Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01048356.1 TSA: Lytechinus variegatus AMR9006.36069.1.1 transcribed RNA sequence TTTTTTTCTGGATAGGACTTTTAATGATTTAAACTTGTTTCAACAATACAGATGTTTAGCCATAATGTTA TTCATAACTCACTTCACTAAACTGACTACACAATCAGACTGAAACTTGCAAATTCTGTTGATTTATCCCG TTATTTCTGCTCATGTTTTCTTACTGTTTCAATACACTTGGATAGCTAGCTACACCGTCTATGAAACGTA CACACAACATATTCCCTTTTTTTTAATTTCATGAGTAAAATGCATGTCAGTACAGTACAAATGCCTGTCA TCTTCATTGCAAATGTGCATTTCTTCATAAATGACAGCTATTTATATGCAGTTTCAATCCAAAAGCGATA ACTGAGAACAGATCAATGGCAAGATGTACAAAATTCACAATTTCATTCTTATATATTGGTTGTTGTATAG TTCACAAATACTTAGTAGTATCATACTCTGTACAGTTCTATTCAATTAAGATACCTAAGGAGTTTAAACT TTGATTTACGTAGAATCAAACAAACCCTGGTTACGTACTGGACATGACATGAAATTACAAAAGACGATCA ATAATGTATAAAAAAAATCATTTAACTACTGAGATGGTTTAAATAGAAAAACAATTTAGCACACTGAGTT GACACCAATGGCTTAGCGATAATTCATTCAGTATTTACTGTTGTGTATATTATGAATGGTTATATCTATA CAAAGGTTTATGGTGTATAGCAATATGAAAGGACAAATCTGATTTGTTCCAAGCTATTAAATGAACAAAA ATGCCAATGAAGAAATGAACTTGATTGGACATTTCACAGAAAGATTGATTTTAAACCTTTGTCTTGTCAA GTTGTGTTTATGATTTCCCTGCTCCTAAAGATCAAGCTTTTCTGCAAATGAGTGAGATTTTGGAGCAGTC ACATGCCTCGAGACTATCATACCATCGGACTACTGTCTACAACTTGTGCAGCTATGACATCATGCCAATA CAGCTGTGTGATTGGCTAAAGTTAGATTAAGCTCAAAATCTTCTATGACCCAGTTGTTAAAATTCAATGT GTTCAATCTTGCTCATCTTTGACTAGTCTGCAACCCTCATTCATGGTAAAGCAGTATATTTCTCACCCAA TTGCAGTACATCCAGGGACATTTCACAAACCAGTTGTATTGTAAATCGGTAGGTGGTGATCTGTTTAGTG AAGCAGTTCATGAACACCATTGCAAGATAATCTTCAACACGGCAGCACCAGAAAGCCATTGATACATACA GCGACTGAAATAAATAGGGTGTTGCAGCCTGTTTTAATCATAGCTACTAGTTGTGCAAATGAATAATGCC CTTCAATAATAAAAATCTATCCACATTGAGTATTCACTTATCTTCTAATCTCTTAAGTCTTTGAGTTGTA CTTTGAGTTGTTAGAGATGAATATGTTTTGCAACAATGTTATATTTCATGCTTTTACCACATAAATAGTT TTTGCAATAGCTTCAATCAGAAAATGCAGGGATTACTTATTTGTTGTTGTTGTTTAGAAGTATTTTTCAC CAGCTATATTGGAAGGGAGTGATATGATTCTGCAATCAGAGTGACTCTTCAAGCTGCCTTGGATGAAAAA AAATCCATATTCCTCAATAATATTGGGATTGCTACTAAACATACATGAAGTGAACATGATTCTAGCTTGA ATTAAAGCGATCAAGACTTTTTCTTGGCACTAAAATTCTGCAAGGTTTGTGTTTTATTTATTGATTTGTA TTTACTGAGAAAACAAATGTTATTACTGCTCACTTTGTTGTCATTATTAATAAACTTAGAAAAGTAAATA ATATCATGGCTATGATTGTAACCAATTGATTTCAAGGAAAATGTTTTTAATTGATTGGGTTACTAGTAGT TTAAAGACATGCAGGTTATTCATATTATATTAATTCATAAGTTAAGTACAGACATTATCTCTTAATTGGT GCAAAGCAGATTTGCCACACACATCACATTCTTAACTATCTTAAATGTAGAATAAGTACTAGTAATGAAG ACATTAAATACGGACATTTAGAAAATTGAAAGTATTGGCACAATTTAAAGTACATAATTCATAAAGCAAC AATAAATGCTTCATAATACCATATCACGCAAATGGCAATGACGAGGGTATTCATTAAAGTTGTCAGGTAG TTTTGTACTTATTTCCCACTGGAATACTTCTGCGTAATCTTACTTTTTTTTCCATTTATCCCTCTAATTA TTTTATTACATGAGTTATGTGGCAGTGTCACTTAAATTATTCTCATCAGTCCAATGATTGAGATTTTCTA ACATCAGGAACAGATCTTTTCTTACTGTATCAACGGAATATATATGCCCCTTTCATTTTTACTGTTATCA TTGAATGTTAATTAAGTCCAGATAAACACAATTTAAACACTAGACACACAATGAATTGAAATTTTGAGTG TCTGAATATTTCTACTGTTGGCGGCTGAATTTTGTCATTCCAAAAAGCATTGTACAGGGACAACTTGGTT TCAAGTGGGTAAAAGAGATTGATGCTCGCTGTATTACAGAAGCAGTATAAACACACACACACACACGTAT ATGCAAGAGGGAAGCATGTACATGAATTAACATCTATTCGCTTAAGTCCTTTTCAAGAATTTTCTCATTC ACCTAAAGCCATATTAACCATGTACCATCACTTCCTATATTTGTTCTCTTTCACAAATATGATCACTTAT TGAAAAACTTTAGAAGAGGGACAAATTATTGTTGGAAAACATCTGACAACGTACATAAATAGAGTTGAAA TGTAACAACACTGATTGAATTTATGATATTTGTACAATAATTGGCAAAAAAGAAAAACATAGAAATCAAT CAATTTTTAGAAATCTTATTTACATAGAAAATTGCACATATTTTTTTCGTAGGAAAACCATAGCTATCTT TTCAATAATACACTTCTACCATCGGTTTAATGCTGTTGACCCTTTTCTCTGGCATTGCCTATCTATTTAA GGCAAGTCTATTATGGAACAATACCACAAGGAATTAAACACATTGTTGAAGAATATATTCAAACTGAAAA ATTATCAATAGAATTTTCGGGCAGCATATAAACAAAATTGGTACAAAGAGAATAAATACAATCTTAATGA ATTACAGTAAGGTACCTTGACAAAGATTGTCCAAGGCTTTGAGGAAGTCATGGCAGCTTTCCCAAATTCT CCACTGTTTTCACTATGTAGAATTTAGAAAGGCTTTGAATGATTTCAAGTTTGGTGTAGATATTTTGGTG TTGGGCCAATTTTAACATCAGGTAGGCATGAACCTTTAAATGAGCCTGAAACCATGATGAATCTCACTAA GTGTTAAGATATCCACAATGTAAAATGGACCTTTGCAGGTTCACATTAGGTTTGACAGCATGGTGAGGTC ATCTGAATTGTGATTCTTACACCAACCCTGAAATCACTTCAATGTCTTTCTCAATATGGAGATTACATGA CTTGATTTTTCTTGTAAGAAAGCAGCGGGCATTACGTACTTCCCCATGTACTGTCCTTCATATATTCTCT TGCCAAGCTGTGCATTCTACAGCTTGTCATAATTCAAAGATATCTTCAATTCAATGAGATGCAATGCTTT TTATTCCCGTACACAAACCTTCACACAATTGAAAATGAAAAATAATTATTATAATGAAAAATCATATTGG CACCAAAGGAATTGCAAGATGAATCATACAGGTGAGTTATTTAGAACGTTATCCACAGAAGTGTGGACAC TGGTAGAAAAATAATATTGACAAAAATAAGCACACACAATCGTACAAAATATTTAATAAAAAGGTGGTAC TAAACACATCAGCAAAACAGATGGCCTAATGCATAGCAAATGAAATAATAATTATACACAAAAGCAATTA AAGTAAATCTATAAGCATTCAGCAAACATTCTAGTAATATTCTTACTAATTCCAATCTTACAATAATATC TGAGATAGGCCAGAATGAATTATTTTTTTTAATGTGTTATCTTTTCTCAGTTGTTTGTGAGATGAACACA ACTTTCCTTCTTCGCTCAAGAAAATCTCTATTTCAAGCCTTGAGTATTTCCCAATAAGGATAATCAGTCA CATACTGAATTTCAGGGAAAAACTTAAATTCCTCTACAGAGGCTATTTTTTTGCTTCTTTCCTCCAGAAA ACTGTCTTTTGTAATTATACTGAACACAATGGTAATTTATGTGATTTTTTCAACTAATTTAGGGCTGAAT TTGATATAGGGGACTTAATTATCTCCAGCCTCTTTGCATTTTTCTTTTGCTGCTAGCTTTGGTTTTCCAT CACAACAAACAATGAATATAATTCTGGGTACACACAACCAGCACAAAATAGTATGGCTCTTAATATCTAA CAATAAATACTTTTAAAGAATTCTTCAGACTTGAAAAAGCTCTTTAGATATAGATACATTTCAAAGTTTT ATATACAGCTACATATTCAATTAGTTTGATGATAATAAAAAGGATACTTCTATACTATAGTTACCACTTC CTATACTTAGATACACTTTGTAATCTACACTCTGCACTTTAGAATCTAACTTTTGAGTTTAAATCCATTT TAATCTACATATGCTTGTATATGAAGTAATCATCACTGCCATAACTAATCACCACATCAAATATTCAATA TCCTTTTCATTTCCAACGTGACATTCGTTACAAGAAATATGAATAGCGATTTCTCCATTTTAACTATCAA AGAAAGAACGGGAGAACTGTTAGAGCCAGTGGTATGTGTTCTAAGTTTTGGTTTAATACGAAATTATAAT GTGTGTCTGATTAAATTATGGGTAGCCAAAATGTCAATAATTTGTTTATTTGCTGTAGGCCTATGTTTAC TACACACTTTTCTTATCATATAATGATGAATACATAGATATATGACTTTTCATTCTGCAAGAATTTTTCA GTTTGGGTGCAAGATATGTTGATAAATCAAACACTTTGTTTGAACCACAAATGGCTACCCATAATTCACA CACAGGTTTACACCTTAGTTTACACCTAAGTTTACACCTTAGTTTACACCTTAGGTTAAGTTAAACAAGA TGTCAAAGAAAAGTCAATTGAATATAAGTGGTTGCTTAAAATTCAAGTCTAGTTTTCTGATCTCATAATT CTCTAATGACGAATATATGTAACAACCAGCGGGAGGCAGAAAATGCTGAATATCTTATTTTTATTCATAT TTTTTATTTTCATGATTCCATTTTTTTTCAAATACCATACACCCACTTCCAACCATATACAAGCTAGTAT ACTTCAACATCTAATCTCTCTCTCCCTCTGTGTCTAGCTATTGTCTACTAGCTAATGTCTGAATGATTGT CTATGTACAGGAATCTGCATTGAGCCATAAAAACAGGGTGGTGGGAGGAGACGTTTTCAACAAAGGAAAT TGGAATGAAAGCATATCGAATTCAACTCCATCCATTCTAGAAAAATGTGGAGTTTGCAGTCCAACCACAG GATAAATATGTCTATATCACTAGAATGCTCAATCTCACTATACAGCAACTCCAAACCTGTTATATTTTAT AAAGATTGTCATATTTCATTTCATTGTCAATTAATGTATGAATGTAAGTACATTTGAGATGACTAACTAC TTGTATTTTTTCTGAATTATTCAAAACAATCAATGCTTCATCACATTTGGTTAAGTAGAGACACATCCAA TCGACCCCATCCTCTCCCCACTAATAGATAAATGATATGAAATACATATATTTCATGGTCGATTGTACTG AGCAAATCCGCAATTTTACTGGCTATATCAAATTTTCATTTTTCTTAAACAAGACCTAATACCTGTTTCC TTAGTACAACATACATTTCTTGTGATTATCTTCCCTAGGAATTAGCATTCTAGTGATTTACACATATTCA ACAAAAACAAGGACATTCATCAAATAAATCTCCTGCATTCATTAGAAACATGCTTCAAGTAGCATCACTC TTTGAACAATAGAAAAAAAAAATGCACCTACATTAATCTTTTGGCCCATGATGGGTGGAAGTTATTATAT ACAAAAATTTTGAAAACATTCAACTTCCTTTTTTTCACTCTCTCTCATTTGTTGGAGCTTCATAGAATGT AGATGTCGATGACATACTCTTAAAGGGTTGCAGCAAGTATTAGTTTCACTGTTGTTGTCTCATTGTTGTT ACCTGTCTCTTTATCTTTGAGCAACATAGAGTGACGATGCCTGGCTTGGGTCTGCTCCAGCTGGAAACAG TACTTTTAAGATGTAGTTTGTCAGCAAGTCAGGCACTTCTTTGCTGTCCTCATCAATTGCTTTCAATATT TTTGTAATTATCCTCAGAGTTTCCAGATCTGGTGGGGCATCTTTGTGGTATGGTATTCTCGTTGTCAGAT ACATGCCTGGTTCGATGCCATTCTTGAGTTTCAGTTTATTGCTGAGTAGGGAAAGGGGTTGCTGCTTTGC TTTCTGCTTCGGTGTTCCATTGTTTCCTGTTCCACTTCGACCCTTGATCTTATTCTGAACGCTGAGTAGA GCTGAGATGAAAGAGTTCTTGGTCTCCTTCTCGTAGTCTAGGTCCTCTCTCAGGGCTAGTTGCTGGACCA GAACCTCGGAGTATTCTTTGACGGTTTGGTCTAACTCTTCTAGGACTTCGTTGAGTTGTACCAGTGACAT GTTCTTCAGTTCCTGTGCAACTTTACTTTCTTCATAGCTACTGGTTGTCATAGACCTATTCCTCAAAGCC TGGAGCTCTCTTGATATGTTAGACAGTCTGTCCTCTTCTATGACCTCATCTGGCGTTGTATCTGTCGACT GGAACATTTCATCAAGTTCTTCGATTACTTCATCTGCAGTGACAACTGGCGTGTCCATATCATCGACATC GTGATGAGATCGAGAGGAGAGGATCATGGAATGAAGGTCCAAGCTCTGAAGAAGCTCATCATCTTCAGGA AGGTCAAGGTCATCATTATGAGGTCTCTTTTCTACAAGTCTGAGAGTAGGCATGTGCTTCCGTCTTGTGT GCGAGTTCTGCCAATCTAGAGGCATAACCTGTCCTAGCTGATCAGTTACTTGCTTCCATAATTTGCAATT TTTCATCATCTCCTCCTGTGTGAGTATTTTAACTGGTGCTAGTGGCTCCGTGTTGAGGTTGTAATTACGG AAGCATACGGCCAGCTTGTCATCGAAATTGTTGACCAAATCTTCGATAGACGATGAACGCATTTCGTTGA AGTTATCCGGGCTTATTTCCTCTTTCGGTGACAAAACTGGTAAAGCTTCTCCATTGGAATTTATAACGTC GGCTGAACTACGAAAATCTATGAATTCAGGCCATTCATCGCTTGCCGCATCGCCGTTTTCTTCGAACACA GCGAGTGGGGCTGCCATTTTTGTTAGAATTATCCACTTCAGCAGCTATACATGTTCATACACACACGGTC GACGGCTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds