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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
Genomes
S. purpuratus (
Purple sea urchin
) 5.0
P. miniata (
Bat star
) 3.0
L. variegatus (
Green sea urchin
) 3.0
A. planci (
Crown-of-thorns
) 1.0
A. japonica (
Feather star
) 1.0
A. rubens (
Sugar star
) 1.3
L. pictus (
Painted urchin
) 2.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Acanthaster planci 1.0 Genome
Patiria miniata 3.0 Genome
Lytechinus variegatus 3.0 Genome
Anneissia japonica 1.0 Genome
Asterias rubens 1.3 Genome
Lytechinus pictus 2.1 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>XM_030984321.1 PREDICTED: Strongylocentrotus purpuratus DNA excision repair protein ERCC-6 (LOC576112), transcript variant X2, mRNA GTTGCGTAATTGACACACGGATGGTGAAACCAAGGCCGAAGACAGCAAAGACCGACATGATCGTGGAAAT TTCTCCTTTTTTGCTTATTTAGGCCACAGCTCTTCTAGAAATGGATGGGAGCAGTACTAGTAGCTGTGTT GGAGGTATCCTGGAAAGGGATGAAGGAGAAGGATCCTCACAGGGTATGGATATGGAAGGCTCTACAAATG ACTACAATGAACACACAGCAGATGTGGAAATTAAGGAGGAAGAAATGGAGGAGAGAAAAGATGGCAAAAA ATCGTCCAAGGGGAGCGTCTTCCACATCGACACCAGCCTCATCCAGGCCGTGCCTGCCAAGGAGCAAGCC AGTGAACTCCAGGATCTAGGGATCAGCGTGTTTGACCAGGAGGAGTTTGAACAGGGAGTCTTACAGCAGG TGGACCAAGCCATTAATGAGGAGGAGGCAAAGCTCTCCAGGCTGAGGGACGAGAAGGAGTTAAAAGCTGT GCTGGATGATATAAAGGTGTGTCGTTCCGAGTTTCATCACCTGCAGAAAGTAGCGGCCAGCATCCGTGTG CCTTCTGTTCCCTCTATGGTCAGCAGAGAGCTGGAGAAGAAACTGCTATCTGTCAGAACAAAGAAAGAAA ACAAAGCTAAGCAGTTGAAGAAACTCAGATCTAGACACAGAGTTCTTTCTGCTAAACTCAGTGGCAAAAG TGATGCTGCTCATGGAGAAGATCATTCTGATGAAGGAGAAAATGGTGATGGCAGCTCTTCAACCTATGAG AGACTGCTCCACGATCGAGGTGGATCAGATGATGCTCCAGGACCCAGCAAGGGCAAGGAGACAGAGCATG AGCGTCTCATCCGGCTCGGTGAGATGACCCCTTTCGGCACCTTCCTGACCGTGAAGGAGCAGGAGAAACC CAAACCACCTAAGCCCAGGTCCCTGGTGGTCACTGACTTTGAGAAGTTCCTCGGTGGAAAGGACATGGAG ATGTACAAGAAGCATAAGGTGGCGTCCAAATGGAAGGGGACTAAGAAAGCCAAGGGGAGTGCCTCGCAGA GTGATCAAGGCAGCATCCTCTTTAGTCTGCTGACACCAAAGCCTGAACCATCTCCTGGACCAAAGGTCAA AGGTCGCAAACAGGATACCACAAAGGCCTCAACCTCCAGAGACTCCTCATCATCGCAAGGGCAGAGGAAA CCTGAGAGGGAACGGATGGAGTTTGAACCAAAACATCGCAAGAAGGTCAAAGACAAGTGGGACAATCCGT CGCTGAAGGAGAAGAGACAGAGATCGAAGATGAAGAACTTGACAGAGGATTGGGACAGTGATAACGAGGG GTACATGGAAGATTCCGATGATGGTGGTGATGGGGAGTACCATCCTGATTCAGACCAAGAAGCAGCTTTT GATGAGGACGCATACTCTGATGATGAACCAGTCATAGGAAGGAGGTTTGCCCGTCCTGGGAAGAGGAAAC TGGCTGAGGAGATAGCCGATGGGACCATTACTAACTTGAAGGATCTTCAAAGGAAAAGTGGGGCAAGAGC AAGAAAGGCACAAGAATCGAAGATTAGAAGGGCGAAGGATGACTCCACTCAGGAGAAGTTCCGTAAAAGA TTGAAAGAAGAGAGGAAGAAGGAACTGATGAAGAAACGGGCCAGGCAGATGGAGCGGAGGAGAGGAGGGG AAGATGAGGAAGATGAGGACGATGATTCAGAGGCTGAAGATTCAGAAGAAGATGATGTCGATCTGGACGG AGGTTTCAAGATACCCTCCAAGATCTGGAAGAAGTTATACAGATACCAGAAGATTGGTGTTAAATGGCTT TGGGAGTTGCATCGTCAGAAGGCTGGTGGCATCCTAGGAGATGAGATGGGTCTGGGTAAGACCATTGAGA TGATTGCTTTCCTAGCGGGACTCAGGACCAGTGCACTACCGAGCAAAGGCTTCAGCTACAGGGGACTAGG TCCTGTGTTGATAGTGTGCCCTGCAACAGTTCTTCACCAATGGCTGAAGGAGTTCCACACCTGGTACCCC GAGATAAGAGTGGCCATCCTCCACGAGTCCGGATCACACTCTGGCAAAAGGGAATCTCTTGTCCGGGACA TGGCCAGCTCTCATGGTGTCCTCATCACATCCTTCTCCACCGTCCGGCTCCGTCAGGAGATGCTCCTACG CTACAACTGGCACTATGTGATCCTTGACGAGGGCCACAAGATCCGTAACCCTGATGCCGAGGTCACACTG GCTTGCAAACAGTTCCGGACTCCTCATCGCCTTATCCTGACCGGGTCACCCATGCAGAACAACCTGAGGG AGCTGTGGTCTCTGATCGACTTTGTCTTCCCCGGCAAGCTAGGGACACTCCCTGTCTTCATGCAACAGTT CTCAGTACCTATTGTCCAAGGAGGCTATGCCAATGCTTCCAAAGTTCAGGTCCAGACAGCGTACAAGTGT GCATGCATCCTGAGAGACTCTGTCAGCCCCTACCTGCTGCGCCGCCTTAAGGCCGACGTGAAGCAGGCCC TTCAGCTGCCATCCAAGAACGAGCAGGTCCTGTTCTGCCACCTGACGGAGGAACAGACCCAGGTCTATGA GGAGTACCTGGCCTCCAAGGAATGCAATCTCATCTTGAGAGGAGAATACAAGGTCTTTGCTGGACTCATC ACCCTGCGGAAGATCTGCAACCACCCGGACCTGGTGTCGGGCGGACCTAGGATCTTCTCCCACCAGAACC TTTCTGACGAAGACCTGACGGAAGAGCAACGGTACGGGTACTACAAGCGAGCAGGCAAGATGATCGTGGT GGAGTCACTCCTCAAGCTGTGGAAGGAACAGAACCACAGGGTGCTTCTCTTCTCACAGAGCAAACAGATG CTGGACATCATGGAGGACTTTGTGAAAGACCGCTACTCTTACATGAGAATGGATGGGACTACAACAATCT CATCAAGACAACCGCTCATCACCAAGTTCAACTCAGATCCCCGAATCTTCCTGTTCCTGCTGACGACCCG CGTCGGGGGTCTGGGAGTGAACCTGACGGGGGCCAACAGGGTGATAATCTACGACCCTGACTGGAACCCG AGCACCGACACCCAAGCCAGGGAGAGGTCATGGAGGATTGGCCAGACCAAACAGGTCACCATCTACAGGT TGCTCACCGCTGGTTCCATTGAAGAGAAGATCTACCACAGGCAAATCTTCAAGACGTTCCTGACCAACCG AGTCCTCAAGGACCCCCGTCAGCGTCGCTTCTTCAAGTCCAATGACCTCTTTGAGCTCTTCACCCTGGGG TCATCAGACAAGGGCAGGAGCACCGAGACCAGCGCCATCTTTGCCGGCACGAACTCTGAGGTACGACCCA ATCAGAGTTCCTACGAGTCGAAGGCCACCAAGGAGCCGATGATGAAGATGGGCAAGAAGAAGGGTGAGGC CCTGGAGAAGGCGGAGAGGCGAAAGAAGCAGGCGGAGGTCATCCAGAGGGAGCTGCTGCTCAAGAAGAAG ATGGAGGCCGACAAGAAGAGGATGAAAGTGGAGTTGGAGGAGGAGGACAATGGCATTGCTGCTGCATCCA GGGTGGGTCATGTCCATTCTGCAGCCTGTCAAGGAAAGTGTGTGATATCACCCAAGAGACTTGGAGACTC TGGTGGTGTGCAGCTCGGGGAGGTTGGGTCCTCAAGTCGGCATGGTCACATGTCAACATCAGCATCATCT TCCACACACCCATCATCTAAATCTCCATCGTCATCATCAACCCAAGTCAATGCCATCTCATCGTCTAGCT CGGGCAAGAAGGCGAAAAAGAAGAAGAGGAGAGATGCAAAGCTTGATGGTCTTAAAATCCCCCATCTTGC CAAGACCAAAGCCTATGCACCCAGAGCGGAAGAGGAGGATGAGACCACCAAGAATGCAGACGAGGACAAC TATGTCTTGCAGAAGCTCTTCAAGAAAAGTGGTGTTCACAGTGCTCTTCAGCATGACAACATTATGCAGT CATCCAACCCAGACTTCGTCTTGGTGGAGAACGAGGCAGAGAGAGTCGCTAAGGAAGCAGCCAGCGCGGT TCGCCAGTCCAGGAGGCGTTGCTTTGGTGCCAGCTCCGGTATCCCCACCTGGACTGGAGCAGCGGGGGGT TCCTCAGGGAGCAAGCTTCGTTTTGGAGGCAAGAGCAACAGCAGACTTGTAGACAACTCAGAGAGGTCAG AGTCACCCAAACCGAACGGAACACCAATGAAGAAGAAATTGTTTGGCAAGAAGAAGATGTTCAATGGTGA CATGTCCACAGCGACGACGATGAACGAGGATGCAGAGCAAACCAACGACATGCCCTCTTCCAACAGCCTT CTCAACAGGATGCGCGCCAGGAACCACCTCCAGAAAGACGAGGACAACCCTTCCTCATCCGACGATGAGG ACAGGCAGAGGTCGGTGTCGACGGCAGGAACGGAACACGATGGCGTCATGAAGGAGATGGTGGAGTTTAT CGGCAATCACTCCGAGGTCCCGGGGCAGGCAACGACCGATGAGCTGCTGAAGGCATTCGCGAGCAAGATT GAGAAGTCAAATTCGGCGATGTTCCGGTCGATGCTGCGTCAGGTCTGCACATTCCACAGAACTCAGAAAA AGGAAGGATTCTGGAGACTCAAAGCAGAATTTCTGTAAGAACCTGGAGGATAAATTTTGAAATACGCAAG TGAAATGTAGACTTCGGGTTCAACATTGTTCTAGTCCATGCTTTATCATGTCTGCACCTTCTATAGGACA CCGACAAAGGTAGGATTCTGGAGACTGGAGAATTTCTCTAGAAACGTGATTAATGAATTTGAATTTGTCA GCAAGATGAAGAAGTCAAACTCAGCATTGTTTTGGTCGATGCATCATCAGATGTCCACTATTTTGTAGGG GACAAACAAATTAGGGATTCTGGAGTCTCATGGCAGAATTTCAAAAAATGTGGATTTGCAAGAGAGGTGG AGAAGTCGAGTATGGCATTGTTCTGCTACAATGTATATGCTTCATTAGTTCTTTACTTGCAACAGTGGCC AAAAGAAAGAGCGATTTCTGAGACTGGGAGCAATATTTTGTGAGACACCTTGTGGAAGATATTCTGTTCT TCTGATTGAATTGTGAAGTGGAATGAATGTCAACTTTGAGTGGGTCAAGTAACTTAGAAATAATGGATTC CTCGCCGAATACAAGTCAACATTCAGTCATGGATTTTCCTTGTCAAATGAAACTCTAAATACTGTGAATT TATTGAATTTCAAAGGTATATTGGTTATGAAAAGGAGTACTCGAGTATCTTCCATGTTTTGCAAGGAAAA TATGTCTTTTGAGAATCTGTTTGGGCATAGTTGTATGGCTATACACAATCAATTGGATATGAGAAAGTTT AATACGTGTAATGGTAATTGACCCAATCTAATGCAATTTTTCTGCACATTTGCAATTTAGGCAGGGGTAC AGAAGGGGAAACAAATTGTGTTGTGTACAATTTTTTTAAGGCTTCTAGTTTTACAGTACATTCAGATTTG CCTGAAGAATTCTACTCTTATTTCAAAGAAAAATTTCATATTGTATTCATGCATTCAACTAAAAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
