Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038199714.1 PREDICTED: Patiria miniata ATPase MORC2-like (LOC119727697), transcript variant X1, mRNA TATCTCCCCGGATTGGAGGGGTGCGGGAACCAGTTTGTTACAATTAATTGCAAGAATTATTTATGCACGT ATATAAATAGCGATGACGCCATGCTGTATGTGATGCGCAGTGTTGTGCAATTATGGACGGAGGAAGCGTG GTCGCGCTGCCGGGAGGGCAGGGCCGGCTCTTGGCAAGACAATAACAGAGACAACCAATCATGGGGGTCC ACATCAATTCGCGTTTTCTTTCTTCTAGTGATGGCTTGTAGCTTTCCCAATAGATCGGCAGTAGTGACAA AGTGAGGGACGTGTATGCATTTTGACTGGTTTTGATGATAATGTAGTGCGGCGAGATTGTGCGTAAGGAT ATTCCACGAGAATCCGCCGACGTGGTCATGCTGCTATAAAAGCAAAGGTTGTCTGTGTACTCCCCCTCTC TCTCTTCAAACTTGAACATCAAACATGGAGGCTGAATATTTGTCTTTAGTACCCAGGGCGCTGAAAAGAG GCCAGCTCTGAAACTGAAGAAGGCTGCCAACTGTACTGTTCATGTTTGTTTTTTAAACAAGTGAATTTGT GTCCACGTTGTACTCAAACTAGAGCTCGGTTGCCATTTTAGTACGAGGGTTGAGGACTCCGAAATCATGG TGGTCTACCAGGGGTTGAGTCGCGCCCAGCTCAGCTTCGACTATCTGCACACAAACTCAACAACCCATGA GTTTCTCTTCGGTGCATTGGCGGAGCTACTCGACAATGCCAGGGATGCAAGAGCAAGGAGAATGGATGTG TTTACCGAAAAGGATGAAACACTCCGTGGAGGATACATGCTTTGCTTCCTGGACGATGGCACAGGAATGG ATCCAGCTGAGGTTGCCACCGTCATCCAGTTTGGAAAGTCAACAAAGAGAATGATGGAATCCAACATGAT TGGACAGTATGGCAATGGGTTGAAATCAGGTGCAATGCGTATCGGTAAAGACTTCCTACTCTTCACCAAA CAAGGGGCAACTATGAGCTGCCTGTTCTTGTCCCGCACTTTCCACGAAGAAGAAAAGATCGAGGAGGTCA TTGTTCCCATGCCGTCATTCGAAAAGAACACGAGGCACCCATTTGGTCAGAGTTCGGATGAGAAGCAAAG GCACAAAATAGAAATGGATTTGATTTACAAATACTCGCCATTCAAAACTGAGGAAGAATTCTTCGCCCAG TTTGATCGGATAGAGGGCGACTCAGGAACCTTGGTAATTATATATCACATGAAACTGATGGACAACGGCG ACTCTGAGCTGGACATCAGTACAGATGCGAGCGATATTCTGTTGGCGGGAACAGTGTCGAACACAGGAGT GCTGGACGATAGTCTAGTCCCCGAGCGGCAATCCTTCCGAGCCTATACCTCTATACTCTACGGTGAACCG AAGATGAAAATCTACATCCAAGGTCACAAGGTGCATACCAGACGTCTTGCCTACACACTCTACAAACCAA AGCTGTACAAATACACGTCCACACGCTTCAAGACGAGATCAGAACTGAAGACATCAGAGGCAGTTCATCA GGCTAAAGTTGCCAACGAGAAAGCTAGAGAAGCCGAGAGTAAAGCTCGAGATCTGGAAAAGAAACATGGG CAGGGAGGTCCGAAGGACAAAAGGGCTATGACCAGGCAGGCTCAAACCGAAGCCTTTGAACTCCGGCAAC GTGCCAATATCATGAAGAAAATATCAGAGAAGCAACAGAAGTCGCTCAAAGAGCCCAAGACGATCAACTT CCACTTTGGTATCAACCTTAGCAATCGAAGATATGATGGTGTCTTCATCTACAATTGCGGCAGACTGATC AAAATGTACGAACGGGTTGGACCTCAAGTGGACGGAGGAGTGCAATGTAGTGGAATTGTTGGGTTTGTAG ATGTGCCATACCTAGTGCTAGAACCCACACACAACAAGCAGGACTTTGCAGATGCCAAAGAATACCGACA TCTATTGAAGGCAATGGGGGAACACATGATCCAGTATTGGAAGGATATCAACATTGCATCACTAGGTGTG ACAAAGTTCTGGGAGAACTTCGGCTATGTCAGTCACAATTGGAAGGACCCGCCATCCGACGACCCCAAAT TTGTCAGGAAGAGGGCCATGCAAACACCGGTGCTGGTGCAATGTGATGCTTGCCTGAAGTGGAGAATCAT GCCGTTTTCCAGCAGTAATATCAACCGTGTGTTTTCTGATGACTGGCAGTGCAGTATGAACACTGATAGC ACACACAACAGGTGCTCAAGTGCTGAACAGAAGGTCCCAATCGCAACAGGTGTGTTCAAGAAAGAGGTCA AGTCGGCAGAGGAGCAGAAGAAAGAGATCCTAGAGGATATCAAGAAGAAGCAGGAGAAGCTGGGTAAAAT CGAGAGAGAAAAGAAACGTTCCTCCTGGTCACATTTTGCCGATGACGACTTCGAAGAACCTTACCAATAC AGAGAAAGAAGAACATCACTCCCTTCGTCAACGCCACCAAAGCCAATTGGCAAGGCCTCACCTGTACAGA GCTACAAAGAAAAGCCTACATCCAGACCAATCGGCAAGGCCTCCCCTGTGGTAAATCAACAGCAGAGCAG AAGACTCTCTGCGCAATCAACAGCCAGTAGTAACAAGCCAGCCACTGCCACCGTCAGCAGGTATACCACA CCAGCAGCCAAAAATGACAACAAGAAGACTGCCCCTATCGTTGAGAGGAAAGCAGCTTCAAGACCACAGA AAACGGCGCCACCGGCTCCGATTGCTAAAAAGGTGTATGCAACAAAGAGGCAAATTAGCTCCAGTACAAC TTCTGCAGCTGAAGCAAAGAATGAGGACAAAGCTCCTGAACCGGCGAAAAAGCGGAGGCTGACCGGCAAC TCGCAAATCTCGACTGATGAAGAGATGGACGTCGGTAAAGACGAGGAAAGCTCTGACTCAACACTGCCGA GCTGTGATATGCAGCTGGAGTCTGAAAGTGTTGGTAAGCGAGTTGAAGCCCGCGTTGATGGCAAGTGGTA CGCCGGCAAAGTGGTCAAAGTCTTTCAGAAACAAGACTGTGTCAAGTGGAAGGTCAAGTTTGATCAACAT CCCAAGGACAAATACGATAAGAGTTTTGACAAGAACAGTGAGGACATTAGGCCGATCCAGGAACCTCCCG CTTCAGCCACAGATGACCAGTCAGAATCCCCGGAAGCTGTACCCGCGGACATCCCCCCAGAGCTCCCTGA ACCTGCTCCAACAACTCGCGAGCCTGCTGTTCAGAAGGTCACGCCCACCACAACGGCCCTGCCGACAGCT GTCACGCCCCCTCAAGATACTGCCCCACCCACCACGCCCAGGACCACACCCAAGACCACGCCCAAGACCA CAACATCAGCCACGCCCCAGGCAGCAGTACCTCCCAGCAAGGCTGCAGTCACGCCCAGTGATAACACTGA GGAGCTGGAGGAGAATTTGAAAGATGAGAGACTTTCTCAGGGCTTCAGGAAATGCCTACGTTACTTCTTG CCGCCACTTTGGCCAATGAATAAGGAAATGATCAACAACCTCAGTGTAGAGGAGCTGAGTGAATTCCCTC TGGACAACTTCTTTGACCAATACGAAAAGGGGCTCAGGAATCTTGTTGGTGGCTTTCAAGCAGAAGCAGC TGAGAAAGCAAGAGAGACAGAAGCGACCAAAATCAAACTTGCCGAACTCAGGAAGCTCATTGCCCAGTTG CTCAGGTCTATCAATGATGAGATAGTCGTGAGCGATACGGCAGGGGAGGAGGTTGACGTCATGCTTGCTG CGTGTGTCAAGCAAGCCATGCAGGATGAGTGATCCTCATCCCCAGGGAGTTCCCTCAAGTTGGTACCCGT CAAACTGTCGATTACTTTATACAACGAAGAAGGGGTTGGCAACAGGATGCGCGACAAAGAGAGAAATCCA AGATGCTGGAAATCCGTCGCTAGTAACTTGACTACAGCATGAGTTTGCGTATGAACAGTGACCAAGGAAT AGCCACTGTTTGTTAGGTTGTCACAATACTCGAGAAAGGATAACATCTCATTGACAGAATTACAACTGTG GGCTTAATCTGGACACATGCCTGTTGAATTCTTACAACTCCTACAAAAACACGCATGCAGCTTGAAATGT CAGCAACTTGGTAAGAAATTGCAACGCGGTTAGTGCGGCATTATTGCTTTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds