTTCGACT CGACCGACATTCATGCAGAGGTTATGTGCAAAGCTTCGAAAGGACGATGCGGATGACACACTCATCGCTT GTTGTCAGCAATCATCATTTCTCAAAAAGAAGAGATGCATGGACAAGAGACAAAATTATGCTTTGGCCAA AATTTGCAACGCCAGCAACGTAAGCGTTTCATACGCCATTGTTGAGGGAGAGAGTTTCAACGCTGCCAAG AAGAACCTTCATCCCGAGCACGAATGCTGTATTCTGAACGAAGAGGAGCGGATGTCCTGCATCAGAACAA TGAGGATGTCAATGTCCAAGCTTAGACGTCAGGATTCATCTGAGAAGCCGGTGCGTGTAGAAGCTGCACG TGAGCAAAAGGAACAGCGATGGGTGAAGGAGGAGGGCCGTCAGAATAAAGCCATTTGCGCTGCTGTGAGA GAAGACGTTGATATGATAGACGAGCAGGTCGTCCGTTGCTGCGAAAACGACGGTGAAAGTCGGCGGGAAT GTCTAGCTGTTCTCCGTAGGAACCACTTTACCGCTATATGCAATACCGATGACTTGTTCCAAATAGACAT TTTCAGTACCATTTTGCGCACAGAAGACCCAATCAATGACGAACATAGGTGTTGCATGAGACCGAACGCC GATATAAGAGCTGCGTGCTTCTCTCGCATAGATCGCCAGGTCGCGATGCTGTCCTACAGTCCCCCAGTTA TTGAAGAGGTGCAAGATATTCGAACAGAGCTCCTCGCCGTTGCAGAGTTCAACAGAATCGACAGAGTCTG CCAAGAATCGAAAAGTGCGACCTCGCTTGAACTAAAGGGACGATGGCCGGTGAAAAAGTGTTGTAGGTTC CAGAACAATCGAAGGTATACTTGCCTGATGGACGCCGCAACAAAACTAGCTGACCAATCGTGCGACGGAC CTCCTCCTAGAGTATACTTTCCAATGGGATTCTACGGAGAATACATCCCAAGTGACTACACTGGCCCTTT CCTCGATCCTTCCCACCCATGCTGTTCATTGACCAGTGACATGCGACAAGACTGCATCCAGGAGGCTAGC ATGGCTGTTCTTGCATTGCGACTACCCATGATTCAGGTCAAGCCACTGGTTGAGTTTTTCAAAGAGTTGC CATCTGATACGCGTTTTGATGCCAATCACCAGGAAGACATTTGCCAGGCTGCAGTAGATTTCCAAAGCTT ATACGCTGATCTTGAAAACGGCCTCGACGTAGAACTGAACCAGCCTTCAAGAATCCAGACTGAATTACAG GAGCTTCAGGACCTTCTAGCAGAAGAACTGACAGAAGAGGAAGAGGAACAATTGGAACAACTTGCCGAGC AGAATGAAGAACAGTTAGAATTGTTAGCTGAGCAAGAAGAGGAACAGGCAGAATTGCTGGCTGAGCAAGA AGAGGAGCGTCTTGAAATACTTGAGGAACAGGCTCAACAGCTAGCAGAGCAGAATCAACAGAACGAAGAA GAGGAGGAAGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGACAATCGCCGACGGAAACGAAGAAAAGCTA CTAGGTTCCGGAGACCTACTGCTAACAAGGTGCGTGCGGCTGCGGGCCGCAGTATCTATGAGGTCGACAG TTTAGTTCATTGTTGCCAGGAAAATTTTGTGGCGGAAAGAAATTCTTGCATGACAAACTTTTGGGTGCAA CTGTTAGATGAAGCATGTGCAGCCCTTCCTTACTTACCTGATTCTTCTTCTGCTACGTCTACTGGCCTGG AATATGCTTCAGAACTTGCACAAGCCGATAATAATGTGCTCGCCCCAGCTCCATTGACGTTTGGAGGACG CGGAGACATTCGAACCTCTAAAGCAGTAAAGTCAATCTCAGAATCTACAGTCGTTTCGAATTATGATGAA GACAACTTCCGATCATGCTGTGCTCTCTTTGGGGAAGCCCAACTGAAATGCTTCCAAATGCACTATAGTC CTAATGCTCCTAGCTCACAAATGGAAAGTGAGGGATCTGCGAATCCGTCAACGATAGGCAGTGTGTCCGA GGGATATGTATCTGAAAGCCAGGGGCAAGAAAGTGAGAGATCTGAAAGTGAAGGTTCTGAAGGGGAGGAT TCCGAAGAGACAGAGGGCGCTGAAGAACCACAGGAGCAAATGGAAAGTGAAGGGGAAGATCTGGAAGAGT CAGAGGGCGCTGAAGAACTACAGGAGCAAATGGACAGTGAAGGACAAGAACCCGAGTCAGAGGAAGATGT CGATTCTGGAGAAATAACTAATGGATCGGACATGAACATGCCAGGACCGGGATCATCTGACGGAGGTGTT CCACTAGGACTAACGGAGGTCGATGAACAAACATCCGATGGAGAGGAGCCCGAGGAACCAGAAGAGCCAG AAGGAGAACAAGGACCACACGAACAGATGGAGAGCGAGGGAGAAGGAAATGAATCTGAAGAAGAGGAGGT TGAGGAACCCCAGGAAGTGATAGAAAGTGAAGGACAACAGTCTGAATCAGAAGAACCAGAATTTGAAGGA GAAGAACCGGAAGAATCAGAAGGAGAACAAGAACCACAGGACCAGATGGAAAGTGAAGGACAAGAACCCG AGTCAGAGGAAGATGTCGATTCTGGAGAAGTAACTGACGGATCGGACATGAACATGCCAGGACAGGGATC GTCTGACGGAGCAGGAGGTGTTCCACTAGGACTAGTGGAAGTCAAAACATCCAACCAAGAGGGGTCTGAA GTACAAGAAGAATCGCAGGACCCACAGGAACAAATGGAAGGTGAAGGTCAAGGAAGTGAATCGGAGGGAG AAGAACCAGAAGAACCAGAAGAAGGAGAAGAAGGAGAAGGAGGAGAAGAAGGACCACAAAAACAGGTGGA GAGCGAAGGAGAAGAAAATGAATCTGAAGAAGAGGAGGTGGAGGAACCCCAGGGAGTGATCGAAAGTGAA GGACAACAGTCTGAATCAGAAGACCCAGAATTTGAAGGAGAAGAACCGGAAGAATCAGAAGGAGAACAAG AACCGCAAGAACAGATGGAAAGCGGAGGAGAAGAAAATGAATCTGAAGGAGAGGAGGTGGAGGAACCCCA GGGAGTGATGGAAAGTGAAGGACAACAGTCTGATTCAGAAGACCCAGAATTTGAAGGAGAAGAACCGGAA GACTCAGATGGAGAACAAGAACCGCAAGAACAGATGGAAAGCGGAGGAGAAGAAAGCGATTCTGAAGGAG AAGATGTGGAAGAATCGGAAGGGGCACAGGAACTGCAAGAACAGAGTGAAAGTGAAGGACAAGAATCTGA ATCGGAGGGCGAAGAGCCAGAACCTCAGGAACAGCAAGAGAGTACCGTCCAAGAAATAGAAGAAGAAGAA GAAGAAGAGGAGGAGGAGGAAACTGGAGGATGGTATGTATGGTGGTCAGGTGGTAAAAAAACCCAAAAGA AAGAGCAATTAGTTGCGGAAGCAGAGGAAGAGGATGAAGATCGGAGAAAGAGAAGGGATGTTTGGAGTTG GATGCTGACTGATGCAGAAGAATCAGAAGGGTCGGAAGGAACGGAATCTGATAATGAACCTCAAACACAA GAACAACATAACGGTGAAGAGGAAGAGGAGGAGGGGGATGAGGAGAAAGATGATGATTCCAGGAGAAAGA GAGATATATGGAGTGCCATGGAGCTTCTGAATGACATCGAAGAAAAGCAAAATTACAAGCGAAAGCACGC TAAACCAGTTAACATTCATCGAGGACCATCAATGCACAACCATCAAGGTGGACCAAAAAGGCAACGTCCC GGAAGAATATTCGGAAAGATGTCCCTTCTAAAACTCTTGTTCAAGAATGAGATGATGGAGAGTCTTTGTC CGGCTGTTGAGGCTGCGGATACTATCAAAAGCGTTATTGGTAGCTTCTTCGACTTGGCTGAGCTAGAGCA AGCTCCTAAAAGGAAGCACCATACTCGCGGAAATGATGTCATGCTTCTGCAGCTTAAGGAATGCTGCGCC CTCAATATGACGGATGAGAAAATAGAATGCATCGCTAACATGACTCAAAACATCGTAGATGGGATATGCG ATATTCAGGATGCCGGGTTTAGACCACGCCCATCATACTTGACTAAAGGGGAAAGCTGGGGCAAGAAAAA ATTCCTCTCCGGATGCTGCAATGAGACCGGCGTTGAACGATATTCATGCGCTAGGGAGTACCTAGTGCCT GCAAGTGAAATCGAGGACATGGTCGAGTCAGGCCAAAAAGACCCGGTTGATTTATTCTACGCTGTCGGAA AAGCAGTCGGCAAGTTGCTGACCCTGACAGACCAGGATGCTGAAGACCATACCGAGGTCGTCGATCAGGA AACAACTACGACCACGACCACGACTACGACGCCCGATGAGATGTCTCAATGGACTAGCATGCGAGGCAAT ATTGTTACGAAGATGTGCTGCCAAGTGGGTAGCTTGACGGGCGCCCTCTTGGGTGAGAATGGAGGAGTTA CTTGTGACGGTAGCGCCAAAGTTTACTCCAAATTCGTAGAAGGGTTCATGAGAAACGAATGCTTCACCGC CTATACCAAGTGCTGTAGCCGGCCTGCCGAATAAAATGATAGTGGAACAGTCATTGAAGAAAGAAAGAAA ATCGAATACAATCAAATTAACTTTTGTTGATTTGTCCCACTCACTATTTCTTCAGTATAATCGTCGCAGG GAATTCATTAACAAAGAAAAAAAAATAGTCAATGTAGAATGCTAAAGACGGTGATTTTTGAAAAGGCAAT CAGAACTTTGCAAATGTTACGGCACCCCTGTATTCAACGTGATGCATTTTAGCGTCCTTGAAGACGTGCT ACTGTGACGTCACATTTAAATAGAAATATTGCTTTAAATCTGACATGAAGTTTATAAAAAGAGAATGAAT TTCGTTTTGTTATCTTCAATCCTCTATTTTTCTTTGCCCTCTGTGGTCAGCTAAATGTTTATATACGAAT GGTTTCCACATACAACCATACAATGAACCGTCACAGTGAATTTCTTCTTAATGATCAAGCTTTGAAAAAA ACATATCAATATGCACCAAACATATCTTAATACTCATGTTAATCATATATAATCATGTTGCTTACAATTA TATTCTGATATTGTTTTTTGTGTTTGTAATTGTTTGCTTGTTGTTGTTTTAATGATGTGTGCATGACAAG TGTTCATTAGGGGCTCATTTTGTACCAATTATTTCGAACCCCTGTATGCGTTTGTAATTGAATTGTATAT TATTGTTCCCGTTTGTATGGAATTGATTTAAAATGTCACTTGATCTTTTGATTAAAATTCAGAATCGAAA AGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds