Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030980463.1 PREDICTED: Strongylocentrotus purpuratus pericentriolar material 1 protein-like (LOC115922169), transcript variant X1, mRNA TTCCCTAGACGAGCACAAAATGGCTGCCTAATCTAAACTGTGTGTAACTCAGTGAGAGTGCCCGTAAAGC TATACTTTGCAGCTCCTGAGACCATAACAGAGGCATTTCCAGCTGAGAAACACCTTCAGCTGTCAAGAAG CATGGCAGCCAGCAAGGCTCCTCAGCTTCATCGGAGTGTGATGTCTGAGCCTAGGGGCAATGCTGTACCC AGGTACAACTTTACCCAGCCCATGGATGACTTCCTTTTCAACTTGATAGGTGGTGAGAAGGAGGAGAGCA AGCCAAATAATTACTACAATTGGAAACCAAGTTCCACATTTGCTGAGCAACCTTCAACTGTTGTTCGTAG TAAAAAGTCCAAGAACAAGGAGAGGGAACAAAACATCTCTGTGAAGGCTGATACGCAAGGTGCTGCTATG ATGAGTAATGGTCCCTCCCGCCGTCGCACACCAGCAACCTACCCAAGAACACAACATGTTAGTTCCCTTT TAGACAGAGAGGAGCTGGAGAATCTCCGTCAACAGCTGACTTACAGTGATGTTGATGATCAAAGCACAGA CAGCCAAGCTTTGGGTTCAGTTAGCATTGCTAATAGAGTGAACAACATGAGACTAGGTGATGATGTAGCA TCCATCGAAAGTGGCACCAGAAGACCTCCCTCTTTACTGGATACTATCTTCGTCAATGAGAAGCCTGATC GAAACAAGATTGTAGCCAGACTCATGCAAATAAGGGATTATGTGAAACAGGCCAATGCCATGATGTCTAC CCTACAGAACTCTATAGAGAGTCCAGAGAAGGACGACCAGGTGGGCAAACTAAGCCGGCTCCAGGAACAC CTCCAGGAGCAAGAAAGAGGTTACTTGGCTCTGCTGGAGCGTATGCTGGCTGAGGAGCTCAGCTTAGCTG GCTCTATCTCTGGGATGGAGTCATCGGTCACAAGTAATGATCTCAATGGCTTGGATGCAGCTGTTGAAGG CAGGAGCAGTCAGAACTCTGGAGAATCCTTTGCAACATCTGTAGCAGAATCAGCATCAATCAACCTAGAT GCACGTTCAGATATTTCAGAGGCTACTACCGAGGGTACTTTCACAGCTCGCACCCGTCCCAAAATTGAAA GCCACCTTGGCAATCACTCATGCGCAAGCGACAACGATATCAGCGATTCCGAGCTGGATGACATTCGGTC AGTCAGTAGCTACGCCAGTGGTTCCTTTGGCTTGGACACCCAAGAGCTTCATGAACAGTACAGCTCCATG CTACAGAAGTACCAGGATGGGGGTGAAGAAAACCTGAGCGCTGCCATGGAAAGGATTACCCTATCTAGGA ATGAAGGACAGGATGAGAGCACATCTTCTCAAATGTCTTCCAATTCTTCATACAGCTTTCAGGAGGGCCA ACAGACAAAGCAAAATGTCTCTGAGCAGATAGAGACCCTCGAAGGATTAAGGAAGCAACATGATCTATTA CGGAAGATGCTTAAACAGCAGGAAGAGCTGAGAACACTTCAGAACAGACAAACAGCATTGATGACCTTAC AAACTCAGATTGAGAGCAGATTGACAAACTCAGAGCAGGAAAGAGCAGAAGAAACAGGTTCTGTCACTAG TACTCAGGCAACTACAACGACTGCCGGCACCTCTGTCACTGAGGACACCGAGCCGCTAATGACAACAGCT GGTCGGTTTGCAACAGGTGTTCCTCTGACGGCCGAAGACCTTCAGGAGAGACGTAGAACTCTGATGCGTA TGCTAGCTGAACAGAGTGATACAAGATCAGGAGAGATCCAGCAGGCTAGGGCTCTCGACTGGATGGAACA GGCAGAGGAGGAGGTTAGTCCACCATTGGTATCATCAGAGCATGCAGAATTGAGAGATAAACTAGAAGCT TTACAGCAGAAGAAGAGACAGATGGATGATCTTCTTATACAGCTCCATGCTCTTCATCCTGATATGGCTA ATATGGTCGGTGATACATCAAGCGTAGCATCTACCACTTCAAATGCCAATGAATACAGCGGTTTGATGGT GCCGTGTGAAGAACCTAACGAGTCATTGGATGAAAATGAAGCCACTCTTACCAATGGAACAGAAAGCATC AGAAAATTGCACGATGTAAGGGAGAGGCTTACAGAGCTCCGTGATCTAGTACAGCAATACCAGGATACAA GTCAGGTATTAGGTGACCAGGATGAAGATTCGCAACGCAAACAGCAAATGCAGCAGTTGGGACTAGGGGC CAATTATGAGGATCCTGTTCTTATGAGCAATCTAAGGAGATTAGAGAGAGGTGAACCTGTAGGAAGACCT GTCCAGATGAGGCCAAATCATATGTCATATGGTGGAGATAGTGCCTATGTACAGGTTGGTTCAGGTCAGA CCACCACTACAGTGACGGAGACCGAGACTGAGACGGAGACAGAGACGGAGAGTAACCACAGCTCCATACT AGCTGCATGGGGTGATGATCCAGAAATCAAAGAGAAAGTCAGGAAACTTCAAGAGGCAAAGCATAAGTTA CGCCAACTCCAGTCACTTGTGGCCATGGTACAACAGACCCCTGAAGTGGCTTCAGCCTTGCCCGATGACC TGGCTGAGCTGGCTGCAGGCCTTACAGCTGGCCTTACTGCAGACTACTCAGAATCAAACAATGAAGACGA CGATGAAGATGAGGAAGACGACGAGGACGAGGAGGACGAAACGGAAGAGGGGGATGAAACGGTGGAGGAG AGTGGGAGTGAACTTCCTATGGCAGGTGCTACAGGCGACCACAGGATGCCAAATAGAGATGAACAGATTC CTGAAGAGTTTGTCAGGGAAACAAGGGAAGCCTATTATGAGGCTAAGATGAATCAGCAGAGACGGGAGCT TCAGAATCTAATGTCTGAGAGACATCGACTCTTGGGTGTCCAACAGCAGCTCAAGGAACTCAATGAGAAT CTCCCTCCTGTCAGAAAGCAACCTGCCAAACCTGGGGTGACATCGGTAAACATCATCCCACCAACTAAGA GAGATGCATCAACTAATGTCCAATCTGTGGCTACGCCCAGTCGTGAGGAAGTCTACTCTGAGATGAGGAG AAATCGAGCTCTTCAAGATGAACTGAGAGAGAAGAAGAGTGAGCTCTCTGACCTACTACACATTGTCAAA ATGAACAGAGAGAGGTTACGTGATGGATCTGAGTATCCTCTTCAGACAGACTTAGCCGGGTATGACAATG ATTTATTCAGGGAATTATTGCTTGATGCCGGCAGATTGAGTATGCGTAGCGCTGACATCACAGCAGCTGC CACATGGGGTGGATCAACGCAGGTGAGCGAGGATGAAGGATTAGAAGATGGATATCCTAGCGATGGCATC TTACAGGTGGAGGAAGAGGAGGAGGAGCAGAGTATTGATACCTCAGATACGTACACCATTGAGTCGGGCG ATAAGCCCCCCAGCAGGAGAAGAAAAGCCCTACCTTACCCAGGAGTGAAGAGAGTGACCATGGAAGATGA TGGTGAGACATCATCTATGGATGCAGCTAGGCATGGTATTAGATATCCTAAGCACATCAACTCAGCTTTA GATAGGCAGAGTCATCTCAGGCAGGAGAACATCCGTTCAGCCGAGGAGCTTGTGTCTGATGGCTATGAAG ATCCCTCTATGGATGACCCTACTGTCCAGGCTCTACAAGGTCACATCGGGCAGCTGCAGAGACAGCTATC TAACAGCATGGGAATGTGTCAGTCACTTATCTCAGATCAACAATCAATGAGCAACCTACTGTCAGGATCT CTTAATGCTGGTCATGGTGGTTTACAGCCCACCCCCACACCTCCCAACCCCTTTGTTCCTCCTGGAGAAG GTCACCTAGATGACCTTGTCCAGAACTACGATCTTCGCATGCAGCACCAGCAACTAATGCTAAACTTGAA CAGTGCCTACACCCAGCTCTATCAGCAGCAGAATCAGATCCAGGGACTGCGTAGCCAGCTGGAGGAGAGA CACTCAGAAGCTTCCTTTGATGTAGGAAGAGGAGGCCAAGGCGGCATGGCATCTACCAATACCAATAGCA ATAACAATGCCCCACCTATGTACAGGAATCAAGCCAGACCCATGGGCATGGGATACCCAGGTCAGGCCCC ATCCTTTGGGAGATCCCCTGGTATGGGACCTGAAGCAATGTACGGTCCTCCTCCATATAATCGTGGCATG CCATTCAACGTGAATCCTACATTCCCACCTGGCTTTGCTCAACCGAGTCCAGGCAACTACCCCTCACCCT ATGCAAACCCCTACGCCTCCAACAACCTGAATGAAGGTGGCTCTGCTGGTCAAAGGGACACCTACAACCC CTATGCCCGCCAGCCCCCTCACCCTCAGCAGAGGTACGGTGGTAATGCAGCCTCCTACCACGTCCCACCC AACACAGCTCAAGTCAGCAACGATGATGATGAGTTTGAAACTGCCTACCTGAATGGTGCTATAAGCAGCA AGCAGATGAAGATGATGGGAGGGTACACTCTAGACAGTGGGATTGGAGACATCAATGATCTTTTGGCAAG GGAACCCACAGAGTCGAGGGAAGAGATTGCTGTACCTCCACTAGATATTACCAGCCTTCTTAAAAGAACA GACCAGCAGAGGAGACTTCGAGATGAGTTGGGTAGTCAGAGATCAAATACATCATCCAACAGAAGAGGCA AGCACCCAATGCCAAGCAGTGCATCCCAAGCCAGAGCACAGCTATCAAGCCAGTCCACCCAGCCCAGCGC CCGTCTGGCCAAGCTTCTAGGACCCAAGATGGGTACCGGTCTGAGTTCCTCCATCAGTGGGACTGCCTTC CTGGACACAGCGAGCATTACAAGCACAGTGTCCATGTCTAGTCTACCTGGTGACAGTGATAGGGGTAACA ATGGAGCAAAGTCAAAGGGCAAAGGGCAACAGAAGCGGCAGCAACAGATACAGCAAGACACTGATCGATC AATTATGTCACAGACAAGTGAACTTGAGTCTGATGCTGGGAGTGAGTTCTCTCTCTTTGAAGCTCTACGT GAGTCCATCTACTCAGAAGTGGCATCACTCATCTCACAGAACGAGACGAGACCGCACTTCCTCATTGAGC TGTTCCGTGAGCTTCAGATGCTCAATACAGACTACCTCAGACAGAGGGCGCTTTACGCCCTGCAAGACCT TGTCTCCAAGTACCTCACTGATGACAACAACACAAACGCTTCAGCATCCGAGGCCCCCACGCTACCATCA GAGAGGCCAATGCCAGCATGGATGAACTTTGCAGGATCGGAGCAAACTCCAAGTGAGAGCTTTATTACAT CAGATGAAGAAGAAATCAAGGCGCGTCTGTTTGGTGCTAATCTGCAGAAGCCCCACGAGTCGTCCTATGC CTTACTGGAAGATGATCAGTATGATTACATTGAGAATGTAGACTCTGCTAGTACACTCTCCACACCTCCA TCATTAGGACGAGCAGAGTTTGGCTTTGCCAATGAAGACCTGGGGAACACTGTCATTCATCTTGATAAGG CACTCAAGCGGATGAGAGAATACGAGAGGATGAAGGCAGAGGTTGAGGCAGCTTCAGGAATCAGCTCAAT AGATAATACCAAGGAAGGAGGTGCTATGTCTGCCTCGGATATGACTAGTAATAGCTCAGCTCAAGACATG GGTAGTGAAAGCTCCTTCTCTGACCTGCCGTACCCTCGCATTGACACCCGTCAGCTGGACCTGCAGATCA AAGGCATCATGCAGGAGGTTATTCCCTATCTCAAGGAACACATGGACGATGTGTGCTCTCCACAGCTACT GGCCTACATCAGACGTCTGGTGCTAGGTCTGGCAAGGCAAAAGGATGAAAGCAGGGAGTTTGTCCGCTTC TTCAACAGGCAGTTGGGCTCCATCCTGGAAGACTCTCTGGCTAAGTTCTCTGGTAGAAAGATGCGTGAGT GTGGAGAGGACTTGCTGGTAGATATCTCTGAGATCCTCTTCAATGAGCTAGCTTTCTTCAGGCTTATGCA GGACCTTGATACAGCTGGTAACAAACTCAAACAAGAAGCAGCCAAACGAGATGAAGATGATGACGACGAT GATGAGGAGGAGGATGAAGATGATGATGATGAGGATGAGGAGGAGCAAACAGAAACAGGGACTGAGACTG GTACAGCTCAAGATCAAGCTACTGGAGAAGGAGAAAGCAGTTCTGATGACGAGTCTTCATCCGATGAAGA AGATACTGTGCAGCAGCAGAGTCATCCAGCTGGCAGGCAGCAGCAGCAGCAGGGTGGTGATGGGTCTGGT GGTGGAGGAGCTATGATGGAAGATGAACTAGAGAGTGCTATGGCAGTAGCTTCTAGGTTTGAAGAGGAAG AACTAGGAAATACGAGAGATGATATGTTTTCTACACAAGTGGACATCAGTGATAGAGAAGAAGACAGTGA GCCACAGGGTGTGGATCATTTACAGATTGAGCTGTCCATGAGTGAATCAAAAGGAGTCACATACATTGGT AGTGGTGAAGAGGAAGATGACCCTGACAGTCTAGGAGAAGCTGTGGAAGAGACAATCACAAGCATTGGAG CTGCTAATGCTGATGGAGAAATTGATAGTGTGGATGATACAACGATGAGCACAGAGATCCCAGTGGAATC AGATGCTAGTCAGAAGGAGAACATCTCTAGACAGGAGAGTCTGGAGAAGGATCCAGCTCCGGCTCCAGTC CCTGAGTCCAATGAGACTAATGAGACTCCAGAGTCCCAGGAGACCCAGGAGACTCCAGAGTCCAGTGAGA CTCCAGAGGCTACCACCCCACAGGCCACGGTGGGTGAGAACAACAATGAGGAACTCACTGTGGATGATCT GCCTCCAAAGCTCACTGTCATTACACAGAATTCTCTTGACAACCAGATGATGAAGGAGCAGACCAATACA GATGGAGTGCAGGCAGTCCTGGAGACTATGGTAGAAGGAGAAGCTCAGCTGGCTGGAGACCCTATGGCCT TGAGCGCTCCTGAAGGAGCCCCGGTGGAGAACGGTATCATTGGAGGCACCCCTGGAGAGATAGGATCAGA GTGAACTTGAGATGAAACTGAAGAAATGAAATGCCTTGACAAGGCTGTGCTGCAAGCCATGCTGTAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
