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Echinobase Accession
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BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
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L. variegatus
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
FASTA query sequence
>LOC110977186 TGACACAAAATCTCAACATAACTCACGTGCATCGTTCTTATTTAAATTACCAATGATCGCATTCTTACTTTCGTTGGTGAGTTTGTTGTGTGGATGCCTTCATGTCGCAGGAGTGTATGCCTGGATTTTGCCTGTTTCCGAGCCAATTTCTTCTCAGATTTGGACAGTTTCCCCTCCGGCGCATTTCTCCCGTAAGTTACAGAAGTGCCGTCTGCCATAGTTGTATCTGTGGCCTCTTGAGGGCGCTGTAGTTGTCTGCCATTCTTGAGGCTTGCTGCTGTCTGCTTCATCATTTTCATATGCTTGATTATTACATTTTATGTATTCAGGTATGTAGAGATAGTTTGACTGAGGTATTCTTTTGGAAAGAGCAGGGGATTGGAGTAGGTCATAGATATATCATATTGTTGTATCCTATTACAGTTTTGGACTGCTTACAATTATACAAGTTTACTGAGTCTGGTAGTCCAACATTTTGGATAAAAATTAAAATTAATATTAGAGCGAGATGAATAGGCCCTAGACCGTATACACAGGGGACCCAATTTCAGTCAGGTCCCCCAACGTAGTGTGTTCATTTGAAAATGTTTAATTTAAAGAACCAGATTCTATTTTACAATTTCATTCTAACCCCCAAAATCACCTGGTACCGTCCCACTGCACTGGGTTTCAAATGTACAATACGTTCAGGAATACGACTGAAATTGGGTACCCAGTGAAGACGGTCTATTGGAGTTTATTTCAGCTCACTTTTGGATGTCTGTCTTTTTATCTTCAATAATTGACTTTCATTTACATCGTGACAAAAGGCAACAGAATGCAACATTCTTCAGATAAATGCTTCCACAGCTCAGCCCTAAAATTTCCAACAATTTCCACCAACAATTTTGAGACCAAAGTTGTTTAGGGGAAGGAGCATGGTGGGAAGAAAAGATACATCAGTGTCTGATTGGTGCTATACAAATGATCTACTGTTTTTCAGTGAAATATATCAACAAGAATATCAGAGTGTGGTCAGATGTCAGAGGCGAATGAGCGGATCGAGACACTGATTGGTCATTTGCAGGAAAGTAGCCAAAGTCAGGTAAGGCTTAGACCTGGTTAGGATCCAGTTTTTGTGTTTGGTGCGATCAGTCGATGAGCATGATTGCGTTTATCAGGTTGAGCTATCAGGCGATCCAGTACAAAATACCAGACAATACTTCCCTTTTTAAAAACAATCTTCCACAATTGCAAGTTAGAAAAGTCAGTTGGCTGATTGTAGAATTCTTGACAAATGGTGCGATAGTAGGCCTATCAACAGATTGCACAAAGATCAACGGATCACTCCCAACTTTTGACTTTTGTAGGAGAATGCATTTGCAGCCTTATGAGCGCAGATCTAGCCAAAGCTCCAGTATAGAGTCCACTCAAGAAACTTAAGTTATGATGTACAAACAAATAGACTTGATACCCAGATATGCCAGCTGTTCAAGGCCTATTGAGGTCTAGTTGGCAAGCTTTAAATAACGGCCAAAATTTTAGCTGAAATTTTTGTGTGCAGTGCCGAATGAATTTTTTTCGCTCACCGCTTTGTTGGGACCGTAAGCATCATTAGTAAATATGTGTGTCTTGCCTTTTGGCTACACAGGTGACTGACATTGGAAACTCAACTTCACACCAAAGATCAACAAGTTTCCCAAATAATTTGTGGCACATTAGAGTTAGGGATAACGATAGCCTCATGTAACGTGTTCAAAGTGAAGAATTTGTTGGTTGTGTTATAGTTGTTCCCATGTCCCATCCACTTGAATGAAACTGCCTCTCCAGCCATGGCTGCCAGTCCTCTGACCACCCATGTCCTGGACACGGCACTGGGCCGACCGGCTCGGAACCTCGGCATCGCGGTGTCGTACCAGAGACCCAACTCGCAGGAATTTGATCTCATTGCCAAGGGGTAACTTGACCTTGCGTAACCTACAAAGCCCAGGAAGCTGTGTTCTTTTTATTCTCATTTGCACCCTCCGGAGAGCAAAATTGCAGTCTTTCTCAGAAAAGAAATTCTTTTTGAAATTTAAAGGCATGAGATCTGCCAGAATTGTGTCTAAAATCCGTCCTTTGGAAAGCTTTATTTACATTTGCTTTGAAAGATATTTCCACTACAGAAAATAAGTCAATATCGGAGCTAGCGCAGTTCACCACCATACACATTTTGCCTCATTTGATTTGTTAAAAATCAACATTTCAGTGTTCAACATCAATTTAACTTGTTGAAGAATGTGCCCGTGAAATTGGAGCTATGTGTGGTATGGACAGTGTTTACTTTTTGTGTCAAAAACCCAGGGCAACCAACAGGGATGGCAGGGCTCCTGGCCTGCTGACCCAGGACCAGTTCATCGCTGGAGTCTACAAGATCAAGTTTGACACTGGCAGCTACTTCAAGTCCATCAACACAACAGGATTCTACCCATATGTGGAGGTAAGCAAGAGAAATCTTTCATTTTTAGATGCTGAAAGACTGGAATTGCAAAGCAATGTGGCTGTATCTACAATACAATTTGGGGGGTTACAAAATTGTCAAACTTGCCAGTGTTTTGGTCAAGTTCTTACTCATCAATCACAAGTCAAAAGGTCATAAAGGGAAAGGAAAAGACATTAGGCATCCTATTGTCTTATGGATTTGTAACCGGGCTTGTGATTTGACCAGACATTGATTTGCATTGACAACTAGCGTTTAGTTTGCAATGGAGAATTGTGCCTGCCCCCAGATTCGTTTGAGCCATTAGTCGGAAGTTTCAACCTTGGCAGGGCCTCTTTCTAAAAAGTTTGATCCCTTTTTTGAGTGTGTTTCTAATAGTAATTTTGCCAGTTATTGTTTCTGTTTGTGTATTTTTCCAGGTTGTGTTTGAGATAGCTGATCCTAGTCAACACTACCATGTGCCATTGCTTCTAAGTCCATACTCCTACAGTACCTATAGAGGGAGCTAGCCTGTAGCACTAAGGCGTTGAATGGGGGGAGGAGCTTGGAAATGTATTGGGGGCTGTGACATATACTTGTACGTACTCCATTCGCAGTAAGCCTTTTGCAAGTTAAATTTGAATAAAATCTGGCACACTGAGTTCTTTAAATTCAACATAAAAATTTGAA
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
